Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr15

Orthogroup ID

OG0001449

Physical Location & Seq

Genomic Coordinates Forward (+)

3658892 .. 3659347

Gene Structure 456 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD15G1053500.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 456 bp

ATGGATTTGAGAAACGCGGGAAACAATTTCTTCACATTATTGGAAGACATGCCGGACTTGGCCGATCAAGAGCCCGAAAAGTCCCGAAACCCCAAGAACCCGTCTCGGTCGAATGTCTGCGACGCGAGGGCAATGGCGGCCACTCCAGCGGACGTGGTGGAGTATCCAAACTCGCACGCGTTTGTGGAAGACATGCCCGGAATCAAAGCCAATGAAATTAGAGGAGAACGACAACGTTTTGGTGGTGAGCGGGGAGAGAAGGCGAGAAAAAGAGGAGAGGGTGGGATGAAGTATTTGAGGGTGGAGAAGTTTATGAGGAAGTTTGTGCCGCCGGAGAATGCAAATTTGGAGACGATTTCGGCGGTGGCTCAAGGTGGCGTGCTGACGGTGAGGGTGGAGAAATTGCCTCCGCCGGAGCCCAAGAGGGCCAAGAGCATTCAGGTCAACGTTGCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0044424 GO:0044464

KEGG Pathways

Metabolic & Signaling

ko04141 map04141

Pfam Domains

Protein Families

HSP20

Protein Analysis

152

Amino Acids

16.79

Weight (kDa)

9.09

Isoelectric Point (pI)

46.46

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
HSP20	PF00011	52 - 149	2.5e-13	Hsp20/alpha crystallin family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0001449)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G12020 AT5G12030
fragaria_vesca	FvH4_2g31371
malus_domestica	MD00G1181700.v1.1 MD08G1068000.v1.1 MD08G1068200.v1.1 MD08G1068300.v1.1 MD08G1068500.v1.1 MD08G1068700.v1.1 MD08G1068800.v1.1 MD15G1053500.v1.1 MD15G1053600.v1.1 MD15G1053800.v1.1
prunus_persica	Prupe.1G407100_v2.0.a1 Prupe.1G407200_v2.0.a1 Prupe.1G407300_v2.0.a1
pyrus_communis	pycom08g05660 pycom08g05670
rosa_chinensis	RchiOBHm_Chr6g0311451 RchiOBHm_Chr6g0311461 RchiOBHm_Chr6g0311471
rosa_laevigata	RLG00000010403 RLG00000010404 RLG00000010405
rosa_multiflora	Rmu_co8421495.1_g000001 Rmu_sc0006915.1_g000010 Rmu_sc0006915.1_g000011 Rmu_sc0006915.1_g000012 Rmu_sc0013619.1_g000003 Rmu_sc0013619.1_g000004 Rmu_sc0013619.1_g000006 Rmu_sc0015790.1_g000003 Rmu_sc0015790.1_g000004
rosa_roxburghii	Rroxscaffold_7G00157590 Rroxscaffold_7G00157600
rosa_rugosa	Rorug06G0389100 Rorug06G0389100 Rorug06G0389200
rosa_samantha	Rh2AG205100 Rh2BG216900 Rh2DG211400 Rh6AG503500 Rh6AG503700 Rh6BG514200 Rh6BG514300 Rh6CG520000 Rh6CG520100 Rh6DG506100
rosa_wichuraiana	Rw2G016340 Rw6G043850 Rw6G043860 Rw6G043870

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	250
AccII	CGCG	3 cut(s)	17, 125, 179
AciI	CCGC	7 cut(s)	17, 137, 149, 250, 329, 362, 410
AclI	AACGTT	2 cut(s)	235, 447
AcoI	YGGCCR	2 cut(s)	60, 138
AcsI	RAATTY	1 cut(s)	343
AflIII	ACRYGT	1 cut(s)	177
AjiI	CACGTC	1 cut(s)	154
AjuI	GAANNNNNNNTTGG	2 cut(s)	329, 361
Alw26I	GTCTC	2 cut(s)	108, 344
AoxI	GGCC	3 cut(s)	60, 138, 426
ApoI	RAATTY	1 cut(s)	343
AspS9I	GGNCC	1 cut(s)	426
AsuC2I	CCSGG	1 cut(s)	198
AsuHPI	GGTGA	2 cut(s)	257, 400
BanII	GRGCYC	2 cut(s)	75, 420
BbsI	GAAGAC	2 cut(s)	51, 195
BciVI	GTATCC	1 cut(s)	174
BcnI	CCSGG	1 cut(s)	198
BcoDI	GTCTC	2 cut(s)	108, 344
BfuI	GTATCC	1 cut(s)	174
BisI	GCNGC	2 cut(s)	138, 329
BlsI	GCNGC	2 cut(s)	139, 330
Bme1390I	CCNGG	1 cut(s)	198
BmgBI	CACGTC	1 cut(s)	154
BmgT120I	GGNCC	1 cut(s)	426
BmiI	GGNNCC	1 cut(s)	417
BmrFI	CCNGG	1 cut(s)	198
BpiI	GAAGAC	2 cut(s)	51, 195
BpmI	CTGGAG	1 cut(s)	129
BpuEI	CTTGAG	1 cut(s)	354
BpuMI	CCSGG	1 cut(s)	198
Bse3DI	GCAATG	1 cut(s)	138
BseGI	GGATG	1 cut(s)	291
BseMI	GCAATG	1 cut(s)	138
BseRI	GAGGAG	2 cut(s)	237, 288
Bsh1236I	CGCG	3 cut(s)	17, 125, 179
Bsh1285I	CGRYCG	1 cut(s)	110
BshFI	GGCC	3 cut(s)	62, 140, 428
BsiEI	CGRYCG	1 cut(s)	110
BsiSI	CCGG	4 cut(s)	53, 198, 332, 413
BslFI	GGGAC	1 cut(s)	67
BsmAI	GTCTC	2 cut(s)	108, 344
BsmBI	CGTCTC	2 cut(s)	108, 344
BsmFI	GGGAC	1 cut(s)	67
BsmI	GAATGC	2 cut(s)	343, 435
BsnI	GGCC	3 cut(s)	62, 140, 428
Bsp1286I	GDGCHC	2 cut(s)	75, 420
Bsp143I	GATC	1 cut(s)	64
BspACI	CCGC	7 cut(s)	17, 137, 149, 250, 329, 362, 410
BspANI	GGCC	3 cut(s)	62, 140, 428
BspFNI	CGCG	3 cut(s)	17, 125, 179
BspLI	GGNNCC	1 cut(s)	417
BsrBI	CCGCTC	1 cut(s)	250
BsrDI	GCAATG	1 cut(s)	138
BssMI	GATC	1 cut(s)	64
Bst4CI	ACNGT	1 cut(s)	388
BstC8I	GCNNGC	2 cut(s)	177, 380
BstF5I	GGATG	1 cut(s)	291
BstFNI	CGCG	3 cut(s)	17, 125, 179
BstKTI	GATC	1 cut(s)	67
BstMAI	GTCTC	2 cut(s)	108, 344
BstMBI	GATC	1 cut(s)	64
BstMCI	CGRYCG	1 cut(s)	110
BstMWI	GCNNNNNNNGC	2 cut(s)	137, 146
BstNSI	RCATGY	2 cut(s)	52, 196
BstSCI	CCNGG	1 cut(s)	196
BstUI	CGCG	3 cut(s)	17, 125, 179
BstV2I	GAAGAC	2 cut(s)	51, 195
BsuI	GTATCC	1 cut(s)	174
BsuRI	GGCC	3 cut(s)	62, 140, 428
BtrI	CACGTC	1 cut(s)	154
BtsCI	GGATG	1 cut(s)	291
Cac8I	GCNNGC	2 cut(s)	177, 380
Cfr13I	GGNCC	1 cut(s)	426
CseI	GACGC	1 cut(s)	131
CviAII	CATG	2 cut(s)	49, 193
CviJI	RGCY	7 cut(s)	62, 73, 140, 209, 368, 418, 428
CviKI_1	RGCY	7 cut(s)	62, 73, 140, 209, 368, 418, 428
DpnI	GATC	1 cut(s)	66
DpnII	GATC	1 cut(s)	64
EaeI	YGGCCR	2 cut(s)	60, 138
EciI	GGCGGA	1 cut(s)	399
Eco24I	GRGCYC	2 cut(s)	75, 420
EcoT38I	GRGCYC	2 cut(s)	75, 420
Esp3I	CGTCTC	2 cut(s)	108, 344
FaeI	CATG	2 cut(s)	52, 196
FaiI	YATR	3 cut(s)	50, 194, 314
FaqI	GGGAC	1 cut(s)	67
FatI	CATG	2 cut(s)	48, 192
FauI	CCCGC	2 cut(s)	10, 243
Fnu4HI	GCNGC	2 cut(s)	138, 329
FokI	GGATG	1 cut(s)	298
FriOI	GRGCYC	2 cut(s)	75, 420
Fsp4HI	GCNGC	2 cut(s)	138, 329
GluI	GCNGC	2 cut(s)	138, 329
GsuI	CTGGAG	1 cut(s)	129
HaeIII	GGCC	3 cut(s)	62, 140, 428
HapII	CCGG	4 cut(s)	53, 198, 332, 413
HgaI	GACGC	1 cut(s)	131
Hin1II	CATG	2 cut(s)	52, 196
HincII	GTYRAC	1 cut(s)	445
HindII	GTYRAC	1 cut(s)	445
HinfI	GANTC	1 cut(s)	201
HpaII	CCGG	4 cut(s)	53, 198, 332, 413
HphI	GGTGA	2 cut(s)	257, 400
Hpy166II	GTNNAC	1 cut(s)	445
Hpy188III	TCNNGA	2 cut(s)	68, 84
Hpy8I	GTNNAC	1 cut(s)	445
Hpy99I	CGWCG	1 cut(s)	125
HpyAV	CCTTC	1 cut(s)	253
HpyCH4III	ACNGT	1 cut(s)	388
HpyCH4IV	ACGT	3 cut(s)	153, 235, 447
HpyCH4V	TGCA	1 cut(s)	341
HpyF10VI	GCNNNNNNNGC	2 cut(s)	137, 146
HpySE526I	ACGT	3 cut(s)	153, 235, 447
Hsp92II	CATG	2 cut(s)	52, 196
Kzo9I	GATC	1 cut(s)	64
LmnI	GCTCC	1 cut(s)	415
LpnPI	CCDG	6 cut(s)	66, 159, 211, 345, 425, 426
MaeII	ACGT	3 cut(s)	153, 235, 447
MalI	GATC	1 cut(s)	66
MbiI	CCGCTC	1 cut(s)	250
MboI	GATC	1 cut(s)	64
MboII	GAAGA	3 cut(s)	22, 56, 200
MhlI	GDGCHC	2 cut(s)	75, 420
MluCI	AATT	4 cut(s)	25, 216, 343, 401
MluI	ACGCGT	1 cut(s)	177
MnlI	CCTC	9 cut(s)	120, 215, 266, 271, 291, 309, 384, 417, 417
MspA1I	CMGCKG	1 cut(s)	149
MspI	CCGG	4 cut(s)	53, 198, 332, 413
MspR9I	CCNGG	1 cut(s)	198
Mva1269I	GAATGC	2 cut(s)	343, 435
MvnI	CGCG	3 cut(s)	17, 125, 179
MwoI	GCNNNNNNNGC	2 cut(s)	137, 146
NciI	CCSGG	1 cut(s)	198
NdeII	GATC	1 cut(s)	64
NlaIII	CATG	2 cut(s)	52, 196
NlaIV	GGNNCC	1 cut(s)	417
NspI	RCATGY	2 cut(s)	52, 196
PctI	GAATGC	2 cut(s)	343, 435
PfeI	GAWTC	1 cut(s)	201
PkrI	GCNGC	2 cut(s)	139, 330
Psp1406I	AACGTT	2 cut(s)	235, 447
PspN4I	GGNNCC	1 cut(s)	417
PspPI	GGNCC	1 cut(s)	426
SatI	GCNGC	2 cut(s)	138, 329
Sau3AI	GATC	1 cut(s)	64
Sau96I	GGNCC	1 cut(s)	426
ScrFI	CCNGG	1 cut(s)	198
SduI	GDGCHC	2 cut(s)	75, 420
SetI	ASST	5 cut(s)	156, 238, 376, 444, 450
SmlI	CTYRAG	1 cut(s)	369
SmoI	CTYRAG	1 cut(s)	369
Sse9I	AATT	4 cut(s)	25, 216, 343, 401
SsiI	CCGC	7 cut(s)	17, 137, 149, 250, 329, 362, 410
StyD4I	CCNGG	1 cut(s)	196
TaaI	ACNGT	1 cut(s)	388
TaiI	ACGT	3 cut(s)	156, 238, 450
TaqI	TCGA	1 cut(s)	110
TaqII	GACCGA	1 cut(s)	96
TasI	AATT	4 cut(s)	25, 216, 343, 401
TauI	GCSGC	2 cut(s)	140, 331
TfiI	GAWTC	1 cut(s)	201
TspDTI	ATGAA	2 cut(s)	228, 302
XapI	RAATTY	1 cut(s)	343
XceI	RCATGY	2 cut(s)	52, 196

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.