Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0001449

Physical Location & Seq

Genomic Coordinates Reverse (-)

68369957 .. 68371392

Gene Structure 1436 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ28011

Sequence Viewer

CDS Protein Promoter (2k)

Length: 663 bp

ATGCCCATATCCGCTGCTCCCAATCATCCACGAACAAATTTCCAAAGCACTCGAACACCTACAGCTCTCACAACCAAACAAGCAAACATTTCACTAACCAAGAAGAGGAGAATGGATTTCAGAATCATGGGTCTGGATGCTCCAATCATGACAGCACTGCAGCAGCTACAGCAGCTGGCGGACTTCCCTGAGGAGAACGAGAAGACCTCCAACGCCCCGACCCGGACCTACGTCCGCGACGCCAAGGCTATGGCTTCCACTCCGGCCGACGTGAAGGAGTACCCCAATTCCTACGTGTTCGTGATCGACATGCCGGGGCTCAAGTCAGGGGACATCAAGGTGCAGGTGGAGGATGACAATGTGCTTCTGATCAGCGGCGAGAGGAAGAGGGAGGACGAGAAAGAGGGGGTAAAGTATTTGAGGATGGAGAGGAGGGTTGGCAAGTTTATGAGGAAGTTTGTGCTGCCTGAGAATGCTAATGCTGATGCCATTTCTGCTGTTTGCCAAGATGGGGTTCTTACTGTGACTGTGGAGAAGGTGCCACCGCCTCAGCCGAAGACCAAGACTATTGAGGGTGATTGGTACCAGTGTGCTGTCTTACGCGTTTTGGTTCTTGGAACAAGAAAGAAATATGGGGAAGCTAGGTCGGTCTGTACTCTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006950 GO:0008150 GO:0009266 GO:0009408 GO:0009628 GO:0044424 GO:0044464 GO:0050896

KEGG Pathways

Metabolic & Signaling

ko04141 map04141

Pfam Domains

Protein Families

HSP20

Protein Analysis

220

Amino Acids

24.69

Weight (kDa)

9.3

Isoelectric Point (pI)

45.97

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
HSP20	PF00011	90 - 191	5.5e-29	Hsp20/alpha crystallin family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001449)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G12020 AT5G12030
fragaria_vesca	FvH4_2g31371
malus_domestica	MD00G1181700.v1.1 MD08G1068000.v1.1 MD08G1068200.v1.1 MD08G1068300.v1.1 MD08G1068500.v1.1 MD08G1068700.v1.1 MD08G1068800.v1.1 MD15G1053500.v1.1 MD15G1053600.v1.1 MD15G1053800.v1.1
prunus_persica	Prupe.1G407100_v2.0.a1 Prupe.1G407200_v2.0.a1 Prupe.1G407300_v2.0.a1
pyrus_communis	pycom08g05660 pycom08g05670
rosa_chinensis	RchiOBHm_Chr6g0311451 RchiOBHm_Chr6g0311461 RchiOBHm_Chr6g0311471
rosa_laevigata	RLG00000010403 RLG00000010404 RLG00000010405
rosa_multiflora	Rmu_co8421495.1_g000001 Rmu_sc0006915.1_g000010 Rmu_sc0006915.1_g000011 Rmu_sc0006915.1_g000012 Rmu_sc0013619.1_g000003 Rmu_sc0013619.1_g000004 Rmu_sc0013619.1_g000006 Rmu_sc0015790.1_g000003 Rmu_sc0015790.1_g000004
rosa_roxburghii	Rroxscaffold_7G00157590 Rroxscaffold_7G00157600
rosa_rugosa	Rorug06G0389100 Rorug06G0389100 Rorug06G0389200
rosa_samantha	Rh2AG205100 Rh2BG216900 Rh2DG211400 Rh6AG503500 Rh6AG503700 Rh6BG514200 Rh6BG514300 Rh6CG520000 Rh6CG520100 Rh6DG506100
rosa_wichuraiana	Rw2G016340 Rw6G043850 Rw6G043860 Rw6G043870

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	334
Acc36I	ACCTGC	1 cut(s)	334
Acc65I	GGTACC	1 cut(s)	582
AccB1I	GGYRCC	2 cut(s)	538, 582
AccII	CGCG	2 cut(s)	237, 603
AciI	CCGC	5 cut(s)	12, 179, 235, 375, 545
AcoI	YGGCCR	1 cut(s)	264
AcsI	RAATTY	1 cut(s)	37
AcyI	GRCGYC	1 cut(s)	240
AfaI	GTAC	3 cut(s)	281, 584, 655
AfiI	CCNNNNNNNGG	3 cut(s)	105, 222, 511
AflIII	ACRYGT	2 cut(s)	294, 601
AjiI	CACGTC	1 cut(s)	271
AjuI	GAANNNNNNNTTGG	2 cut(s)	498, 530
AluBI	AGCT	4 cut(s)	65, 166, 175, 641
AluI	AGCT	4 cut(s)	65, 166, 175, 641
AlwNI	CAGNNNCTG	1 cut(s)	175
AoxI	GGCC	1 cut(s)	264
ApeKI	GCWGC	5 cut(s)	14, 160, 163, 172, 463
ApoI	RAATTY	1 cut(s)	37
Asp718I	GGTACC	1 cut(s)	582
AspS9I	GGNCC	1 cut(s)	225
AsuC2I	CCSGG	2 cut(s)	223, 315
AsuHPI	GGTGA	1 cut(s)	587
AvaII	GGWCC	1 cut(s)	225
AxyI	CCTNAGG	1 cut(s)	189
BaeI	ACNNNNGTAYC	2 cut(s)	574, 607
BanI	GGYRCC	2 cut(s)	538, 582
BanII	GRGCYC	1 cut(s)	321
BbsI	GAAGAC	2 cut(s)	209, 563
BbvCI	CCTCAGC	1 cut(s)	549
BbvI	GCAGC	4 cut(s)	172, 175, 184, 450
BccI	CCATC	2 cut(s)	418, 503
BclI	TGATCA	1 cut(s)	369
BcnI	CCSGG	2 cut(s)	223, 315
BfaI	CTAG	1 cut(s)	642
BfmI	CTRYAG	4 cut(s)	60, 158, 167, 659
BfuAI	ACCTGC	1 cut(s)	334
BisI	GCNGC	6 cut(s)	15, 161, 164, 173, 376, 464
BlsI	GCNGC	6 cut(s)	16, 162, 165, 174, 377, 465
Bme1390I	CCNGG	2 cut(s)	223, 315
Bme18I	GGWCC	1 cut(s)	225
BmgBI	CACGTC	1 cut(s)	271
BmgT120I	GGNCC	1 cut(s)	225
BmiI	GGNNCC	2 cut(s)	540, 584
BmrFI	CCNGG	2 cut(s)	223, 315
BmsI	GCATC	2 cut(s)	127, 475
BoxI	GACNNNNGTC	1 cut(s)	230
BpiI	GAAGAC	2 cut(s)	209, 563
BplI	GAGNNNNNCTC	2 cut(s)	191, 223
Bpu10I	CCTNAGC	1 cut(s)	549
BpuEI	CTTGAG	1 cut(s)	305
BpuMI	CCSGG	2 cut(s)	223, 315
BsaAI	YACGTR	1 cut(s)	295
BsaHI	GRCGYC	1 cut(s)	240
BsaJI	CCNNGG	2 cut(s)	243, 314
Bsc4I	CCNNNNNNNGG	3 cut(s)	105, 222, 511
Bse1I	ACTGG	1 cut(s)	586
Bse21I	CCTNAGG	1 cut(s)	189
BseDI	CCNNGG	2 cut(s)	243, 314
BseGI	GGATG	4 cut(s)	25, 142, 358, 429
BseLI	CCNNNNNNNGG	3 cut(s)	105, 222, 511
BseMII	CTCAG	3 cut(s)	180, 459, 563
BseNI	ACTGG	1 cut(s)	586
BseRI	GAGGAG	3 cut(s)	121, 206, 445
BseX3I	CGGCCG	1 cut(s)	264
BseXI	GCAGC	4 cut(s)	172, 175, 184, 450
BsgI	GTGCAG	1 cut(s)	362
Bsh1236I	CGCG	2 cut(s)	237, 603
Bsh1285I	CGRYCG	1 cut(s)	267
BshFI	GGCC	1 cut(s)	266
BshNI	GGYRCC	2 cut(s)	538, 582
BsiEI	CGRYCG	1 cut(s)	267
BsiSI	CCGG	3 cut(s)	223, 263, 314
BslFI	GGGAC	1 cut(s)	344
BslI	CCNNNNNNNGG	3 cut(s)	105, 222, 511
BsmFI	GGGAC	1 cut(s)	344
BsmI	GAATGC	1 cut(s)	478
BsnI	GGCC	1 cut(s)	266
Bsp1286I	GDGCHC	1 cut(s)	321
Bsp143I	GATC	2 cut(s)	303, 369
BspACI	CCGC	5 cut(s)	12, 179, 235, 375, 545
BspANI	GGCC	1 cut(s)	266
BspCNI	CTCAG	3 cut(s)	181, 460, 562
BspFNI	CGCG	2 cut(s)	237, 603
BspHI	TCATGA	1 cut(s)	147
BspLI	GGNNCC	2 cut(s)	540, 584
BspMAI	CTGCAG	1 cut(s)	162
BspMI	ACCTGC	1 cut(s)	334
BspT107I	GGYRCC	2 cut(s)	538, 582
BsrI	ACTGG	1 cut(s)	586
BssECI	CCNNGG	2 cut(s)	243, 314
BssMI	GATC	2 cut(s)	303, 369
BssNI	GRCGYC	1 cut(s)	240
BssT1I	CCWWGG	1 cut(s)	243
Bst4CI	ACNGT	2 cut(s)	523, 529
Bst6I	CTCTTC	2 cut(s)	98, 380
BstACI	GRCGYC	1 cut(s)	240
BstBAI	YACGTR	1 cut(s)	295
BstC8I	GCNNGC	1 cut(s)	177
BstDEI	CTNAG	3 cut(s)	189, 468, 549
BstF5I	GGATG	4 cut(s)	25, 142, 358, 429
BstFNI	CGCG	2 cut(s)	237, 603
BstKTI	GATC	2 cut(s)	306, 372
BstMBI	GATC	2 cut(s)	303, 369
BstMCI	CGRYCG	1 cut(s)	267
BstMWI	GCNNNNNNNGC	3 cut(s)	169, 172, 494
BstNSI	RCATGY	1 cut(s)	313
BstPAI	GACNNNNGTC	1 cut(s)	230
BstSCI	CCNGG	2 cut(s)	221, 313
BstSFI	CTRYAG	4 cut(s)	60, 158, 167, 659
BstUI	CGCG	2 cut(s)	237, 603
BstV1I	GCAGC	4 cut(s)	172, 175, 184, 450
BstV2I	GAAGAC	2 cut(s)	209, 563
BstXI	CCANNNNNNTGG	1 cut(s)	250
BstZI	CGGCCG	1 cut(s)	264
Bsu36I	CCTNAGG	1 cut(s)	189
BsuRI	GGCC	1 cut(s)	266
BtrI	CACGTC	1 cut(s)	271
BtsCI	GGATG	4 cut(s)	25, 142, 358, 429
BtsI	GCAGTG	1 cut(s)	155
BtsIMutI	CAGTG	2 cut(s)	155, 593
BveI	ACCTGC	1 cut(s)	334
Cac8I	GCNNGC	1 cut(s)	177
CaiI	CAGNNNCTG	1 cut(s)	175
CciI	TCATGA	1 cut(s)	147
Cfr13I	GGNCC	1 cut(s)	225
CseI	GACGC	1 cut(s)	248
Csp6I	GTAC	3 cut(s)	280, 583, 654
CviAII	CATG	3 cut(s)	127, 148, 310
CviJI	RGCY	9 cut(s)	65, 166, 175, 248, 254, 266, 319, 553, 641
CviKI_1	RGCY	9 cut(s)	65, 166, 175, 248, 254, 266, 319, 553, 641
CviQI	GTAC	3 cut(s)	280, 583, 654
DdeI	CTNAG	3 cut(s)	189, 468, 549
DpnI	GATC	2 cut(s)	305, 371
DpnII	GATC	2 cut(s)	303, 369
EaeI	YGGCCR	1 cut(s)	264
EagI	CGGCCG	1 cut(s)	264
Eam1104I	CTCTTC	2 cut(s)	98, 380
EarI	CTCTTC	2 cut(s)	98, 380
EciI	GGCGGA	1 cut(s)	194
EclXI	CGGCCG	1 cut(s)	264
Eco130I	CCWWGG	1 cut(s)	243
Eco24I	GRGCYC	1 cut(s)	321
Eco47I	GGWCC	1 cut(s)	225
Eco52I	CGGCCG	1 cut(s)	264
Eco81I	CCTNAGG	1 cut(s)	189
EcoT14I	CCWWGG	1 cut(s)	243
EcoT38I	GRGCYC	1 cut(s)	321
ErhI	CCWWGG	1 cut(s)	243
FaeI	CATG	3 cut(s)	130, 151, 313
FaiI	YATR	7 cut(s)	8, 128, 149, 251, 311, 449, 633
FaqI	GGGAC	1 cut(s)	344
FatI	CATG	3 cut(s)	126, 147, 309
FbaI	TGATCA	1 cut(s)	369
Fnu4HI	GCNGC	6 cut(s)	15, 161, 164, 173, 376, 464
FokI	GGATG	4 cut(s)	12, 149, 365, 436
FriOI	GRGCYC	1 cut(s)	321
Fsp4HI	GCNGC	6 cut(s)	15, 161, 164, 173, 376, 464
FspBI	CTAG	1 cut(s)	642
GluI	GCNGC	6 cut(s)	15, 161, 164, 173, 376, 464
HaeIII	GGCC	1 cut(s)	266
HapII	CCGG	3 cut(s)	223, 263, 314
HgaI	GACGC	1 cut(s)	248
Hin1I	GRCGYC	1 cut(s)	240
Hin1II	CATG	3 cut(s)	130, 151, 313
HinfI	GANTC	1 cut(s)	123
HpaII	CCGG	3 cut(s)	223, 263, 314
HphI	GGTGA	1 cut(s)	587
Hpy188I	TCNGA	2 cut(s)	122, 369
Hpy188III	TCNNGA	3 cut(s)	134, 148, 301
Hpy99I	CGWCG	2 cut(s)	242, 272
HpyAV	CCTTC	2 cut(s)	268, 529
HpyCH4III	ACNGT	2 cut(s)	523, 529
HpyCH4IV	ACGT	3 cut(s)	231, 270, 294
HpyCH4V	TGCA	2 cut(s)	160, 343
HpyF10VI	GCNNNNNNNGC	3 cut(s)	169, 172, 494
HpyF3I	CTNAG	3 cut(s)	189, 468, 549
HpySE526I	ACGT	3 cut(s)	231, 270, 294
Hsp92I	GRCGYC	1 cut(s)	240
Hsp92II	CATG	3 cut(s)	130, 151, 313
KpnI	GGTACC	1 cut(s)	586
Ksp22I	TGATCA	1 cut(s)	369
Kzo9I	GATC	2 cut(s)	303, 369
LmnI	GCTCC	2 cut(s)	22, 145
Lsp1109I	GCAGC	4 cut(s)	172, 175, 184, 450
LweI	GCATC	2 cut(s)	127, 475
MaeI	CTAG	1 cut(s)	642
MaeII	ACGT	3 cut(s)	231, 270, 294
MaeIII	GTNAC	1 cut(s)	523
MalI	GATC	2 cut(s)	305, 371
MboI	GATC	2 cut(s)	303, 369
MboII	GAAGA	4 cut(s)	115, 214, 397, 568
MhlI	GDGCHC	1 cut(s)	321
MluCI	AATT	2 cut(s)	37, 286
MluI	ACGCGT	1 cut(s)	601
MmeI	TCCRAC	1 cut(s)	234
MslI	CAYNNNNRTG	1 cut(s)	338
MspA1I	CMGCKG	3 cut(s)	14, 175, 375
MspI	CCGG	3 cut(s)	223, 263, 314
MspR9I	CCNGG	2 cut(s)	223, 315
Mva1269I	GAATGC	1 cut(s)	478
MvnI	CGCG	2 cut(s)	237, 603
MwoI	GCNNNNNNNGC	3 cut(s)	169, 172, 494
NciI	CCSGG	2 cut(s)	223, 315
NdeII	GATC	2 cut(s)	303, 369
NlaIII	CATG	3 cut(s)	130, 151, 313
NlaIV	GGNNCC	2 cut(s)	540, 584
NmuCI	GTSAC	1 cut(s)	523
NspI	RCATGY	1 cut(s)	313
PagI	TCATGA	1 cut(s)	147
PaqCI	CACCTGC	1 cut(s)	334
PctI	GAATGC	1 cut(s)	478
PfeI	GAWTC	1 cut(s)	123
PkrI	GCNGC	6 cut(s)	16, 162, 165, 174, 377, 465
Ppu21I	YACGTR	1 cut(s)	295
PshAI	GACNNNNGTC	1 cut(s)	230
PspN4I	GGNNCC	2 cut(s)	540, 584
PspPI	GGNCC	1 cut(s)	225
PstI	CTGCAG	1 cut(s)	162
PstNI	CAGNNNCTG	1 cut(s)	175
PvuII	CAGCTG	1 cut(s)	175
RsaI	GTAC	3 cut(s)	281, 584, 655
RsaNI	GTAC	3 cut(s)	280, 583, 654
RseI	CAYNNNNRTG	1 cut(s)	338
SatI	GCNGC	6 cut(s)	15, 161, 164, 173, 376, 464
Sau3AI	GATC	2 cut(s)	303, 369
Sau96I	GGNCC	1 cut(s)	225
ScrFI	CCNGG	2 cut(s)	223, 315
SduI	GDGCHC	1 cut(s)	321
SfaNI	GCATC	2 cut(s)	127, 475
SfcI	CTRYAG	4 cut(s)	60, 158, 167, 659
SinI	GGWCC	1 cut(s)	225
SmiMI	CAYNNNNRTG	1 cut(s)	338
SmlI	CTYRAG	1 cut(s)	320
SmoI	CTYRAG	1 cut(s)	320
Sse9I	AATT	2 cut(s)	37, 286
SsiI	CCGC	5 cut(s)	12, 179, 235, 375, 545
SspMI	CTAG	1 cut(s)	642
StyD4I	CCNGG	2 cut(s)	221, 313
StyI	CCWWGG	1 cut(s)	243
TaaI	ACNGT	2 cut(s)	523, 529
TaiI	ACGT	3 cut(s)	234, 273, 297
TaqI	TCGA	2 cut(s)	52, 306
TaqII	GACCGA	1 cut(s)	637
TasI	AATT	2 cut(s)	37, 286
TatI	WGTACW	1 cut(s)	653
TauI	GCSGC	1 cut(s)	378
TfiI	GAWTC	1 cut(s)	123
TscAI	CASTG	2 cut(s)	162, 593
TseFI	GTSAC	1 cut(s)	523
TseI	GCWGC	5 cut(s)	14, 160, 163, 172, 463
Tsp45I	GTSAC	1 cut(s)	523
TspRI	CASTG	2 cut(s)	162, 593
VpaK11BI	GGWCC	1 cut(s)	225
XapI	RAATTY	1 cut(s)	37
XceI	RCATGY	1 cut(s)	313
XspI	CTAG	1 cut(s)	642

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.