Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr6

Orthogroup ID

OG0001449

Physical Location & Seq

Genomic Coordinates Reverse (-)

67018585 .. 67019561

Gene Structure 977 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw6G043850.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 474 bp

ATGGATTTCAGAATCTTGGGTCTGGATGCTCCAATCTTAACAGCACTGCAGCACCTGGCGGACCTCCCGGAGGAGACCGAGAAGACCTTCAACAACGCCCCCACCCGGACCTACGTCCGCGACGCCAAGGCCATGGCTGCCACTCCGGCCGACGTGAAGGAGTTGCCCAACTCCTATGTCTTCGTCATCGACATGCCTGGCCTCAAGTCAGGGGACATCAAGGTGCAGGTGGAGGATGACAATGTGCTTCTGATCAGCGGCGAGAGGAAGAGGGAGGAGGAGAAAGAGGGGGCCAAGTATGTGAGGATGGAGAGGAGGGTCGGTAAGTTTATGAGGAAGTTTGTTCTGCCTGACAATGCTAATGCTGATACCATTTCTGCTGTTTGCCAAGATGGGGTTCTGACTGTGACTGTGGAGAAGCTGCCACCTCCTCAGCCGAAGAAGCCCAAGACTATTGAGGTCAAGATTGGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006950 GO:0008150 GO:0009266 GO:0009408 GO:0009628 GO:0044424 GO:0044464 GO:0050896

KEGG Pathways

Metabolic & Signaling

ko04141 map04141

Pfam Domains

Protein Families

HSP20

Protein Analysis

157

Amino Acids

17.49

Weight (kDa)

5.94

Isoelectric Point (pI)

40.7

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
HSP20	PF00011	51 - 155	1e-31	Hsp20/alpha crystallin family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001449)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G12020 AT5G12030
fragaria_vesca	FvH4_2g31371
malus_domestica	MD00G1181700.v1.1 MD08G1068000.v1.1 MD08G1068200.v1.1 MD08G1068300.v1.1 MD08G1068500.v1.1 MD08G1068700.v1.1 MD08G1068800.v1.1 MD15G1053500.v1.1 MD15G1053600.v1.1 MD15G1053800.v1.1
prunus_persica	Prupe.1G407100_v2.0.a1 Prupe.1G407200_v2.0.a1 Prupe.1G407300_v2.0.a1
pyrus_communis	pycom08g05660 pycom08g05670
rosa_chinensis	RchiOBHm_Chr6g0311451 RchiOBHm_Chr6g0311461 RchiOBHm_Chr6g0311471
rosa_laevigata	RLG00000010403 RLG00000010404 RLG00000010405
rosa_multiflora	Rmu_co8421495.1_g000001 Rmu_sc0006915.1_g000010 Rmu_sc0006915.1_g000011 Rmu_sc0006915.1_g000012 Rmu_sc0013619.1_g000003 Rmu_sc0013619.1_g000004 Rmu_sc0013619.1_g000006 Rmu_sc0015790.1_g000003 Rmu_sc0015790.1_g000004
rosa_roxburghii	Rroxscaffold_7G00157590 Rroxscaffold_7G00157600
rosa_rugosa	Rorug06G0389100 Rorug06G0389100 Rorug06G0389200
rosa_samantha	Rh2AG205100 Rh2BG216900 Rh2DG211400 Rh6AG503500 Rh6AG503700 Rh6BG514200 Rh6BG514300 Rh6CG520000 Rh6CG520100 Rh6DG506100
rosa_wichuraiana	Rw2G016340 Rw6G043850 Rw6G043860 Rw6G043870

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	217
Acc36I	ACCTGC	1 cut(s)	217
AccII	CGCG	1 cut(s)	120
AciI	CCGC	3 cut(s)	59, 118, 258
AcoI	YGGCCR	1 cut(s)	147
AcyI	GRCGYC	1 cut(s)	123
AfiI	CCNNNNNNNGG	3 cut(s)	70, 105, 394
AgsI	TTSAA	1 cut(s)	91
AjiI	CACGTC	1 cut(s)	154
AjnI	CCWGG	2 cut(s)	54, 196
AjuI	GAANNNNNNNTTGG	2 cut(s)	381, 413
AluBI	AGCT	1 cut(s)	421
AluI	AGCT	1 cut(s)	421
Alw26I	GTCTC	1 cut(s)	68
AlwNI	CAGNNNCTG	1 cut(s)	55
AoxI	GGCC	4 cut(s)	129, 147, 199, 291
ApeKI	GCWGC	3 cut(s)	49, 137, 421
Asp700I	GAANNNNTTC	1 cut(s)	86
AspS9I	GGNCC	3 cut(s)	61, 108, 291
AsuC2I	CCSGG	2 cut(s)	68, 106
AvaII	GGWCC	2 cut(s)	61, 108
BbsI	GAAGAC	2 cut(s)	89, 172
BbvCI	CCTCAGC	1 cut(s)	432
BbvI	GCAGC	3 cut(s)	61, 124, 408
BccI	CCATC	2 cut(s)	301, 386
BciT130I	CCWGG	2 cut(s)	56, 198
BclI	TGATCA	1 cut(s)	252
BcnI	CCSGG	2 cut(s)	68, 106
BcoDI	GTCTC	1 cut(s)	68
BfmI	CTRYAG	1 cut(s)	47
BfuAI	ACCTGC	1 cut(s)	217
BglI	GCCNNNNNGGC	1 cut(s)	146
BisI	GCNGC	4 cut(s)	50, 138, 259, 422
BlsI	GCNGC	4 cut(s)	51, 139, 260, 423
Bme1390I	CCNGG	4 cut(s)	56, 68, 106, 198
Bme18I	GGWCC	2 cut(s)	61, 108
BmgBI	CACGTC	1 cut(s)	154
BmgT120I	GGNCC	3 cut(s)	61, 108, 291
BmiI	GGNNCC	1 cut(s)	292
BmrFI	CCNGG	4 cut(s)	56, 68, 106, 198
BmsI	GCATC	1 cut(s)	16
BoxI	GACNNNNGTC	1 cut(s)	113
BpiI	GAAGAC	2 cut(s)	89, 172
Bpu10I	CCTNAGC	1 cut(s)	432
BpuEI	CTTGAG	1 cut(s)	188
BpuMI	CCSGG	2 cut(s)	68, 106
BsaHI	GRCGYC	1 cut(s)	123
BsaI	GGTCTC	1 cut(s)	68
BsaJI	CCNNGG	2 cut(s)	126, 132
BsaXI	ACNNNNNCTCC	2 cut(s)	307, 337
Bsc4I	CCNNNNNNNGG	3 cut(s)	70, 105, 394
BseBI	CCWGG	2 cut(s)	56, 198
BseDI	CCNNGG	2 cut(s)	126, 132
BseGI	GGATG	3 cut(s)	31, 241, 312
BseLI	CCNNNNNNNGG	3 cut(s)	70, 105, 394
BseMII	CTCAG	1 cut(s)	446
BseRI	GAGGAG	5 cut(s)	86, 290, 293, 328, 420
BseX3I	CGGCCG	1 cut(s)	147
BseXI	GCAGC	3 cut(s)	61, 124, 408
BsgI	GTGCAG	1 cut(s)	245
Bsh1236I	CGCG	1 cut(s)	120
Bsh1285I	CGRYCG	1 cut(s)	150
BshFI	GGCC	4 cut(s)	131, 149, 201, 293
BsiEI	CGRYCG	1 cut(s)	150
BsiSI	CCGG	3 cut(s)	68, 106, 146
BslFI	GGGAC	1 cut(s)	227
BslI	CCNNNNNNNGG	3 cut(s)	70, 105, 394
BsmAI	GTCTC	1 cut(s)	68
BsmFI	GGGAC	1 cut(s)	227
BsnI	GGCC	4 cut(s)	131, 149, 201, 293
Bso31I	GGTCTC	1 cut(s)	68
Bsp143I	GATC	1 cut(s)	252
Bsp19I	CCATGG	1 cut(s)	132
BspACI	CCGC	3 cut(s)	59, 118, 258
BspANI	GGCC	4 cut(s)	131, 149, 201, 293
BspCNI	CTCAG	1 cut(s)	445
BspFNI	CGCG	1 cut(s)	120
BspLI	GGNNCC	1 cut(s)	292
BspMAI	CTGCAG	1 cut(s)	51
BspMI	ACCTGC	1 cut(s)	217
BspTNI	GGTCTC	1 cut(s)	68
BssECI	CCNNGG	2 cut(s)	126, 132
BssMI	GATC	1 cut(s)	252
BssNI	GRCGYC	1 cut(s)	123
BssT1I	CCWWGG	2 cut(s)	126, 132
Bst2UI	CCWGG	2 cut(s)	56, 198
Bst4CI	ACNGT	2 cut(s)	406, 412
Bst6I	CTCTTC	1 cut(s)	263
BstACI	GRCGYC	1 cut(s)	123
BstDEI	CTNAG	1 cut(s)	432
BstDSI	CCRYGG	1 cut(s)	132
BstENI	CCTNNNNNAGG	1 cut(s)	68
BstF5I	GGATG	3 cut(s)	31, 241, 312
BstFNI	CGCG	1 cut(s)	120
BstKTI	GATC	1 cut(s)	255
BstMAI	GTCTC	1 cut(s)	68
BstMBI	GATC	1 cut(s)	252
BstMCI	CGRYCG	1 cut(s)	150
BstMWI	GCNNNNNNNGC	3 cut(s)	137, 146, 442
BstNI	CCWGG	2 cut(s)	56, 198
BstNSI	RCATGY	1 cut(s)	196
BstPAI	GACNNNNGTC	1 cut(s)	113
BstSCI	CCNGG	4 cut(s)	54, 66, 104, 196
BstSFI	CTRYAG	1 cut(s)	47
BstUI	CGCG	1 cut(s)	120
BstV1I	GCAGC	3 cut(s)	61, 124, 408
BstV2I	GAAGAC	2 cut(s)	89, 172
BstXI	CCANNNNNNTGG	1 cut(s)	133
BstZI	CGGCCG	1 cut(s)	147
BsuRI	GGCC	4 cut(s)	131, 149, 201, 293
BtgI	CCRYGG	1 cut(s)	132
BtrI	CACGTC	1 cut(s)	154
BtsCI	GGATG	3 cut(s)	31, 241, 312
BtsI	GCAGTG	1 cut(s)	44
BtsIMutI	CAGTG	1 cut(s)	44
BveI	ACCTGC	1 cut(s)	217
CaiI	CAGNNNCTG	1 cut(s)	55
Cfr13I	GGNCC	3 cut(s)	61, 108, 291
CseI	GACGC	1 cut(s)	131
CviAII	CATG	2 cut(s)	133, 193
CviJI	RGCY	8 cut(s)	131, 137, 149, 201, 293, 421, 436, 445
CviKI_1	RGCY	8 cut(s)	131, 137, 149, 201, 293, 421, 436, 445
DdeI	CTNAG	1 cut(s)	432
DpnI	GATC	1 cut(s)	254
DpnII	GATC	1 cut(s)	252
EaeI	YGGCCR	1 cut(s)	147
EagI	CGGCCG	1 cut(s)	147
Eam1104I	CTCTTC	1 cut(s)	263
EarI	CTCTTC	1 cut(s)	263
EciI	GGCGGA	1 cut(s)	74
EclXI	CGGCCG	1 cut(s)	147
Eco130I	CCWWGG	2 cut(s)	126, 132
Eco31I	GGTCTC	1 cut(s)	68
Eco47I	GGWCC	2 cut(s)	61, 108
Eco52I	CGGCCG	1 cut(s)	147
EcoNI	CCTNNNNNAGG	1 cut(s)	68
EcoRII	CCWGG	2 cut(s)	54, 196
EcoT14I	CCWWGG	2 cut(s)	126, 132
ErhI	CCWWGG	2 cut(s)	126, 132
FaeI	CATG	2 cut(s)	136, 196
FaiI	YATR	5 cut(s)	134, 177, 194, 300, 332
FaqI	GGGAC	1 cut(s)	227
FatI	CATG	2 cut(s)	132, 192
FbaI	TGATCA	1 cut(s)	252
Fnu4HI	GCNGC	4 cut(s)	50, 138, 259, 422
FokI	GGATG	3 cut(s)	38, 248, 319
Fsp4HI	GCNGC	4 cut(s)	50, 138, 259, 422
GluI	GCNGC	4 cut(s)	50, 138, 259, 422
HaeIII	GGCC	4 cut(s)	131, 149, 201, 293
HapII	CCGG	3 cut(s)	68, 106, 146
HgaI	GACGC	1 cut(s)	131
Hin1I	GRCGYC	1 cut(s)	123
Hin1II	CATG	2 cut(s)	136, 196
HinfI	GANTC	1 cut(s)	12
HpaII	CCGG	3 cut(s)	68, 106, 146
Hpy188I	TCNGA	3 cut(s)	11, 252, 402
Hpy188III	TCNNGA	2 cut(s)	23, 463
Hpy99I	CGWCG	2 cut(s)	125, 155
HpyAV	CCTTC	2 cut(s)	97, 151
HpyCH4III	ACNGT	2 cut(s)	406, 412
HpyCH4IV	ACGT	2 cut(s)	114, 153
HpyCH4V	TGCA	2 cut(s)	49, 226
HpyF10VI	GCNNNNNNNGC	3 cut(s)	137, 146, 442
HpyF3I	CTNAG	1 cut(s)	432
HpySE526I	ACGT	2 cut(s)	114, 153
Hsp92I	GRCGYC	1 cut(s)	123
Hsp92II	CATG	2 cut(s)	136, 196
Ksp22I	TGATCA	1 cut(s)	252
Kzo9I	GATC	1 cut(s)	252
LmnI	GCTCC	1 cut(s)	34
Lsp1109I	GCAGC	3 cut(s)	61, 124, 408
LweI	GCATC	1 cut(s)	16
MaeII	ACGT	2 cut(s)	114, 153
MaeIII	GTNAC	1 cut(s)	406
MalI	GATC	1 cut(s)	254
MboI	GATC	1 cut(s)	252
MboII	GAAGA	4 cut(s)	94, 172, 280, 451
MroXI	GAANNNNTTC	1 cut(s)	86
MseI	TTAA	2 cut(s)	38, 472
MslI	CAYNNNNRTG	2 cut(s)	191, 221
MspA1I	CMGCKG	1 cut(s)	258
MspI	CCGG	3 cut(s)	68, 106, 146
MspR9I	CCNGG	4 cut(s)	56, 68, 106, 198
MvaI	CCWGG	2 cut(s)	56, 198
MvnI	CGCG	1 cut(s)	120
MwoI	GCNNNNNNNGC	3 cut(s)	137, 146, 442
NciI	CCSGG	2 cut(s)	68, 106
NcoI	CCATGG	1 cut(s)	132
NdeII	GATC	1 cut(s)	252
NlaIII	CATG	2 cut(s)	136, 196
NlaIV	GGNNCC	1 cut(s)	292
NmuCI	GTSAC	1 cut(s)	406
NspI	RCATGY	1 cut(s)	196
PaqCI	CACCTGC	1 cut(s)	217
PdmI	GAANNNNTTC	1 cut(s)	86
PfeI	GAWTC	1 cut(s)	12
PfoI	TCCNGGA	1 cut(s)	66
PkrI	GCNGC	4 cut(s)	51, 139, 260, 423
PshAI	GACNNNNGTC	1 cut(s)	113
Psp6I	CCWGG	2 cut(s)	54, 196
PspGI	CCWGG	2 cut(s)	54, 196
PspN4I	GGNNCC	1 cut(s)	292
PspPI	GGNCC	3 cut(s)	61, 108, 291
PstI	CTGCAG	1 cut(s)	51
PstNI	CAGNNNCTG	1 cut(s)	55
RseI	CAYNNNNRTG	2 cut(s)	191, 221
SaqAI	TTAA	2 cut(s)	38, 472
SatI	GCNGC	4 cut(s)	50, 138, 259, 422
Sau3AI	GATC	1 cut(s)	252
Sau96I	GGNCC	3 cut(s)	61, 108, 291
ScrFI	CCNGG	4 cut(s)	56, 68, 106, 198
SfaNI	GCATC	1 cut(s)	16
SfcI	CTRYAG	1 cut(s)	47
SinI	GGWCC	2 cut(s)	61, 108
SmiMI	CAYNNNNRTG	2 cut(s)	191, 221
SmlI	CTYRAG	1 cut(s)	203
SmoI	CTYRAG	1 cut(s)	203
SsiI	CCGC	3 cut(s)	59, 118, 258
StyD4I	CCNGG	4 cut(s)	54, 66, 104, 196
StyI	CCWWGG	2 cut(s)	126, 132
TaaI	ACNGT	2 cut(s)	406, 412
TaiI	ACGT	2 cut(s)	117, 156
TaqI	TCGA	1 cut(s)	189
TaqII	GACCGA	1 cut(s)	92
TauI	GCSGC	1 cut(s)	261
TfiI	GAWTC	1 cut(s)	12
Tru1I	TTAA	2 cut(s)	38, 472
Tru9I	TTAA	2 cut(s)	38, 472
TscAI	CASTG	1 cut(s)	51
TseFI	GTSAC	1 cut(s)	406
TseI	GCWGC	3 cut(s)	49, 137, 421
Tsp45I	GTSAC	1 cut(s)	406
TspRI	CASTG	1 cut(s)	51
VpaK11BI	GGWCC	2 cut(s)	61, 108
XagI	CCTNNNNNAGG	1 cut(s)	68
XceI	RCATGY	1 cut(s)	196
XmnI	GAANNNNTTC	1 cut(s)	86

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.