Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr8

Orthogroup ID

OG0001449

Physical Location & Seq

Genomic Coordinates Reverse (-)

4297621 .. 4298103

Gene Structure 483 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom08g05670.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 483 bp

ATGGATTTGATAAACGGGGGAAACAATTTCTTCAGAGTATTGGAAGACATGCTGGACTTCGCCGATCAAGAGCCCGAAATGTCCCGAAACGCCAACAACCCCTCTCGGGCGTACGTCCGAGACGCGAAGGCGATGGCGTCCACCCCAGCGGACGTGGTGGAGTACCCGAACGCGTACGCGTTCGTGGTTGACATGCCTGGAATCAAAGCCAATGAAATTAAAGTGCATGTGGAGAACGACAACGTCTTGGTGGTGAGCGGGGAGCGGAGGCGGGAGAAAGAGAAGGAGAGCAAGGATGCGGTGAAGTATTTGAAGATGGAAAGGAGGGTTGGGAAGTTTATGAGGAAGTTTGTGCTGCCGGAGAATGCGAACTTGGAGGCGATCACGGCGGTGTCTCAAGATGGCGTGCTGACGGTGAGGGTGGAGAAGTTGCCTCCGCCGGAGCCCAAGAGGGCCAAGACCATTCAGGTCAGTGTTGCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0044424 GO:0044464

KEGG Pathways

Metabolic & Signaling

ko04141 map04141

Pfam Domains

Protein Families

HSP20

Protein Analysis

161

Amino Acids

18.02

Weight (kDa)

6.63

Isoelectric Point (pI)

46.43

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
HSP20	PF00011	52 - 158	3.7e-27	Hsp20/alpha crystallin family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

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Orthologous Genes (Group: OG0001449)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G12020 AT5G12030
fragaria_vesca	FvH4_2g31371
malus_domestica	MD00G1181700.v1.1 MD08G1068000.v1.1 MD08G1068200.v1.1 MD08G1068300.v1.1 MD08G1068500.v1.1 MD08G1068700.v1.1 MD08G1068800.v1.1 MD15G1053500.v1.1 MD15G1053600.v1.1 MD15G1053800.v1.1
prunus_persica	Prupe.1G407100_v2.0.a1 Prupe.1G407200_v2.0.a1 Prupe.1G407300_v2.0.a1
pyrus_communis	pycom08g05660 pycom08g05670
rosa_chinensis	RchiOBHm_Chr6g0311451 RchiOBHm_Chr6g0311461 RchiOBHm_Chr6g0311471
rosa_laevigata	RLG00000010403 RLG00000010404 RLG00000010405
rosa_multiflora	Rmu_co8421495.1_g000001 Rmu_sc0006915.1_g000010 Rmu_sc0006915.1_g000011 Rmu_sc0006915.1_g000012 Rmu_sc0013619.1_g000003 Rmu_sc0013619.1_g000004 Rmu_sc0013619.1_g000006 Rmu_sc0015790.1_g000003 Rmu_sc0015790.1_g000004
rosa_roxburghii	Rroxscaffold_7G00157590 Rroxscaffold_7G00157600
rosa_rugosa	Rorug06G0389100 Rorug06G0389100 Rorug06G0389200
rosa_samantha	Rh2AG205100 Rh2BG216900 Rh2DG211400 Rh6AG503500 Rh6AG503700 Rh6BG514200 Rh6BG514300 Rh6CG520000 Rh6CG520100 Rh6DG506100
rosa_wichuraiana	Rw2G016340 Rw6G043850 Rw6G043860 Rw6G043870

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	2 cut(s)	258, 265
AccII	CGCG	3 cut(s)	125, 173, 179
AciI	CCGC	7 cut(s)	149, 258, 265, 271, 299, 389, 437
AcuI	CTGAAG	1 cut(s)	16
AcyI	GRCGYC	1 cut(s)	137
AfaI	GTAC	3 cut(s)	113, 164, 176
AfiI	CCNNNNNNNGG	1 cut(s)	106
AflIII	ACRYGT	2 cut(s)	171, 177
AgsI	TTSAA	1 cut(s)	313
AjiI	CACGTC	1 cut(s)	154
AjnI	CCWGG	1 cut(s)	196
AjuI	GAANNNNNNNTTGG	4 cut(s)	312, 344, 356, 388
AleI	CACNNNNGTG	1 cut(s)	389
Alw26I	GTCTC	2 cut(s)	114, 399
Ama87I	CYCGRG	1 cut(s)	105
AoxI	GGCC	1 cut(s)	453
ApeKI	GCWGC	1 cut(s)	355
AspS9I	GGNCC	1 cut(s)	453
AsuHPI	GGTGA	3 cut(s)	265, 313, 427
AvaI	CYCGRG	1 cut(s)	105
BanII	GRGCYC	2 cut(s)	75, 447
BbsI	GAAGAC	1 cut(s)	51
BbvI	GCAGC	1 cut(s)	342
BccI	CCATC	3 cut(s)	127, 310, 395
BceAI	ACGGC	1 cut(s)	402
BciT130I	CCWGG	1 cut(s)	198
BcoDI	GTCTC	2 cut(s)	114, 399
BisI	GCNGC	1 cut(s)	356
BlsI	GCNGC	1 cut(s)	357
Bme1390I	CCNGG	1 cut(s)	198
BmeT110I	CYCGRG	1 cut(s)	105
BmgBI	CACGTC	1 cut(s)	154
BmgT120I	GGNCC	1 cut(s)	453
BmiI	GGNNCC	1 cut(s)	444
BmrFI	CCNGG	1 cut(s)	198
BmsI	GCATC	1 cut(s)	286
BpiI	GAAGAC	1 cut(s)	51
BpuEI	CTTGAG	1 cut(s)	381
BsaHI	GRCGYC	1 cut(s)	137
Bsc4I	CCNNNNNNNGG	1 cut(s)	106
BseBI	CCWGG	1 cut(s)	198
BseGI	GGATG	1 cut(s)	301
BseLI	CCNNNNNNNGG	1 cut(s)	106
BseXI	GCAGC	1 cut(s)	342
BseYI	CCCAGC	1 cut(s)	145
Bsh1236I	CGCG	3 cut(s)	125, 173, 179
BshFI	GGCC	1 cut(s)	455
BsiHKCI	CYCGRG	1 cut(s)	105
BsiSI	CCGG	2 cut(s)	359, 440
BsiWI	CGTACG	2 cut(s)	111, 174
BslFI	GGGAC	1 cut(s)	67
BslI	CCNNNNNNNGG	1 cut(s)	106
BsmAI	GTCTC	2 cut(s)	114, 399
BsmBI	CGTCTC	1 cut(s)	114
BsmFI	GGGAC	1 cut(s)	67
BsmI	GAATGC	1 cut(s)	370
BsnI	GGCC	1 cut(s)	455
BsoBI	CYCGRG	1 cut(s)	105
Bsp1286I	GDGCHC	2 cut(s)	75, 447
Bsp143I	GATC	2 cut(s)	64, 381
BspACI	CCGC	7 cut(s)	149, 258, 265, 271, 299, 389, 437
BspANI	GGCC	1 cut(s)	455
BspFNI	CGCG	3 cut(s)	125, 173, 179
BspLI	GGNNCC	1 cut(s)	444
BsrBI	CCGCTC	2 cut(s)	258, 265
BssMI	GATC	2 cut(s)	64, 381
BssNI	GRCGYC	1 cut(s)	137
Bst2UI	CCWGG	1 cut(s)	198
Bst4CI	ACNGT	1 cut(s)	415
BstACI	GRCGYC	1 cut(s)	137
BstC8I	GCNNGC	1 cut(s)	407
BstF5I	GGATG	1 cut(s)	301
BstFNI	CGCG	3 cut(s)	125, 173, 179
BstKTI	GATC	2 cut(s)	67, 384
BstMAI	GTCTC	2 cut(s)	114, 399
BstMBI	GATC	2 cut(s)	64, 381
BstMWI	GCNNNNNNNGC	1 cut(s)	386
BstNI	CCWGG	1 cut(s)	198
BstNSI	RCATGY	3 cut(s)	52, 196, 230
BstSCI	CCNGG	1 cut(s)	196
BstUI	CGCG	3 cut(s)	125, 173, 179
BstV1I	GCAGC	1 cut(s)	342
BstV2I	GAAGAC	1 cut(s)	51
BsuRI	GGCC	1 cut(s)	455
BtgZI	GCGATG	1 cut(s)	146
BtrI	CACGTC	1 cut(s)	154
BtsCI	GGATG	1 cut(s)	301
BtsIMutI	CAGTG	1 cut(s)	478
Cac8I	GCNNGC	1 cut(s)	407
Cfr13I	GGNCC	1 cut(s)	453
CseI	GACGC	2 cut(s)	126, 131
Csp6I	GTAC	3 cut(s)	112, 163, 175
CviAII	CATG	3 cut(s)	49, 193, 227
CviJI	RGCY	4 cut(s)	73, 209, 445, 455
CviKI_1	RGCY	4 cut(s)	73, 209, 445, 455
CviQI	GTAC	3 cut(s)	112, 163, 175
DpnI	GATC	2 cut(s)	66, 383
DpnII	GATC	2 cut(s)	64, 381
EciI	GGCGGA	1 cut(s)	426
Eco24I	GRGCYC	2 cut(s)	75, 447
Eco57I	CTGAAG	1 cut(s)	16
Eco88I	CYCGRG	1 cut(s)	105
EcoRII	CCWGG	1 cut(s)	196
EcoT38I	GRGCYC	2 cut(s)	75, 447
Esp3I	CGTCTC	1 cut(s)	114
FaeI	CATG	3 cut(s)	52, 196, 230
FaiI	YATR	4 cut(s)	50, 194, 228, 341
FaqI	GGGAC	1 cut(s)	67
FatI	CATG	3 cut(s)	48, 192, 226
FauI	CCCGC	2 cut(s)	251, 264
Fnu4HI	GCNGC	1 cut(s)	356
FokI	GGATG	1 cut(s)	308
FriOI	GRGCYC	2 cut(s)	75, 447
Fsp4HI	GCNGC	1 cut(s)	356
GluI	GCNGC	1 cut(s)	356
GsaI	CCCAGC	1 cut(s)	149
HaeIII	GGCC	1 cut(s)	455
HapII	CCGG	2 cut(s)	359, 440
HgaI	GACGC	2 cut(s)	126, 131
Hin1I	GRCGYC	1 cut(s)	137
Hin1II	CATG	3 cut(s)	52, 196, 230
HincII	GTYRAC	1 cut(s)	190
HindII	GTYRAC	1 cut(s)	190
HinfI	GANTC	1 cut(s)	201
HpaII	CCGG	2 cut(s)	359, 440
HphI	GGTGA	3 cut(s)	265, 313, 427
Hpy166II	GTNNAC	2 cut(s)	141, 190
Hpy188I	TCNGA	2 cut(s)	35, 119
Hpy188III	TCNNGA	3 cut(s)	68, 84, 398
Hpy8I	GTNNAC	2 cut(s)	141, 190
HpyAV	CCTTC	2 cut(s)	121, 277
HpyCH4III	ACNGT	1 cut(s)	415
HpyCH4IV	ACGT	3 cut(s)	114, 153, 243
HpyCH4V	TGCA	1 cut(s)	226
HpyF10VI	GCNNNNNNNGC	1 cut(s)	386
HpySE526I	ACGT	3 cut(s)	114, 153, 243
Hsp92I	GRCGYC	1 cut(s)	137
Hsp92II	CATG	3 cut(s)	52, 196, 230
Kzo9I	GATC	2 cut(s)	64, 381
LmnI	GCTCC	2 cut(s)	262, 442
LpnPI	CCDG	7 cut(s)	38, 159, 183, 210, 372, 452, 453
Lsp1109I	GCAGC	1 cut(s)	342
LweI	GCATC	1 cut(s)	286
MaeII	ACGT	3 cut(s)	114, 153, 243
MalI	GATC	2 cut(s)	66, 383
MbiI	CCGCTC	2 cut(s)	258, 265
MboI	GATC	2 cut(s)	64, 381
MboII	GAAGA	3 cut(s)	22, 56, 325
MhlI	GDGCHC	2 cut(s)	75, 447
MluCI	AATT	2 cut(s)	25, 216
MluI	ACGCGT	2 cut(s)	171, 177
MnlI	CCTC	8 cut(s)	112, 261, 318, 336, 370, 411, 444, 444
MseI	TTAA	1 cut(s)	219
MslI	CAYNNNNRTG	1 cut(s)	389
MspA1I	CMGCKG	1 cut(s)	149
MspI	CCGG	2 cut(s)	359, 440
MspR9I	CCNGG	1 cut(s)	198
Mva1269I	GAATGC	1 cut(s)	370
MvaI	CCWGG	1 cut(s)	198
MvnI	CGCG	3 cut(s)	125, 173, 179
MwoI	GCNNNNNNNGC	1 cut(s)	386
NdeII	GATC	2 cut(s)	64, 381
NlaIII	CATG	3 cut(s)	52, 196, 230
NlaIV	GGNNCC	1 cut(s)	444
NspI	RCATGY	3 cut(s)	52, 196, 230
OliI	CACNNNNGTG	1 cut(s)	389
PctI	GAATGC	1 cut(s)	370
PfeI	GAWTC	1 cut(s)	201
Pfl23II	CGTACG	2 cut(s)	111, 174
PflFI	GACNNNGTC	1 cut(s)	242
PkrI	GCNGC	1 cut(s)	357
Psp6I	CCWGG	1 cut(s)	196
PspFI	CCCAGC	1 cut(s)	145
PspGI	CCWGG	1 cut(s)	196
PspLI	CGTACG	2 cut(s)	111, 174
PspN4I	GGNNCC	1 cut(s)	444
PspPI	GGNCC	1 cut(s)	453
PsyI	GACNNNGTC	1 cut(s)	242
RsaI	GTAC	3 cut(s)	113, 164, 176
RsaNI	GTAC	3 cut(s)	112, 163, 175
RseI	CAYNNNNRTG	1 cut(s)	389
SaqAI	TTAA	1 cut(s)	219
SatI	GCNGC	1 cut(s)	356
Sau3AI	GATC	2 cut(s)	64, 381
Sau96I	GGNCC	1 cut(s)	453
ScrFI	CCNGG	1 cut(s)	198
SduI	GDGCHC	2 cut(s)	75, 447
SetI	ASST	4 cut(s)	117, 156, 246, 471
SfaNI	GCATC	1 cut(s)	286
SmiMI	CAYNNNNRTG	1 cut(s)	389
SmlI	CTYRAG	1 cut(s)	396
SmoI	CTYRAG	1 cut(s)	396
Sse9I	AATT	2 cut(s)	25, 216
SsiI	CCGC	7 cut(s)	149, 258, 265, 271, 299, 389, 437
StyD4I	CCNGG	1 cut(s)	196
TaaI	ACNGT	1 cut(s)	415
TaiI	ACGT	3 cut(s)	117, 156, 246
TasI	AATT	2 cut(s)	25, 216
TfiI	GAWTC	1 cut(s)	201
Tru1I	TTAA	1 cut(s)	219
Tru9I	TTAA	1 cut(s)	219
TscAI	CASTG	1 cut(s)	478
TseI	GCWGC	1 cut(s)	355
TspDTI	ATGAA	1 cut(s)	228
TspRI	CASTG	1 cut(s)	478
Tth111I	GACNNNGTC	1 cut(s)	242
XceI	RCATGY	3 cut(s)	52, 196, 230

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.