Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0006915.1

Orthogroup ID

OG0001449

Physical Location & Seq

Genomic Coordinates Reverse (-)

33886 .. 34344

Gene Structure 459 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0006915.1_g000010.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 459 bp

atgggtctggatgctccaatcttagcagcactgcagcacctggcggacctcccggaggagaccgagaagaccttcaacaacgcccccacccggacctacgtccgcgacgccaaggccatggctgccactccggccgacgtgaaggagttgcccaattcctatgtcttcgtcatcgacatgcctggcctcaagtcaggggacatcaaggtgcaggtggaggatgacaatgtgcttctgatcagcggcgagaggaagagggaggaggagaaagagggggccaagtatgtgaggatggagaggagggtcggtaagtttatgaggaagtttgttctgcctgagaatgctaatgctgataccatttctgctgtttgccaagatggggttctgactgtgactgtggagaagctgccacctcctcagccgaagaagcccaagactattgaggtcaagattggttaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006950 GO:0008150 GO:0009266 GO:0009408 GO:0009628 GO:0044424 GO:0044464 GO:0050896

KEGG Pathways

Metabolic & Signaling

ko04141 map04141

Pfam Domains

Protein Families

HSP20

Protein Analysis

152

Amino Acids

16.83

Weight (kDa)

5.95

Isoelectric Point (pI)

42.57

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001449)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G12020 AT5G12030
fragaria_vesca	FvH4_2g31371
malus_domestica	MD00G1181700.v1.1 MD08G1068000.v1.1 MD08G1068200.v1.1 MD08G1068300.v1.1 MD08G1068500.v1.1 MD08G1068700.v1.1 MD08G1068800.v1.1 MD15G1053500.v1.1 MD15G1053600.v1.1 MD15G1053800.v1.1
prunus_persica	Prupe.1G407100_v2.0.a1 Prupe.1G407200_v2.0.a1 Prupe.1G407300_v2.0.a1
pyrus_communis	pycom08g05660 pycom08g05670
rosa_chinensis	RchiOBHm_Chr6g0311451 RchiOBHm_Chr6g0311461 RchiOBHm_Chr6g0311471
rosa_laevigata	RLG00000010403 RLG00000010404 RLG00000010405
rosa_multiflora	Rmu_co8421495.1_g000001 Rmu_sc0006915.1_g000010 Rmu_sc0006915.1_g000011 Rmu_sc0006915.1_g000012 Rmu_sc0013619.1_g000003 Rmu_sc0013619.1_g000004 Rmu_sc0013619.1_g000006 Rmu_sc0015790.1_g000003 Rmu_sc0015790.1_g000004
rosa_roxburghii	Rroxscaffold_7G00157590 Rroxscaffold_7G00157600
rosa_rugosa	Rorug06G0389100 Rorug06G0389100 Rorug06G0389200
rosa_samantha	Rh2AG205100 Rh2BG216900 Rh2DG211400 Rh6AG503500 Rh6AG503700 Rh6BG514200 Rh6BG514300 Rh6CG520000 Rh6CG520100 Rh6DG506100
rosa_wichuraiana	Rw2G016340 Rw6G043850 Rw6G043860 Rw6G043870

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	202
Acc36I	ACCTGC	1 cut(s)	202
AccII	CGCG	1 cut(s)	105
AciI	CCGC	3 cut(s)	44, 103, 243
AcoI	YGGCCR	1 cut(s)	132
AcyI	GRCGYC	1 cut(s)	108
AfiI	CCNNNNNNNGG	3 cut(s)	55, 90, 379
AgsI	TTSAA	1 cut(s)	76
AjiI	CACGTC	1 cut(s)	139
AjnI	CCWGG	2 cut(s)	39, 181
AjuI	GAANNNNNNNTTGG	2 cut(s)	366, 398
AluBI	AGCT	1 cut(s)	406
AluI	AGCT	1 cut(s)	406
Alw26I	GTCTC	1 cut(s)	53
AlwNI	CAGNNNCTG	1 cut(s)	40
AoxI	GGCC	4 cut(s)	114, 132, 184, 276
ApeKI	GCWGC	4 cut(s)	26, 34, 122, 406
Asp700I	GAANNNNTTC	1 cut(s)	71
AspS9I	GGNCC	3 cut(s)	46, 93, 276
AsuC2I	CCSGG	2 cut(s)	53, 91
AvaII	GGWCC	2 cut(s)	46, 93
BbsI	GAAGAC	2 cut(s)	74, 157
BbvCI	CCTCAGC	1 cut(s)	417
BbvI	GCAGC	4 cut(s)	38, 46, 109, 393
BccI	CCATC	2 cut(s)	286, 371
BciT130I	CCWGG	2 cut(s)	41, 183
BclI	TGATCA	1 cut(s)	237
BcnI	CCSGG	2 cut(s)	53, 91
BcoDI	GTCTC	1 cut(s)	53
BfmI	CTRYAG	1 cut(s)	32
BfuAI	ACCTGC	1 cut(s)	202
BglI	GCCNNNNNGGC	1 cut(s)	131
BisI	GCNGC	5 cut(s)	27, 35, 123, 244, 407
BlsI	GCNGC	5 cut(s)	28, 36, 124, 245, 408
Bme1390I	CCNGG	4 cut(s)	41, 53, 91, 183
Bme18I	GGWCC	2 cut(s)	46, 93
BmgBI	CACGTC	1 cut(s)	139
BmgT120I	GGNCC	3 cut(s)	46, 93, 276
BmiI	GGNNCC	1 cut(s)	277
BmrFI	CCNGG	4 cut(s)	41, 53, 91, 183
BoxI	GACNNNNGTC	1 cut(s)	98
BpiI	GAAGAC	2 cut(s)	74, 157
Bpu10I	CCTNAGC	1 cut(s)	417
BpuEI	CTTGAG	1 cut(s)	173
BpuMI	CCSGG	2 cut(s)	53, 91
BsaHI	GRCGYC	1 cut(s)	108
BsaI	GGTCTC	1 cut(s)	53
BsaJI	CCNNGG	2 cut(s)	111, 117
BsaXI	ACNNNNNCTCC	2 cut(s)	292, 322
Bsc4I	CCNNNNNNNGG	3 cut(s)	55, 90, 379
BseBI	CCWGG	2 cut(s)	41, 183
BseDI	CCNNGG	2 cut(s)	111, 117
BseGI	GGATG	3 cut(s)	16, 226, 297
BseLI	CCNNNNNNNGG	3 cut(s)	55, 90, 379
BseMII	CTCAG	2 cut(s)	327, 431
BseRI	GAGGAG	5 cut(s)	71, 275, 278, 313, 405
BseX3I	CGGCCG	1 cut(s)	132
BseXI	GCAGC	4 cut(s)	38, 46, 109, 393
BsgI	GTGCAG	1 cut(s)	230
Bsh1236I	CGCG	1 cut(s)	105
Bsh1285I	CGRYCG	1 cut(s)	135
BshFI	GGCC	4 cut(s)	116, 134, 186, 278
BsiEI	CGRYCG	1 cut(s)	135
BsiSI	CCGG	3 cut(s)	53, 91, 131
BslFI	GGGAC	1 cut(s)	212
BslI	CCNNNNNNNGG	3 cut(s)	55, 90, 379
BsmAI	GTCTC	1 cut(s)	53
BsmFI	GGGAC	1 cut(s)	212
BsmI	GAATGC	1 cut(s)	346
BsnI	GGCC	4 cut(s)	116, 134, 186, 278
Bso31I	GGTCTC	1 cut(s)	53
Bsp143I	GATC	1 cut(s)	237
Bsp19I	CCATGG	1 cut(s)	117
BspACI	CCGC	3 cut(s)	44, 103, 243
BspANI	GGCC	4 cut(s)	116, 134, 186, 278
BspCNI	CTCAG	2 cut(s)	328, 430
BspFNI	CGCG	1 cut(s)	105
BspLI	GGNNCC	1 cut(s)	277
BspMAI	CTGCAG	1 cut(s)	36
BspMI	ACCTGC	1 cut(s)	202
BspTNI	GGTCTC	1 cut(s)	53
BssECI	CCNNGG	2 cut(s)	111, 117
BssMI	GATC	1 cut(s)	237
BssNI	GRCGYC	1 cut(s)	108
BssT1I	CCWWGG	2 cut(s)	111, 117
Bst2UI	CCWGG	2 cut(s)	41, 183
Bst4CI	ACNGT	2 cut(s)	391, 397
Bst6I	CTCTTC	1 cut(s)	248
BstACI	GRCGYC	1 cut(s)	108
BstDEI	CTNAG	3 cut(s)	22, 336, 417
BstDSI	CCRYGG	1 cut(s)	117
BstENI	CCTNNNNNAGG	1 cut(s)	53
BstF5I	GGATG	3 cut(s)	16, 226, 297
BstFNI	CGCG	1 cut(s)	105
BstKTI	GATC	1 cut(s)	240
BstMAI	GTCTC	1 cut(s)	53
BstMBI	GATC	1 cut(s)	237
BstMCI	CGRYCG	1 cut(s)	135
BstMWI	GCNNNNNNNGC	3 cut(s)	122, 131, 427
BstNI	CCWGG	2 cut(s)	41, 183
BstNSI	RCATGY	1 cut(s)	181
BstPAI	GACNNNNGTC	1 cut(s)	98
BstSCI	CCNGG	4 cut(s)	39, 51, 89, 181
BstSFI	CTRYAG	1 cut(s)	32
BstUI	CGCG	1 cut(s)	105
BstV1I	GCAGC	4 cut(s)	38, 46, 109, 393
BstV2I	GAAGAC	2 cut(s)	74, 157
BstXI	CCANNNNNNTGG	1 cut(s)	118
BstZI	CGGCCG	1 cut(s)	132
BsuRI	GGCC	4 cut(s)	116, 134, 186, 278
BtgI	CCRYGG	1 cut(s)	117
BtrI	CACGTC	1 cut(s)	139
BtsCI	GGATG	3 cut(s)	16, 226, 297
BtsI	GCAGTG	1 cut(s)	29
BtsIMutI	CAGTG	1 cut(s)	29
BveI	ACCTGC	1 cut(s)	202
CaiI	CAGNNNCTG	1 cut(s)	40
Cfr13I	GGNCC	3 cut(s)	46, 93, 276
CseI	GACGC	1 cut(s)	116
CviAII	CATG	2 cut(s)	118, 178
CviJI	RGCY	8 cut(s)	116, 122, 134, 186, 278, 406, 421, 430
CviKI_1	RGCY	8 cut(s)	116, 122, 134, 186, 278, 406, 421, 430
DdeI	CTNAG	3 cut(s)	22, 336, 417
DpnI	GATC	1 cut(s)	239
DpnII	GATC	1 cut(s)	237
EaeI	YGGCCR	1 cut(s)	132
EagI	CGGCCG	1 cut(s)	132
Eam1104I	CTCTTC	1 cut(s)	248
EarI	CTCTTC	1 cut(s)	248
EciI	GGCGGA	1 cut(s)	59
EclXI	CGGCCG	1 cut(s)	132
Eco130I	CCWWGG	2 cut(s)	111, 117
Eco31I	GGTCTC	1 cut(s)	53
Eco47I	GGWCC	2 cut(s)	46, 93
Eco52I	CGGCCG	1 cut(s)	132
EcoNI	CCTNNNNNAGG	1 cut(s)	53
EcoRII	CCWGG	2 cut(s)	39, 181
EcoT14I	CCWWGG	2 cut(s)	111, 117
ErhI	CCWWGG	2 cut(s)	111, 117
FaeI	CATG	2 cut(s)	121, 181
FaiI	YATR	5 cut(s)	119, 162, 179, 285, 317
FaqI	GGGAC	1 cut(s)	212
FatI	CATG	2 cut(s)	117, 177
FbaI	TGATCA	1 cut(s)	237
Fnu4HI	GCNGC	5 cut(s)	27, 35, 123, 244, 407
FokI	GGATG	3 cut(s)	23, 233, 304
Fsp4HI	GCNGC	5 cut(s)	27, 35, 123, 244, 407
GluI	GCNGC	5 cut(s)	27, 35, 123, 244, 407
HaeIII	GGCC	4 cut(s)	116, 134, 186, 278
HapII	CCGG	3 cut(s)	53, 91, 131
HgaI	GACGC	1 cut(s)	116
Hin1I	GRCGYC	1 cut(s)	108
Hin1II	CATG	2 cut(s)	121, 181
HpaII	CCGG	3 cut(s)	53, 91, 131
Hpy188I	TCNGA	2 cut(s)	237, 387
Hpy188III	TCNNGA	2 cut(s)	8, 448
Hpy99I	CGWCG	2 cut(s)	110, 140
HpyAV	CCTTC	2 cut(s)	82, 136
HpyCH4III	ACNGT	2 cut(s)	391, 397
HpyCH4IV	ACGT	2 cut(s)	99, 138
HpyCH4V	TGCA	2 cut(s)	34, 211
HpyF10VI	GCNNNNNNNGC	3 cut(s)	122, 131, 427
HpyF3I	CTNAG	3 cut(s)	22, 336, 417
HpySE526I	ACGT	2 cut(s)	99, 138
Hsp92I	GRCGYC	1 cut(s)	108
Hsp92II	CATG	2 cut(s)	121, 181
Ksp22I	TGATCA	1 cut(s)	237
Kzo9I	GATC	1 cut(s)	237
LmnI	GCTCC	1 cut(s)	19
Lsp1109I	GCAGC	4 cut(s)	38, 46, 109, 393
MaeII	ACGT	2 cut(s)	99, 138
MaeIII	GTNAC	1 cut(s)	391
MalI	GATC	1 cut(s)	239
MboI	GATC	1 cut(s)	237
MboII	GAAGA	4 cut(s)	79, 157, 265, 436
MluCI	AATT	1 cut(s)	154
MroXI	GAANNNNTTC	1 cut(s)	71
MseI	TTAA	1 cut(s)	457
MslI	CAYNNNNRTG	2 cut(s)	176, 206
MspA1I	CMGCKG	1 cut(s)	243
MspI	CCGG	3 cut(s)	53, 91, 131
MspR9I	CCNGG	4 cut(s)	41, 53, 91, 183
Mva1269I	GAATGC	1 cut(s)	346
MvaI	CCWGG	2 cut(s)	41, 183
MvnI	CGCG	1 cut(s)	105
MwoI	GCNNNNNNNGC	3 cut(s)	122, 131, 427
NciI	CCSGG	2 cut(s)	53, 91
NcoI	CCATGG	1 cut(s)	117
NdeII	GATC	1 cut(s)	237
NlaIII	CATG	2 cut(s)	121, 181
NlaIV	GGNNCC	1 cut(s)	277
NmuCI	GTSAC	1 cut(s)	391
NspI	RCATGY	1 cut(s)	181
PaqCI	CACCTGC	1 cut(s)	202
PctI	GAATGC	1 cut(s)	346
PdmI	GAANNNNTTC	1 cut(s)	71
PfoI	TCCNGGA	1 cut(s)	51
PkrI	GCNGC	5 cut(s)	28, 36, 124, 245, 408
PshAI	GACNNNNGTC	1 cut(s)	98
Psp6I	CCWGG	2 cut(s)	39, 181
PspGI	CCWGG	2 cut(s)	39, 181
PspN4I	GGNNCC	1 cut(s)	277
PspPI	GGNCC	3 cut(s)	46, 93, 276
PstI	CTGCAG	1 cut(s)	36
PstNI	CAGNNNCTG	1 cut(s)	40
RseI	CAYNNNNRTG	2 cut(s)	176, 206
SaqAI	TTAA	1 cut(s)	457
SatI	GCNGC	5 cut(s)	27, 35, 123, 244, 407
Sau3AI	GATC	1 cut(s)	237
Sau96I	GGNCC	3 cut(s)	46, 93, 276
ScrFI	CCNGG	4 cut(s)	41, 53, 91, 183
SfcI	CTRYAG	1 cut(s)	32
SinI	GGWCC	2 cut(s)	46, 93
SmiMI	CAYNNNNRTG	2 cut(s)	176, 206
SmlI	CTYRAG	1 cut(s)	188
SmoI	CTYRAG	1 cut(s)	188
Sse9I	AATT	1 cut(s)	154
SsiI	CCGC	3 cut(s)	44, 103, 243
StyD4I	CCNGG	4 cut(s)	39, 51, 89, 181
StyI	CCWWGG	2 cut(s)	111, 117
TaaI	ACNGT	2 cut(s)	391, 397
TaiI	ACGT	2 cut(s)	102, 141
TaqI	TCGA	1 cut(s)	174
TaqII	GACCGA	1 cut(s)	77
TasI	AATT	1 cut(s)	154
TauI	GCSGC	1 cut(s)	246
Tru1I	TTAA	1 cut(s)	457
Tru9I	TTAA	1 cut(s)	457
TscAI	CASTG	1 cut(s)	36
TseFI	GTSAC	1 cut(s)	391
TseI	GCWGC	4 cut(s)	26, 34, 122, 406
Tsp45I	GTSAC	1 cut(s)	391
TspRI	CASTG	1 cut(s)	36
VpaK11BI	GGWCC	2 cut(s)	46, 93
XagI	CCTNNNNNAGG	1 cut(s)	53
XceI	RCATGY	1 cut(s)	181
XmnI	GAANNNNTTC	1 cut(s)	71

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.