Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8421495.1

Orthogroup ID

OG0001449

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 709

Gene Structure 709 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8421495.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 349 bp

gggcagaagcgtcttttggacttggcttcgacgactgagagtggccgtgcgcggcagatttccaaagcactcaaacatattagagctctcaaaaccaatcaaagcaaacattccagtgattccaccaaccaagaagagaaaaatggattttagaatcatgggtctggatgctccaatcttaatggcactgcagcacctagtggacctcccggaggagatcaagaagacctttaacgtctcgaccctgacctacgtccgtgacaccaaggctatggctgccactccggccgacgtgaaggagttacccaattcctatgtcttcgtcatcgacatgcctggacttaagtaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006950 GO:0008150 GO:0009266 GO:0009408 GO:0009628 GO:0044424 GO:0044464 GO:0050896

KEGG Pathways

Metabolic & Signaling

ko04141 map04141

Pfam Domains

Protein Families

HSP20

Protein Analysis

115

Amino Acids

13.16

Weight (kDa)

10.32

Isoelectric Point (pI)

56.44

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001449)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G12020 AT5G12030
fragaria_vesca	FvH4_2g31371
malus_domestica	MD00G1181700.v1.1 MD08G1068000.v1.1 MD08G1068200.v1.1 MD08G1068300.v1.1 MD08G1068500.v1.1 MD08G1068700.v1.1 MD08G1068800.v1.1 MD15G1053500.v1.1 MD15G1053600.v1.1 MD15G1053800.v1.1
prunus_persica	Prupe.1G407100_v2.0.a1 Prupe.1G407200_v2.0.a1 Prupe.1G407300_v2.0.a1
pyrus_communis	pycom08g05660 pycom08g05670
rosa_chinensis	RchiOBHm_Chr6g0311451 RchiOBHm_Chr6g0311461 RchiOBHm_Chr6g0311471
rosa_laevigata	RLG00000010403 RLG00000010404 RLG00000010405
rosa_multiflora	Rmu_co8421495.1_g000001 Rmu_sc0006915.1_g000010 Rmu_sc0006915.1_g000011 Rmu_sc0006915.1_g000012 Rmu_sc0013619.1_g000003 Rmu_sc0013619.1_g000004 Rmu_sc0013619.1_g000006 Rmu_sc0015790.1_g000003 Rmu_sc0015790.1_g000004
rosa_roxburghii	Rroxscaffold_7G00157590 Rroxscaffold_7G00157600
rosa_rugosa	Rorug06G0389100 Rorug06G0389100 Rorug06G0389200
rosa_samantha	Rh2AG205100 Rh2BG216900 Rh2DG211400 Rh6AG503500 Rh6AG503700 Rh6BG514200 Rh6BG514300 Rh6CG520000 Rh6CG520100 Rh6DG506100
rosa_wichuraiana	Rw2G016340 Rw6G043850 Rw6G043860 Rw6G043870

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	52
AciI	CCGC	1 cut(s)	52
AcoI	YGGCCR	2 cut(s)	43, 286
AdeI	CACNNNGTG	1 cut(s)	200
AfiI	CCNNNNNNNGG	1 cut(s)	212
AflII	CTTAAG	1 cut(s)	342
AjiI	CACGTC	1 cut(s)	293
AjnI	CCWGG	1 cut(s)	335
AjuI	GAANNNNNNNTTGG	1 cut(s)	31
AluBI	AGCT	1 cut(s)	86
AluI	AGCT	1 cut(s)	86
Alw21I	GWGCWC	1 cut(s)	88
Alw26I	GTCTC	1 cut(s)	242
AoxI	GGCC	2 cut(s)	43, 286
ApeKI	GCWGC	2 cut(s)	191, 276
AspLEI	GCGC	1 cut(s)	52
AspS9I	GGNCC	1 cut(s)	203
AsuC2I	CCSGG	1 cut(s)	210
AvaII	GGWCC	1 cut(s)	203
BanII	GRGCYC	1 cut(s)	88
BbsI	GAAGAC	2 cut(s)	231, 311
Bbv12I	GWGCWC	1 cut(s)	88
BbvI	GCAGC	2 cut(s)	203, 263
BceAI	ACGGC	1 cut(s)	30
BciT130I	CCWGG	1 cut(s)	337
BcnI	CCSGG	1 cut(s)	210
BcoDI	GTCTC	1 cut(s)	242
BfaI	CTAG	1 cut(s)	198
BfmI	CTRYAG	1 cut(s)	189
BfrI	CTTAAG	1 cut(s)	342
BglI	GCCNNNNNGGC	1 cut(s)	285
BisI	GCNGC	3 cut(s)	53, 192, 277
BlsI	GCNGC	3 cut(s)	54, 193, 278
Bme1390I	CCNGG	2 cut(s)	210, 337
Bme18I	GGWCC	1 cut(s)	203
BmgBI	CACGTC	1 cut(s)	293
BmgT120I	GGNCC	1 cut(s)	203
BmrFI	CCNGG	2 cut(s)	210, 337
BmsI	GCATC	1 cut(s)	158
BoxI	GACNNNNGTC	1 cut(s)	252
BpiI	GAAGAC	2 cut(s)	231, 311
BpuMI	CCSGG	1 cut(s)	210
BsaJI	CCNNGG	1 cut(s)	265
Bsc4I	CCNNNNNNNGG	1 cut(s)	212
Bse1I	ACTGG	1 cut(s)	114
BseBI	CCWGG	1 cut(s)	337
BseDI	CCNNGG	1 cut(s)	265
BseGI	GGATG	1 cut(s)	173
BseLI	CCNNNNNNNGG	1 cut(s)	212
BseMII	CTCAG	1 cut(s)	27
BseNI	ACTGG	1 cut(s)	114
BseRI	GAGGAG	1 cut(s)	228
BseX3I	CGGCCG	1 cut(s)	286
BseXI	GCAGC	2 cut(s)	203, 263
Bsh1236I	CGCG	1 cut(s)	52
Bsh1285I	CGRYCG	1 cut(s)	289
BshFI	GGCC	2 cut(s)	45, 288
BsiEI	CGRYCG	1 cut(s)	289
BsiHKAI	GWGCWC	1 cut(s)	88
BsiSI	CCGG	2 cut(s)	210, 285
BslI	CCNNNNNNNGG	1 cut(s)	212
BsmAI	GTCTC	1 cut(s)	242
BsmBI	CGTCTC	1 cut(s)	242
BsnI	GGCC	2 cut(s)	45, 288
Bsp1286I	GDGCHC	1 cut(s)	88
Bsp143I	GATC	1 cut(s)	217
BspACI	CCGC	1 cut(s)	52
BspANI	GGCC	2 cut(s)	45, 288
BspCNI	CTCAG	1 cut(s)	28
BspFNI	CGCG	1 cut(s)	52
BspMAI	CTGCAG	1 cut(s)	193
BspTI	CTTAAG	1 cut(s)	342
BsrI	ACTGG	1 cut(s)	114
BssECI	CCNNGG	1 cut(s)	265
BssMI	GATC	1 cut(s)	217
BssT1I	CCWWGG	1 cut(s)	265
Bst2UI	CCWGG	1 cut(s)	337
Bst6I	CTCTTC	1 cut(s)	129
BstAFI	CTTAAG	1 cut(s)	342
BstDEI	CTNAG	1 cut(s)	36
BstENI	CCTNNNNNAGG	1 cut(s)	210
BstF5I	GGATG	1 cut(s)	173
BstFNI	CGCG	1 cut(s)	52
BstHHI	GCGC	1 cut(s)	52
BstKTI	GATC	1 cut(s)	220
BstMAI	GTCTC	1 cut(s)	242
BstMBI	GATC	1 cut(s)	217
BstMCI	CGRYCG	1 cut(s)	289
BstMWI	GCNNNNNNNGC	2 cut(s)	276, 285
BstNI	CCWGG	1 cut(s)	337
BstNSI	RCATGY	1 cut(s)	335
BstPAI	GACNNNNGTC	1 cut(s)	252
BstSCI	CCNGG	2 cut(s)	208, 335
BstSFI	CTRYAG	1 cut(s)	189
BstUI	CGCG	1 cut(s)	52
BstV1I	GCAGC	2 cut(s)	203, 263
BstV2I	GAAGAC	2 cut(s)	231, 311
BstXI	CCANNNNNNTGG	1 cut(s)	272
BstZI	CGGCCG	1 cut(s)	286
BsuRI	GGCC	2 cut(s)	45, 288
BtrI	CACGTC	1 cut(s)	293
BtsCI	GGATG	1 cut(s)	173
BtsI	GCAGTG	1 cut(s)	186
BtsIMutI	CAGTG	2 cut(s)	121, 186
CfoI	GCGC	1 cut(s)	52
Cfr13I	GGNCC	1 cut(s)	203
CviAII	CATG	2 cut(s)	158, 332
CviJI	RGCY	6 cut(s)	26, 45, 86, 270, 276, 288
CviKI_1	RGCY	6 cut(s)	26, 45, 86, 270, 276, 288
DdeI	CTNAG	1 cut(s)	36
DpnI	GATC	1 cut(s)	219
DpnII	GATC	1 cut(s)	217
DraIII	CACNNNGTG	1 cut(s)	200
EaeI	YGGCCR	2 cut(s)	43, 286
EagI	CGGCCG	1 cut(s)	286
Eam1104I	CTCTTC	1 cut(s)	129
EarI	CTCTTC	1 cut(s)	129
Ecl136II	GAGCTC	1 cut(s)	86
EclXI	CGGCCG	1 cut(s)	286
Eco130I	CCWWGG	1 cut(s)	265
Eco24I	GRGCYC	1 cut(s)	88
Eco47I	GGWCC	1 cut(s)	203
Eco52I	CGGCCG	1 cut(s)	286
Eco53kI	GAGCTC	1 cut(s)	86
EcoICRI	GAGCTC	1 cut(s)	86
EcoNI	CCTNNNNNAGG	1 cut(s)	210
EcoRII	CCWGG	1 cut(s)	335
EcoT14I	CCWWGG	1 cut(s)	265
EcoT38I	GRGCYC	1 cut(s)	88
ErhI	CCWWGG	1 cut(s)	265
Esp3I	CGTCTC	1 cut(s)	242
FaeI	CATG	2 cut(s)	161, 335
FaiI	YATR	5 cut(s)	78, 159, 273, 316, 333
FalI	AAGNNNNNCTT	2 cut(s)	213, 245
FatI	CATG	2 cut(s)	157, 331
Fnu4HI	GCNGC	3 cut(s)	53, 192, 277
FokI	GGATG	1 cut(s)	180
FriOI	GRGCYC	1 cut(s)	88
Fsp4HI	GCNGC	3 cut(s)	53, 192, 277
FspBI	CTAG	1 cut(s)	198
GlaI	GCGC	1 cut(s)	51
GluI	GCNGC	3 cut(s)	53, 192, 277
HaeIII	GGCC	2 cut(s)	45, 288
HapII	CCGG	2 cut(s)	210, 285
HhaI	GCGC	1 cut(s)	52
Hin1II	CATG	2 cut(s)	161, 335
Hin6I	GCGC	1 cut(s)	50
HinP1I	GCGC	1 cut(s)	50
HinfI	GANTC	2 cut(s)	119, 154
HpaII	CCGG	2 cut(s)	210, 285
Hpy166II	GTNNAC	1 cut(s)	203
Hpy188III	TCNNGA	3 cut(s)	165, 221, 239
Hpy8I	GTNNAC	1 cut(s)	203
Hpy99I	CGWCG	2 cut(s)	34, 294
HpyAV	CCTTC	1 cut(s)	290
HpyCH4IV	ACGT	3 cut(s)	235, 253, 292
HpyCH4V	TGCA	1 cut(s)	191
HpyF10VI	GCNNNNNNNGC	2 cut(s)	276, 285
HpyF3I	CTNAG	1 cut(s)	36
HpySE526I	ACGT	3 cut(s)	235, 253, 292
Hsp92II	CATG	2 cut(s)	161, 335
HspAI	GCGC	1 cut(s)	50
Kzo9I	GATC	1 cut(s)	217
LmnI	GCTCC	1 cut(s)	176
LpnPI	CCDG	6 cut(s)	127, 150, 223, 258, 298, 322
Lsp1109I	GCAGC	2 cut(s)	203, 263
LweI	GCATC	1 cut(s)	158
MaeI	CTAG	1 cut(s)	198
MaeII	ACGT	3 cut(s)	235, 253, 292
MaeIII	GTNAC	2 cut(s)	258, 301
MalI	GATC	1 cut(s)	219
MboI	GATC	1 cut(s)	217
MboII	GAAGA	3 cut(s)	146, 236, 311
MhlI	GDGCHC	1 cut(s)	88
MluCI	AATT	1 cut(s)	308
MnlI	CCTC	2 cut(s)	206, 216
MseI	TTAA	3 cut(s)	180, 232, 343
MslI	CAYNNNNRTG	2 cut(s)	114, 330
MspCI	CTTAAG	1 cut(s)	342
MspI	CCGG	2 cut(s)	210, 285
MspR9I	CCNGG	2 cut(s)	210, 337
MvaI	CCWGG	1 cut(s)	337
MvnI	CGCG	1 cut(s)	52
MwoI	GCNNNNNNNGC	2 cut(s)	276, 285
NciI	CCSGG	1 cut(s)	210
NdeII	GATC	1 cut(s)	217
NlaIII	CATG	2 cut(s)	161, 335
NmuCI	GTSAC	1 cut(s)	258
NspI	RCATGY	1 cut(s)	335
PfeI	GAWTC	2 cut(s)	119, 154
PfoI	TCCNGGA	1 cut(s)	208
PkrI	GCNGC	3 cut(s)	54, 193, 278
PshAI	GACNNNNGTC	1 cut(s)	252
Psp124BI	GAGCTC	1 cut(s)	88
Psp6I	CCWGG	1 cut(s)	335
PspGI	CCWGG	1 cut(s)	335
PspPI	GGNCC	1 cut(s)	203
PstI	CTGCAG	1 cut(s)	193
RseI	CAYNNNNRTG	2 cut(s)	114, 330
SacI	GAGCTC	1 cut(s)	88
SaqAI	TTAA	3 cut(s)	180, 232, 343
SatI	GCNGC	3 cut(s)	53, 192, 277
Sau3AI	GATC	1 cut(s)	217
Sau96I	GGNCC	1 cut(s)	203
ScrFI	CCNGG	2 cut(s)	210, 337
SduI	GDGCHC	1 cut(s)	88
SetI	ASST	8 cut(s)	88, 199, 208, 231, 238, 252, 256, 295
SfaNI	GCATC	1 cut(s)	158
SfcI	CTRYAG	1 cut(s)	189
SinI	GGWCC	1 cut(s)	203
SmiMI	CAYNNNNRTG	2 cut(s)	114, 330
SmlI	CTYRAG	1 cut(s)	342
SmoI	CTYRAG	1 cut(s)	342
Sse9I	AATT	1 cut(s)	308
SsiI	CCGC	1 cut(s)	52
SspMI	CTAG	1 cut(s)	198
SstI	GAGCTC	1 cut(s)	88
StyD4I	CCNGG	2 cut(s)	208, 335
StyI	CCWWGG	1 cut(s)	265
TaiI	ACGT	3 cut(s)	238, 256, 295
TaqI	TCGA	3 cut(s)	29, 240, 328
TasI	AATT	1 cut(s)	308
TauI	GCSGC	1 cut(s)	55
TfiI	GAWTC	2 cut(s)	119, 154
Tru1I	TTAA	3 cut(s)	180, 232, 343
Tru9I	TTAA	3 cut(s)	180, 232, 343
TscAI	CASTG	2 cut(s)	121, 193
TseFI	GTSAC	1 cut(s)	258
TseI	GCWGC	2 cut(s)	191, 276
Tsp45I	GTSAC	1 cut(s)	258
TspGWI	ACGGA	1 cut(s)	246
TspRI	CASTG	2 cut(s)	121, 193
Vha464I	CTTAAG	1 cut(s)	342
VpaK11BI	GGWCC	1 cut(s)	203
XagI	CCTNNNNNAGG	1 cut(s)	210
XceI	RCATGY	1 cut(s)	335
XspI	CTAG	1 cut(s)	198

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.