Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr15

Orthogroup ID

OG0001449

Physical Location & Seq

Genomic Coordinates Forward (+)

3662890 .. 3663356

Gene Structure 467 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD15G1053600.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 402 bp

ATGAGCCAGGTTATGAGCCTGAGGAACATGGGGTTCGATCCCAACCTTCTGGAGACCCTGCACGACTTGCTTGACTTCTCCGACGAGCAGAACCAGCAGAGCCACCTGACCCCTTCGCGCCAGTACGTCCGCGAGGCCAAGGCCATGGCCGCCACGCCCGCAGATGTGAAGGAGACTCCAAACGCCTACGTTTTTGTGGTGGATCGGGGAGAGAAGGAAAAGGGTCAGGGGGTCAAGTATTTGAGGATGGAGAGGAGGCTCGGGGAGTATTTGAAGAAGTTTGTGCTGCCGGAAAATGCAGACACTGAAAAGATTTCGGCCGAGTGTCTTGACGGGGTGCTGACTGTCACCGTGGAGAAGAGGCCGCTACCCGAGCCTAAGAAATCGAAGACTATTCTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04141 map04141

Pfam Domains

Protein Families

HSP20

Protein Analysis

134

Amino Acids

15.14

Weight (kDa)

6.15

Isoelectric Point (pI)

47.33

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
HSP20	PF00011	66 - 132	9.9e-16	Hsp20/alpha crystallin family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001449)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G12020 AT5G12030
fragaria_vesca	FvH4_2g31371
malus_domestica	MD00G1181700.v1.1 MD08G1068000.v1.1 MD08G1068200.v1.1 MD08G1068300.v1.1 MD08G1068500.v1.1 MD08G1068700.v1.1 MD08G1068800.v1.1 MD15G1053500.v1.1 MD15G1053600.v1.1 MD15G1053800.v1.1
prunus_persica	Prupe.1G407100_v2.0.a1 Prupe.1G407200_v2.0.a1 Prupe.1G407300_v2.0.a1
pyrus_communis	pycom08g05660 pycom08g05670
rosa_chinensis	RchiOBHm_Chr6g0311451 RchiOBHm_Chr6g0311461 RchiOBHm_Chr6g0311471
rosa_laevigata	RLG00000010403 RLG00000010404 RLG00000010405
rosa_multiflora	Rmu_co8421495.1_g000001 Rmu_sc0006915.1_g000010 Rmu_sc0006915.1_g000011 Rmu_sc0006915.1_g000012 Rmu_sc0013619.1_g000003 Rmu_sc0013619.1_g000004 Rmu_sc0013619.1_g000006 Rmu_sc0015790.1_g000003 Rmu_sc0015790.1_g000004
rosa_roxburghii	Rroxscaffold_7G00157590 Rroxscaffold_7G00157600
rosa_rugosa	Rorug06G0389100 Rorug06G0389100 Rorug06G0389200
rosa_samantha	Rh2AG205100 Rh2BG216900 Rh2DG211400 Rh6AG503500 Rh6AG503700 Rh6BG514200 Rh6BG514300 Rh6CG520000 Rh6CG520100 Rh6DG506100
rosa_wichuraiana	Rw2G016340 Rw6G043850 Rw6G043860 Rw6G043870

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	2 cut(s)	118, 132
AciI	CCGC	4 cut(s)	130, 150, 159, 365
AclWI	GGATC	2 cut(s)	32, 210
AcoI	YGGCCR	2 cut(s)	147, 318
AfaI	GTAC	1 cut(s)	125
AgsI	TTSAA	1 cut(s)	274
AjnI	CCWGG	1 cut(s)	6
Alw26I	GTCTC	2 cut(s)	47, 167
AlwI	GGATC	2 cut(s)	32, 210
AlwNI	CAGNNNCTG	1 cut(s)	305
Ama87I	CYCGRG	2 cut(s)	260, 371
AoxI	GGCC	5 cut(s)	135, 141, 147, 318, 362
ApeKI	GCWGC	1 cut(s)	286
AspLEI	GCGC	1 cut(s)	120
AsuHPI	GGTGA	1 cut(s)	340
AvaI	CYCGRG	2 cut(s)	260, 371
AxyI	CCTNAGG	1 cut(s)	20
BbsI	GAAGAC	1 cut(s)	395
BbvI	GCAGC	1 cut(s)	273
BccI	CCATC	1 cut(s)	241
BciT130I	CCWGG	1 cut(s)	8
BcoDI	GTCTC	2 cut(s)	47, 167
BisI	GCNGC	3 cut(s)	150, 287, 365
BlsI	GCNGC	3 cut(s)	151, 288, 366
Bme1390I	CCNGG	1 cut(s)	8
BmeT110I	CYCGRG	2 cut(s)	260, 371
BmrFI	CCNGG	1 cut(s)	8
BpiI	GAAGAC	1 cut(s)	395
BpmI	CTGGAG	1 cut(s)	71
BsaI	GGTCTC	1 cut(s)	47
BsaJI	CCNNGG	3 cut(s)	138, 144, 351
Bse1I	ACTGG	1 cut(s)	121
Bse21I	CCTNAGG	1 cut(s)	20
BseBI	CCWGG	1 cut(s)	8
BseDI	CCNNGG	3 cut(s)	138, 144, 351
BseGI	GGATG	1 cut(s)	252
BseMII	CTCAG	1 cut(s)	11
BseNI	ACTGG	1 cut(s)	121
BseRI	GAGGAG	1 cut(s)	268
BseX3I	CGGCCG	1 cut(s)	318
BseXI	GCAGC	1 cut(s)	273
BsgI	GTGCAG	1 cut(s)	44
Bsh1236I	CGCG	2 cut(s)	118, 132
Bsh1285I	CGRYCG	1 cut(s)	321
BshFI	GGCC	5 cut(s)	137, 143, 149, 320, 364
BsiEI	CGRYCG	1 cut(s)	321
BsiHKCI	CYCGRG	2 cut(s)	260, 371
BsiSI	CCGG	1 cut(s)	290
BsmAI	GTCTC	2 cut(s)	47, 167
BsnI	GGCC	5 cut(s)	137, 143, 149, 320, 364
Bso31I	GGTCTC	1 cut(s)	47
BsoBI	CYCGRG	2 cut(s)	260, 371
Bsp143I	GATC	2 cut(s)	37, 202
Bsp19I	CCATGG	1 cut(s)	144
BspACI	CCGC	4 cut(s)	130, 150, 159, 365
BspANI	GGCC	5 cut(s)	137, 143, 149, 320, 364
BspCNI	CTCAG	1 cut(s)	12
BspFNI	CGCG	2 cut(s)	118, 132
BspPI	GGATC	2 cut(s)	32, 210
BspTNI	GGTCTC	1 cut(s)	47
BsrI	ACTGG	1 cut(s)	121
BssECI	CCNNGG	3 cut(s)	138, 144, 351
BssMI	GATC	2 cut(s)	37, 202
BssT1I	CCWWGG	2 cut(s)	138, 144
Bst2UI	CCWGG	1 cut(s)	8
Bst4CI	ACNGT	2 cut(s)	346, 352
Bst6I	CTCTTC	1 cut(s)	353
BstAPI	GCANNNNNTGC	1 cut(s)	67
BstC8I	GCNNGC	1 cut(s)	159
BstDEI	CTNAG	2 cut(s)	20, 378
BstDSI	CCRYGG	2 cut(s)	144, 351
BstF5I	GGATG	1 cut(s)	252
BstFNI	CGCG	2 cut(s)	118, 132
BstHHI	GCGC	1 cut(s)	120
BstKTI	GATC	2 cut(s)	40, 205
BstMAI	GTCTC	2 cut(s)	47, 167
BstMBI	GATC	2 cut(s)	37, 202
BstMCI	CGRYCG	1 cut(s)	321
BstMWI	GCNNNNNNNGC	5 cut(s)	67, 94, 149, 158, 373
BstNI	CCWGG	1 cut(s)	8
BstSCI	CCNGG	1 cut(s)	6
BstUI	CGCG	2 cut(s)	118, 132
BstV1I	GCAGC	1 cut(s)	273
BstV2I	GAAGAC	1 cut(s)	395
BstXI	CCANNNNNNTGG	2 cut(s)	49, 145
BstZI	CGGCCG	1 cut(s)	318
Bsu36I	CCTNAGG	1 cut(s)	20
BsuRI	GGCC	5 cut(s)	137, 143, 149, 320, 364
BtgI	CCRYGG	2 cut(s)	144, 351
BtsCI	GGATG	1 cut(s)	252
BtsIMutI	CAGTG	1 cut(s)	303
Cac8I	GCNNGC	1 cut(s)	159
CaiI	CAGNNNCTG	1 cut(s)	305
CfoI	GCGC	1 cut(s)	120
Csp6I	GTAC	1 cut(s)	124
CviAII	CATG	2 cut(s)	28, 145
CviQI	GTAC	1 cut(s)	124
DdeI	CTNAG	2 cut(s)	20, 378
DpnI	GATC	2 cut(s)	39, 204
DpnII	GATC	2 cut(s)	37, 202
EaeI	YGGCCR	2 cut(s)	147, 318
EagI	CGGCCG	1 cut(s)	318
Eam1104I	CTCTTC	1 cut(s)	353
EarI	CTCTTC	1 cut(s)	353
EclXI	CGGCCG	1 cut(s)	318
Eco130I	CCWWGG	2 cut(s)	138, 144
Eco31I	GGTCTC	1 cut(s)	47
Eco52I	CGGCCG	1 cut(s)	318
Eco81I	CCTNAGG	1 cut(s)	20
Eco88I	CYCGRG	2 cut(s)	260, 371
EcoRII	CCWGG	1 cut(s)	6
EcoT14I	CCWWGG	2 cut(s)	138, 144
ErhI	CCWWGG	2 cut(s)	138, 144
FaeI	CATG	2 cut(s)	31, 148
FaiI	YATR	3 cut(s)	14, 29, 146
FatI	CATG	2 cut(s)	27, 144
FauI	CCCGC	1 cut(s)	166
Fnu4HI	GCNGC	3 cut(s)	150, 287, 365
FokI	GGATG	1 cut(s)	259
Fsp4HI	GCNGC	3 cut(s)	150, 287, 365
GlaI	GCGC	1 cut(s)	119
GluI	GCNGC	3 cut(s)	150, 287, 365
GsuI	CTGGAG	1 cut(s)	71
HaeIII	GGCC	5 cut(s)	137, 143, 149, 320, 364
HapII	CCGG	1 cut(s)	290
HhaI	GCGC	1 cut(s)	120
Hin1II	CATG	2 cut(s)	31, 148
Hin6I	GCGC	1 cut(s)	118
HinP1I	GCGC	1 cut(s)	118
HinfI	GANTC	1 cut(s)	175
HpaII	CCGG	1 cut(s)	290
HphI	GGTGA	1 cut(s)	340
Hpy188I	TCNGA	1 cut(s)	82
Hpy188III	TCNNGA	2 cut(s)	50, 329
Hpy99I	CGWCG	1 cut(s)	86
HpyAV	CCTTC	4 cut(s)	56, 123, 163, 208
HpyCH4III	ACNGT	2 cut(s)	346, 352
HpyCH4IV	ACGT	2 cut(s)	126, 189
HpyCH4V	TGCA	2 cut(s)	61, 299
HpyF10VI	GCNNNNNNNGC	5 cut(s)	67, 94, 149, 158, 373
HpyF3I	CTNAG	2 cut(s)	20, 378
HpySE526I	ACGT	2 cut(s)	126, 189
Hsp92II	CATG	2 cut(s)	31, 148
HspAI	GCGC	1 cut(s)	118
Kzo9I	GATC	2 cut(s)	37, 202
LpnPI	CCDG	9 cut(s)	20, 32, 35, 71, 107, 119, 134, 212, 303
Lsp1109I	GCAGC	1 cut(s)	273
MaeII	ACGT	2 cut(s)	126, 189
MaeIII	GTNAC	1 cut(s)	346
MalI	GATC	2 cut(s)	39, 204
MboI	GATC	2 cut(s)	37, 202
MboII	GAAGA	3 cut(s)	286, 370, 400
MlyI	GAGTC	1 cut(s)	169
MmeI	TCCRAC	1 cut(s)	105
MnlI	CCTC	6 cut(s)	15, 127, 237, 246, 249, 354
MspI	CCGG	1 cut(s)	290
MspR9I	CCNGG	1 cut(s)	8
MvaI	CCWGG	1 cut(s)	8
MvnI	CGCG	2 cut(s)	118, 132
MwoI	GCNNNNNNNGC	5 cut(s)	67, 94, 149, 158, 373
NcoI	CCATGG	1 cut(s)	144
NdeII	GATC	2 cut(s)	37, 202
NlaIII	CATG	2 cut(s)	31, 148
NmeAIII	GCCGAG	1 cut(s)	346
NmuCI	GTSAC	1 cut(s)	346
PkrI	GCNGC	3 cut(s)	151, 288, 366
PleI	GAGTC	1 cut(s)	169
PpsI	GAGTC	1 cut(s)	169
Psp6I	CCWGG	1 cut(s)	6
PspGI	CCWGG	1 cut(s)	6
PstNI	CAGNNNCTG	1 cut(s)	305
RsaI	GTAC	1 cut(s)	125
RsaNI	GTAC	1 cut(s)	124
SatI	GCNGC	3 cut(s)	150, 287, 365
Sau3AI	GATC	2 cut(s)	37, 202
SchI	GAGTC	1 cut(s)	169
ScrFI	CCNGG	1 cut(s)	8
SetI	ASST	5 cut(s)	12, 48, 108, 129, 192
SsiI	CCGC	4 cut(s)	130, 150, 159, 365
StyD4I	CCNGG	1 cut(s)	6
StyI	CCWWGG	2 cut(s)	138, 144
TaaI	ACNGT	2 cut(s)	346, 352
TaiI	ACGT	2 cut(s)	129, 192
TaqI	TCGA	2 cut(s)	36, 386
TauI	GCSGC	2 cut(s)	152, 367
TscAI	CASTG	1 cut(s)	310
TseFI	GTSAC	1 cut(s)	346
TseI	GCWGC	1 cut(s)	286
Tsp45I	GTSAC	1 cut(s)	346
TspRI	CASTG	1 cut(s)	310

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.