Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2D

Orthogroup ID

OG0001449

Physical Location & Seq

Genomic Coordinates Forward (+)

20058520 .. 20058744

Gene Structure 225 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2DG211400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 225 bp

ATGGATTTCATAATCATGGGTCTGGATGCTCCAATCTTAACGGCACTGCAGCACCTGGTGGACCTCTCGGAGGAGATCGAGAAGACCTTTAACGTCTCGACCCTGACCTACGTCCGCGACACCAAGGCTATGGCTGCCACTCCGGCCGACGTGAAGGAGTTACCCAATTCCTATGTCTTCGTCATCGACATGCCTGGACTTAAGTCAGGGGGCATCAAGGTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006950 GO:0008150 GO:0009266 GO:0009408 GO:0009628 GO:0044424 GO:0044464 GO:0050896

KEGG Pathways

Metabolic & Signaling

ko04141 map04141

Pfam Domains

Protein Families

HSP20

Protein Analysis

74

Amino Acids

8.08

Weight (kDa)

4.6

Isoelectric Point (pI)

39.96

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001449)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G12020 AT5G12030
fragaria_vesca	FvH4_2g31371
malus_domestica	MD00G1181700.v1.1 MD08G1068000.v1.1 MD08G1068200.v1.1 MD08G1068300.v1.1 MD08G1068500.v1.1 MD08G1068700.v1.1 MD08G1068800.v1.1 MD15G1053500.v1.1 MD15G1053600.v1.1 MD15G1053800.v1.1
prunus_persica	Prupe.1G407100_v2.0.a1 Prupe.1G407200_v2.0.a1 Prupe.1G407300_v2.0.a1
pyrus_communis	pycom08g05660 pycom08g05670
rosa_chinensis	RchiOBHm_Chr6g0311451 RchiOBHm_Chr6g0311461 RchiOBHm_Chr6g0311471
rosa_laevigata	RLG00000010403 RLG00000010404 RLG00000010405
rosa_multiflora	Rmu_co8421495.1_g000001 Rmu_sc0006915.1_g000010 Rmu_sc0006915.1_g000011 Rmu_sc0006915.1_g000012 Rmu_sc0013619.1_g000003 Rmu_sc0013619.1_g000004 Rmu_sc0013619.1_g000006 Rmu_sc0015790.1_g000003 Rmu_sc0015790.1_g000004
rosa_roxburghii	Rroxscaffold_7G00157590 Rroxscaffold_7G00157600
rosa_rugosa	Rorug06G0389100 Rorug06G0389100 Rorug06G0389200
rosa_samantha	Rh2AG205100 Rh2BG216900 Rh2DG211400 Rh6AG503500 Rh6AG503700 Rh6BG514200 Rh6BG514300 Rh6CG520000 Rh6CG520100 Rh6DG506100
rosa_wichuraiana	Rw2G016340 Rw6G043850 Rw6G043860 Rw6G043870

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	117
AciI	CCGC	1 cut(s)	115
AcoI	YGGCCR	1 cut(s)	144
AdeI	CACNNNGTG	1 cut(s)	58
AfiI	CCNNNNNNNGG	1 cut(s)	70
AflII	CTTAAG	1 cut(s)	200
AjiI	CACGTC	1 cut(s)	151
AjnI	CCWGG	2 cut(s)	54, 193
Alw26I	GTCTC	1 cut(s)	100
AlwNI	CAGNNNCTG	1 cut(s)	55
AoxI	GGCC	1 cut(s)	144
ApeKI	GCWGC	2 cut(s)	49, 134
AspS9I	GGNCC	1 cut(s)	61
AvaII	GGWCC	1 cut(s)	61
BbsI	GAAGAC	2 cut(s)	89, 169
BbvI	GCAGC	2 cut(s)	61, 121
BceAI	ACGGC	1 cut(s)	57
BciT130I	CCWGG	2 cut(s)	56, 195
BcoDI	GTCTC	1 cut(s)	100
BfmI	CTRYAG	1 cut(s)	47
BfrI	CTTAAG	1 cut(s)	200
BglI	GCCNNNNNGGC	1 cut(s)	143
BisI	GCNGC	2 cut(s)	50, 135
BlsI	GCNGC	2 cut(s)	51, 136
Bme1390I	CCNGG	2 cut(s)	56, 195
Bme18I	GGWCC	1 cut(s)	61
BmgBI	CACGTC	1 cut(s)	151
BmgT120I	GGNCC	1 cut(s)	61
BmrFI	CCNGG	2 cut(s)	56, 195
BmsI	GCATC	1 cut(s)	16
BoxI	GACNNNNGTC	2 cut(s)	110, 202
BpiI	GAAGAC	2 cut(s)	89, 169
BsaJI	CCNNGG	1 cut(s)	123
Bsc4I	CCNNNNNNNGG	1 cut(s)	70
BseBI	CCWGG	2 cut(s)	56, 195
BseDI	CCNNGG	1 cut(s)	123
BseGI	GGATG	1 cut(s)	31
BseLI	CCNNNNNNNGG	1 cut(s)	70
BseRI	GAGGAG	1 cut(s)	86
BseX3I	CGGCCG	1 cut(s)	144
BseXI	GCAGC	2 cut(s)	61, 121
Bsh1236I	CGCG	1 cut(s)	117
Bsh1285I	CGRYCG	1 cut(s)	147
BshFI	GGCC	1 cut(s)	146
BsiEI	CGRYCG	1 cut(s)	147
BsiSI	CCGG	1 cut(s)	143
BslI	CCNNNNNNNGG	1 cut(s)	70
BsmAI	GTCTC	1 cut(s)	100
BsmBI	CGTCTC	1 cut(s)	100
BsnI	GGCC	1 cut(s)	146
Bsp143I	GATC	1 cut(s)	75
BspACI	CCGC	1 cut(s)	115
BspANI	GGCC	1 cut(s)	146
BspFNI	CGCG	1 cut(s)	117
BspMAI	CTGCAG	1 cut(s)	51
BspTI	CTTAAG	1 cut(s)	200
BssECI	CCNNGG	1 cut(s)	123
BssMI	GATC	1 cut(s)	75
BssT1I	CCWWGG	1 cut(s)	123
Bst2UI	CCWGG	2 cut(s)	56, 195
BstAFI	CTTAAG	1 cut(s)	200
BstENI	CCTNNNNNAGG	1 cut(s)	68
BstF5I	GGATG	1 cut(s)	31
BstFNI	CGCG	1 cut(s)	117
BstKTI	GATC	1 cut(s)	78
BstMAI	GTCTC	1 cut(s)	100
BstMBI	GATC	1 cut(s)	75
BstMCI	CGRYCG	1 cut(s)	147
BstMWI	GCNNNNNNNGC	2 cut(s)	134, 143
BstNI	CCWGG	2 cut(s)	56, 195
BstNSI	RCATGY	1 cut(s)	193
BstPAI	GACNNNNGTC	2 cut(s)	110, 202
BstSCI	CCNGG	2 cut(s)	54, 193
BstSFI	CTRYAG	1 cut(s)	47
BstUI	CGCG	1 cut(s)	117
BstV1I	GCAGC	2 cut(s)	61, 121
BstV2I	GAAGAC	2 cut(s)	89, 169
BstXI	CCANNNNNNTGG	1 cut(s)	130
BstZI	CGGCCG	1 cut(s)	144
BsuRI	GGCC	1 cut(s)	146
BtrI	CACGTC	1 cut(s)	151
BtsCI	GGATG	1 cut(s)	31
BtsI	GCAGTG	1 cut(s)	44
BtsIMutI	CAGTG	1 cut(s)	44
CaiI	CAGNNNCTG	1 cut(s)	55
Cfr13I	GGNCC	1 cut(s)	61
CsiI	ACCWGGT	1 cut(s)	54
CviAII	CATG	2 cut(s)	16, 190
CviJI	RGCY	3 cut(s)	128, 134, 146
CviKI_1	RGCY	3 cut(s)	128, 134, 146
DpnI	GATC	1 cut(s)	77
DpnII	GATC	1 cut(s)	75
DraIII	CACNNNGTG	1 cut(s)	58
EaeI	YGGCCR	1 cut(s)	144
EagI	CGGCCG	1 cut(s)	144
EclXI	CGGCCG	1 cut(s)	144
Eco130I	CCWWGG	1 cut(s)	123
Eco47I	GGWCC	1 cut(s)	61
Eco52I	CGGCCG	1 cut(s)	144
EcoNI	CCTNNNNNAGG	1 cut(s)	68
EcoRII	CCWGG	2 cut(s)	54, 193
EcoT14I	CCWWGG	1 cut(s)	123
ErhI	CCWWGG	1 cut(s)	123
Esp3I	CGTCTC	1 cut(s)	100
FaeI	CATG	2 cut(s)	19, 193
FaiI	YATR	5 cut(s)	11, 17, 131, 174, 191
FatI	CATG	2 cut(s)	15, 189
Fnu4HI	GCNGC	2 cut(s)	50, 135
FokI	GGATG	1 cut(s)	38
Fsp4HI	GCNGC	2 cut(s)	50, 135
GluI	GCNGC	2 cut(s)	50, 135
HaeIII	GGCC	1 cut(s)	146
HapII	CCGG	1 cut(s)	143
Hin1II	CATG	2 cut(s)	19, 193
HpaII	CCGG	1 cut(s)	143
Hpy166II	GTNNAC	1 cut(s)	61
Hpy188I	TCNGA	1 cut(s)	70
Hpy188III	TCNNGA	3 cut(s)	23, 79, 97
Hpy8I	GTNNAC	1 cut(s)	61
Hpy99I	CGWCG	1 cut(s)	152
HpyAV	CCTTC	1 cut(s)	148
HpyCH4IV	ACGT	3 cut(s)	93, 111, 150
HpyCH4V	TGCA	1 cut(s)	49
HpyF10VI	GCNNNNNNNGC	2 cut(s)	134, 143
HpySE526I	ACGT	3 cut(s)	93, 111, 150
Hsp92II	CATG	2 cut(s)	19, 193
Kzo9I	GATC	1 cut(s)	75
LmnI	GCTCC	1 cut(s)	34
LpnPI	CCDG	8 cut(s)	8, 41, 68, 116, 156, 180, 192, 207
Lsp1109I	GCAGC	2 cut(s)	61, 121
LweI	GCATC	1 cut(s)	16
MabI	ACCWGGT	1 cut(s)	54
MaeII	ACGT	3 cut(s)	93, 111, 150
MaeIII	GTNAC	1 cut(s)	159
MalI	GATC	1 cut(s)	77
MboI	GATC	1 cut(s)	75
MboII	GAAGA	2 cut(s)	94, 169
MluCI	AATT	1 cut(s)	166
MnlI	CCTC	2 cut(s)	64, 74
MseI	TTAA	3 cut(s)	38, 90, 201
MslI	CAYNNNNRTG	3 cut(s)	14, 188, 218
MspCI	CTTAAG	1 cut(s)	200
MspI	CCGG	1 cut(s)	143
MspR9I	CCNGG	2 cut(s)	56, 195
MvaI	CCWGG	2 cut(s)	56, 195
MvnI	CGCG	1 cut(s)	117
MwoI	GCNNNNNNNGC	2 cut(s)	134, 143
NdeII	GATC	1 cut(s)	75
NlaIII	CATG	2 cut(s)	19, 193
NspI	RCATGY	1 cut(s)	193
PkrI	GCNGC	2 cut(s)	51, 136
PshAI	GACNNNNGTC	2 cut(s)	110, 202
Psp6I	CCWGG	2 cut(s)	54, 193
PspGI	CCWGG	2 cut(s)	54, 193
PspPI	GGNCC	1 cut(s)	61
PstI	CTGCAG	1 cut(s)	51
PstNI	CAGNNNCTG	1 cut(s)	55
RseI	CAYNNNNRTG	3 cut(s)	14, 188, 218
SaqAI	TTAA	3 cut(s)	38, 90, 201
SatI	GCNGC	2 cut(s)	50, 135
Sau3AI	GATC	1 cut(s)	75
Sau96I	GGNCC	1 cut(s)	61
ScrFI	CCNGG	2 cut(s)	56, 195
SetI	ASST	8 cut(s)	57, 66, 89, 96, 110, 114, 153, 222
SexAI	ACCWGGT	1 cut(s)	54
SfaNI	GCATC	1 cut(s)	16
SfcI	CTRYAG	1 cut(s)	47
SinI	GGWCC	1 cut(s)	61
SmiMI	CAYNNNNRTG	3 cut(s)	14, 188, 218
SmlI	CTYRAG	1 cut(s)	200
SmoI	CTYRAG	1 cut(s)	200
Sse9I	AATT	1 cut(s)	166
SsiI	CCGC	1 cut(s)	115
StyD4I	CCNGG	2 cut(s)	54, 193
StyI	CCWWGG	1 cut(s)	123
TaiI	ACGT	3 cut(s)	96, 114, 153
TaqI	TCGA	3 cut(s)	78, 98, 186
TasI	AATT	1 cut(s)	166
Tru1I	TTAA	3 cut(s)	38, 90, 201
Tru9I	TTAA	3 cut(s)	38, 90, 201
TscAI	CASTG	1 cut(s)	51
TseI	GCWGC	2 cut(s)	49, 134
TspRI	CASTG	1 cut(s)	51
Vha464I	CTTAAG	1 cut(s)	200
VpaK11BI	GGWCC	1 cut(s)	61
XagI	CCTNNNNNAGG	1 cut(s)	68
XceI	RCATGY	1 cut(s)	193

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.