Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr6

Orthogroup ID

OG0001449

Physical Location & Seq

Genomic Coordinates Reverse (-)

67020814 .. 67021290

Gene Structure 477 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw6G043860.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 477 bp

ATGGATTTCAGAATCATGGGTCTGGATGCTCCAATCATGACAGCACTGCAGCAGCTACAGCAGCTGGCGGACTTCCCTGAGGAGAACGAGAAGACCTCCAACGCCCCGACCCGGACCTACGTCCGCGACGCCAAGGCTATGGCTTCCACTCCGGCCGACGTGAAGGAGTACCCCAATTCCTACGTGTTCGTGATCGACATGCCGGGGCTCAAGTCAGGCGACATCAAGGTGCAGGTGGAGGATGACAATGTGCTTCTGATCAGCGGCGAGAGGAAGAGGGAGGAAGAGAAAGAGGGGGTAAAGTATTTGAGGATGGAGAGGAGGGTTGGCAAGTTTATGAGGAAGTTTGTGCTGCCTGAGAATGCTAATGCTGATGCCATTTCTGCTGTTTGCCAAGATGGGGTTCTTACTGTGACTGTGGAGAAGGTGCCACCGCCTCAGCCGAAGACCAAGACTATTGAGGTCAAGATTGGTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006950 GO:0008150 GO:0009266 GO:0009408 GO:0009628 GO:0044424 GO:0044464 GO:0050896

KEGG Pathways

Metabolic & Signaling

ko04141 map04141

Pfam Domains

Protein Families

HSP20

Protein Analysis

158

Amino Acids

17.72

Weight (kDa)

5.37

Isoelectric Point (pI)

44.05

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
HSP20	PF00011	53 - 156	2.3e-30	Hsp20/alpha crystallin family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001449)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G12020 AT5G12030
fragaria_vesca	FvH4_2g31371
malus_domestica	MD00G1181700.v1.1 MD08G1068000.v1.1 MD08G1068200.v1.1 MD08G1068300.v1.1 MD08G1068500.v1.1 MD08G1068700.v1.1 MD08G1068800.v1.1 MD15G1053500.v1.1 MD15G1053600.v1.1 MD15G1053800.v1.1
prunus_persica	Prupe.1G407100_v2.0.a1 Prupe.1G407200_v2.0.a1 Prupe.1G407300_v2.0.a1
pyrus_communis	pycom08g05660 pycom08g05670
rosa_chinensis	RchiOBHm_Chr6g0311451 RchiOBHm_Chr6g0311461 RchiOBHm_Chr6g0311471
rosa_laevigata	RLG00000010403 RLG00000010404 RLG00000010405
rosa_multiflora	Rmu_co8421495.1_g000001 Rmu_sc0006915.1_g000010 Rmu_sc0006915.1_g000011 Rmu_sc0006915.1_g000012 Rmu_sc0013619.1_g000003 Rmu_sc0013619.1_g000004 Rmu_sc0013619.1_g000006 Rmu_sc0015790.1_g000003 Rmu_sc0015790.1_g000004
rosa_roxburghii	Rroxscaffold_7G00157590 Rroxscaffold_7G00157600
rosa_rugosa	Rorug06G0389100 Rorug06G0389100 Rorug06G0389200
rosa_samantha	Rh2AG205100 Rh2BG216900 Rh2DG211400 Rh6AG503500 Rh6AG503700 Rh6BG514200 Rh6BG514300 Rh6CG520000 Rh6CG520100 Rh6DG506100
rosa_wichuraiana	Rw2G016340 Rw6G043850 Rw6G043860 Rw6G043870

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	223
Acc36I	ACCTGC	1 cut(s)	223
AccB1I	GGYRCC	1 cut(s)	427
AccII	CGCG	1 cut(s)	126
AciI	CCGC	4 cut(s)	68, 124, 264, 434
AcoI	YGGCCR	1 cut(s)	153
AcyI	GRCGYC	1 cut(s)	129
AfaI	GTAC	1 cut(s)	170
AfiI	CCNNNNNNNGG	2 cut(s)	111, 400
AflIII	ACRYGT	1 cut(s)	183
AjiI	CACGTC	1 cut(s)	160
AjuI	GAANNNNNNNTTGG	2 cut(s)	387, 419
AluBI	AGCT	2 cut(s)	55, 64
AluI	AGCT	2 cut(s)	55, 64
AlwNI	CAGNNNCTG	1 cut(s)	64
AoxI	GGCC	1 cut(s)	153
ApeKI	GCWGC	4 cut(s)	49, 52, 61, 352
AspS9I	GGNCC	1 cut(s)	114
AsuC2I	CCSGG	2 cut(s)	112, 204
AvaII	GGWCC	1 cut(s)	114
AxyI	CCTNAGG	1 cut(s)	78
BanI	GGYRCC	1 cut(s)	427
BanII	GRGCYC	1 cut(s)	210
BbsI	GAAGAC	2 cut(s)	98, 452
BbvCI	CCTCAGC	1 cut(s)	438
BbvI	GCAGC	4 cut(s)	61, 64, 73, 339
BccI	CCATC	2 cut(s)	307, 392
BclI	TGATCA	1 cut(s)	258
BcnI	CCSGG	2 cut(s)	112, 204
BfmI	CTRYAG	2 cut(s)	47, 56
BfuAI	ACCTGC	1 cut(s)	223
BisI	GCNGC	5 cut(s)	50, 53, 62, 265, 353
BlsI	GCNGC	5 cut(s)	51, 54, 63, 266, 354
Bme1390I	CCNGG	2 cut(s)	112, 204
Bme18I	GGWCC	1 cut(s)	114
BmgBI	CACGTC	1 cut(s)	160
BmgT120I	GGNCC	1 cut(s)	114
BmiI	GGNNCC	1 cut(s)	429
BmrFI	CCNGG	2 cut(s)	112, 204
BmsI	GCATC	2 cut(s)	16, 364
BoxI	GACNNNNGTC	1 cut(s)	119
BpiI	GAAGAC	2 cut(s)	98, 452
BplI	GAGNNNNNCTC	2 cut(s)	80, 112
Bpu10I	CCTNAGC	1 cut(s)	438
BpuEI	CTTGAG	1 cut(s)	194
BpuMI	CCSGG	2 cut(s)	112, 204
BsaAI	YACGTR	1 cut(s)	184
BsaHI	GRCGYC	1 cut(s)	129
BsaJI	CCNNGG	2 cut(s)	132, 203
Bsc4I	CCNNNNNNNGG	2 cut(s)	111, 400
Bse21I	CCTNAGG	1 cut(s)	78
BseDI	CCNNGG	2 cut(s)	132, 203
BseGI	GGATG	3 cut(s)	31, 247, 318
BseLI	CCNNNNNNNGG	2 cut(s)	111, 400
BseMII	CTCAG	3 cut(s)	69, 348, 452
BseRI	GAGGAG	2 cut(s)	95, 334
BseX3I	CGGCCG	1 cut(s)	153
BseXI	GCAGC	4 cut(s)	61, 64, 73, 339
BsgI	GTGCAG	1 cut(s)	251
Bsh1236I	CGCG	1 cut(s)	126
Bsh1285I	CGRYCG	1 cut(s)	156
BshFI	GGCC	1 cut(s)	155
BshNI	GGYRCC	1 cut(s)	427
BsiEI	CGRYCG	1 cut(s)	156
BsiSI	CCGG	3 cut(s)	112, 152, 203
BslI	CCNNNNNNNGG	2 cut(s)	111, 400
BsmI	GAATGC	1 cut(s)	367
BsnI	GGCC	1 cut(s)	155
Bsp1286I	GDGCHC	1 cut(s)	210
Bsp143I	GATC	2 cut(s)	192, 258
BspACI	CCGC	4 cut(s)	68, 124, 264, 434
BspANI	GGCC	1 cut(s)	155
BspCNI	CTCAG	3 cut(s)	70, 349, 451
BspFNI	CGCG	1 cut(s)	126
BspHI	TCATGA	1 cut(s)	36
BspLI	GGNNCC	1 cut(s)	429
BspMAI	CTGCAG	1 cut(s)	51
BspMI	ACCTGC	1 cut(s)	223
BspT107I	GGYRCC	1 cut(s)	427
BssECI	CCNNGG	2 cut(s)	132, 203
BssMI	GATC	2 cut(s)	192, 258
BssNI	GRCGYC	1 cut(s)	129
BssT1I	CCWWGG	1 cut(s)	132
Bst4CI	ACNGT	2 cut(s)	412, 418
Bst6I	CTCTTC	2 cut(s)	269, 279
BstACI	GRCGYC	1 cut(s)	129
BstBAI	YACGTR	1 cut(s)	184
BstC8I	GCNNGC	1 cut(s)	66
BstDEI	CTNAG	3 cut(s)	78, 357, 438
BstF5I	GGATG	3 cut(s)	31, 247, 318
BstFNI	CGCG	1 cut(s)	126
BstKTI	GATC	2 cut(s)	195, 261
BstMBI	GATC	2 cut(s)	192, 258
BstMCI	CGRYCG	1 cut(s)	156
BstMWI	GCNNNNNNNGC	3 cut(s)	58, 61, 383
BstNSI	RCATGY	1 cut(s)	202
BstPAI	GACNNNNGTC	1 cut(s)	119
BstSCI	CCNGG	2 cut(s)	110, 202
BstSFI	CTRYAG	2 cut(s)	47, 56
BstUI	CGCG	1 cut(s)	126
BstV1I	GCAGC	4 cut(s)	61, 64, 73, 339
BstV2I	GAAGAC	2 cut(s)	98, 452
BstXI	CCANNNNNNTGG	1 cut(s)	139
BstZI	CGGCCG	1 cut(s)	153
Bsu36I	CCTNAGG	1 cut(s)	78
BsuRI	GGCC	1 cut(s)	155
BtrI	CACGTC	1 cut(s)	160
BtsCI	GGATG	3 cut(s)	31, 247, 318
BtsI	GCAGTG	1 cut(s)	44
BtsIMutI	CAGTG	1 cut(s)	44
BveI	ACCTGC	1 cut(s)	223
Cac8I	GCNNGC	1 cut(s)	66
CaiI	CAGNNNCTG	1 cut(s)	64
CciI	TCATGA	1 cut(s)	36
Cfr13I	GGNCC	1 cut(s)	114
CseI	GACGC	1 cut(s)	137
Csp6I	GTAC	1 cut(s)	169
CviAII	CATG	3 cut(s)	16, 37, 199
CviJI	RGCY	7 cut(s)	55, 64, 137, 143, 155, 208, 442
CviKI_1	RGCY	7 cut(s)	55, 64, 137, 143, 155, 208, 442
CviQI	GTAC	1 cut(s)	169
DdeI	CTNAG	3 cut(s)	78, 357, 438
DpnI	GATC	2 cut(s)	194, 260
DpnII	GATC	2 cut(s)	192, 258
EaeI	YGGCCR	1 cut(s)	153
EagI	CGGCCG	1 cut(s)	153
Eam1104I	CTCTTC	2 cut(s)	269, 279
EarI	CTCTTC	2 cut(s)	269, 279
EciI	GGCGGA	1 cut(s)	83
EclXI	CGGCCG	1 cut(s)	153
Eco130I	CCWWGG	1 cut(s)	132
Eco24I	GRGCYC	1 cut(s)	210
Eco47I	GGWCC	1 cut(s)	114
Eco52I	CGGCCG	1 cut(s)	153
Eco81I	CCTNAGG	1 cut(s)	78
EcoT14I	CCWWGG	1 cut(s)	132
EcoT38I	GRGCYC	1 cut(s)	210
ErhI	CCWWGG	1 cut(s)	132
FaeI	CATG	3 cut(s)	19, 40, 202
FaiI	YATR	5 cut(s)	17, 38, 140, 200, 338
FatI	CATG	3 cut(s)	15, 36, 198
FbaI	TGATCA	1 cut(s)	258
Fnu4HI	GCNGC	5 cut(s)	50, 53, 62, 265, 353
FokI	GGATG	3 cut(s)	38, 254, 325
FriOI	GRGCYC	1 cut(s)	210
Fsp4HI	GCNGC	5 cut(s)	50, 53, 62, 265, 353
GluI	GCNGC	5 cut(s)	50, 53, 62, 265, 353
HaeIII	GGCC	1 cut(s)	155
HapII	CCGG	3 cut(s)	112, 152, 203
HgaI	GACGC	1 cut(s)	137
Hin1I	GRCGYC	1 cut(s)	129
Hin1II	CATG	3 cut(s)	19, 40, 202
HinfI	GANTC	1 cut(s)	12
HpaII	CCGG	3 cut(s)	112, 152, 203
Hpy188I	TCNGA	2 cut(s)	11, 258
Hpy188III	TCNNGA	4 cut(s)	23, 37, 190, 466
Hpy99I	CGWCG	2 cut(s)	131, 161
HpyAV	CCTTC	2 cut(s)	157, 418
HpyCH4III	ACNGT	2 cut(s)	412, 418
HpyCH4IV	ACGT	3 cut(s)	120, 159, 183
HpyCH4V	TGCA	2 cut(s)	49, 232
HpyF10VI	GCNNNNNNNGC	3 cut(s)	58, 61, 383
HpyF3I	CTNAG	3 cut(s)	78, 357, 438
HpySE526I	ACGT	3 cut(s)	120, 159, 183
Hsp92I	GRCGYC	1 cut(s)	129
Hsp92II	CATG	3 cut(s)	19, 40, 202
Ksp22I	TGATCA	1 cut(s)	258
Kzo9I	GATC	2 cut(s)	192, 258
LmnI	GCTCC	1 cut(s)	34
LpnPI	CCDG	9 cut(s)	8, 50, 90, 125, 165, 201, 216, 218, 369
Lsp1109I	GCAGC	4 cut(s)	61, 64, 73, 339
LweI	GCATC	2 cut(s)	16, 364
MaeII	ACGT	3 cut(s)	120, 159, 183
MaeIII	GTNAC	1 cut(s)	412
MalI	GATC	2 cut(s)	194, 260
MboI	GATC	2 cut(s)	192, 258
MboII	GAAGA	4 cut(s)	103, 286, 296, 457
MhlI	GDGCHC	1 cut(s)	210
MluCI	AATT	1 cut(s)	175
MmeI	TCCRAC	1 cut(s)	123
MslI	CAYNNNNRTG	1 cut(s)	227
MspA1I	CMGCKG	2 cut(s)	64, 264
MspI	CCGG	3 cut(s)	112, 152, 203
MspR9I	CCNGG	2 cut(s)	112, 204
Mva1269I	GAATGC	1 cut(s)	367
MvnI	CGCG	1 cut(s)	126
MwoI	GCNNNNNNNGC	3 cut(s)	58, 61, 383
NciI	CCSGG	2 cut(s)	112, 204
NdeII	GATC	2 cut(s)	192, 258
NlaIII	CATG	3 cut(s)	19, 40, 202
NlaIV	GGNNCC	1 cut(s)	429
NmuCI	GTSAC	1 cut(s)	412
NspI	RCATGY	1 cut(s)	202
PagI	TCATGA	1 cut(s)	36
PaqCI	CACCTGC	1 cut(s)	223
PctI	GAATGC	1 cut(s)	367
PfeI	GAWTC	1 cut(s)	12
PkrI	GCNGC	5 cut(s)	51, 54, 63, 266, 354
Ppu21I	YACGTR	1 cut(s)	184
PshAI	GACNNNNGTC	1 cut(s)	119
PspN4I	GGNNCC	1 cut(s)	429
PspPI	GGNCC	1 cut(s)	114
PstI	CTGCAG	1 cut(s)	51
PstNI	CAGNNNCTG	1 cut(s)	64
PvuII	CAGCTG	1 cut(s)	64
RsaI	GTAC	1 cut(s)	170
RsaNI	GTAC	1 cut(s)	169
RseI	CAYNNNNRTG	1 cut(s)	227
SatI	GCNGC	5 cut(s)	50, 53, 62, 265, 353
Sau3AI	GATC	2 cut(s)	192, 258
Sau96I	GGNCC	1 cut(s)	114
ScrFI	CCNGG	2 cut(s)	112, 204
SduI	GDGCHC	1 cut(s)	210
SfaNI	GCATC	2 cut(s)	16, 364
SfcI	CTRYAG	2 cut(s)	47, 56
SinI	GGWCC	1 cut(s)	114
SmiMI	CAYNNNNRTG	1 cut(s)	227
SmlI	CTYRAG	1 cut(s)	209
SmoI	CTYRAG	1 cut(s)	209
Sse9I	AATT	1 cut(s)	175
SsiI	CCGC	4 cut(s)	68, 124, 264, 434
StyD4I	CCNGG	2 cut(s)	110, 202
StyI	CCWWGG	1 cut(s)	132
TaaI	ACNGT	2 cut(s)	412, 418
TaiI	ACGT	3 cut(s)	123, 162, 186
TaqI	TCGA	1 cut(s)	195
TasI	AATT	1 cut(s)	175
TauI	GCSGC	1 cut(s)	267
TfiI	GAWTC	1 cut(s)	12
TscAI	CASTG	1 cut(s)	51
TseFI	GTSAC	1 cut(s)	412
TseI	GCWGC	4 cut(s)	49, 52, 61, 352
Tsp45I	GTSAC	1 cut(s)	412
TspRI	CASTG	1 cut(s)	51
VpaK11BI	GGWCC	1 cut(s)	114
XceI	RCATGY	1 cut(s)	202

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.