Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr3

Orthogroup ID

OG0001449

Physical Location & Seq

Genomic Coordinates Forward (+)

1378980 .. 1379830

Gene Structure 851 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000010404

Sequence Viewer

CDS Protein Promoter (2k)

Length: 636 bp

ATGGCGGCGGTGCGCACCTACACCGCCATTAACACACTCCTCTCCTCCACATATAAATGCCCATATCCGCTGCTCCCAATCGTCCACGAACAAAATTCCAAAGCACTTCGAGTTCTCACAACCAAACAAGCAAAAGTTTCACCAACCAAGAAGAGGAGAATGGATTTCAGAATCATGGGTCTGGATGCTCCAATCATGACAGCGCTGCAGCAGCTACAGCAGCTGGCGGACTTCCCTGAGGAGAACGAGATGACCTCCAACGCCCCGACCCGGACCTACGTCCGCGACGCCAAGGCTATGGCTTCCACTCCGGCCGACGTGAAGGAGTACCCCAATTCCTACGTGTTCGTGATCGACATGCCGGGGCTCAAGTCAGGGGACATCAAGGTGCAGGTGGAGGATGACAATGTGCTTCTGATCAGCGGCGAGAGGAAGAGGGAGGACGAGAAAGAGGGGGTTAAGTATCTGAAGATGGAGAGAAGGGTTGGCAAGTTCATGAGGAAGTTTGTGCTGCCAGAGAATGCTAATGCTGATGCCATTTCTGCTGTTTGCCAAGATGGGGTTCTTACTGTGACTGTGGAGAAGGTGCCACCGCCTCAGCCGAAGACCAAGACTATTGAGGTCAAGATTGGTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006950 GO:0008150 GO:0009266 GO:0009408 GO:0009628 GO:0044424 GO:0044464 GO:0050896

KEGG Pathways

Metabolic & Signaling

ko04141 map04141

Pfam Domains

Protein Families

HSP20

Protein Analysis

212

Amino Acids

23.65

Weight (kDa)

9.21

Isoelectric Point (pI)

45.0

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
HSP20	PF00011	106 - 209	2.8e-29	Hsp20/alpha crystallin family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001449)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G12020 AT5G12030
fragaria_vesca	FvH4_2g31371
malus_domestica	MD00G1181700.v1.1 MD08G1068000.v1.1 MD08G1068200.v1.1 MD08G1068300.v1.1 MD08G1068500.v1.1 MD08G1068700.v1.1 MD08G1068800.v1.1 MD15G1053500.v1.1 MD15G1053600.v1.1 MD15G1053800.v1.1
prunus_persica	Prupe.1G407100_v2.0.a1 Prupe.1G407200_v2.0.a1 Prupe.1G407300_v2.0.a1
pyrus_communis	pycom08g05660 pycom08g05670
rosa_chinensis	RchiOBHm_Chr6g0311451 RchiOBHm_Chr6g0311461 RchiOBHm_Chr6g0311471
rosa_laevigata	RLG00000010403 RLG00000010404 RLG00000010405
rosa_multiflora	Rmu_co8421495.1_g000001 Rmu_sc0006915.1_g000010 Rmu_sc0006915.1_g000011 Rmu_sc0006915.1_g000012 Rmu_sc0013619.1_g000003 Rmu_sc0013619.1_g000004 Rmu_sc0013619.1_g000006 Rmu_sc0015790.1_g000003 Rmu_sc0015790.1_g000004
rosa_roxburghii	Rroxscaffold_7G00157590 Rroxscaffold_7G00157600
rosa_rugosa	Rorug06G0389100 Rorug06G0389100 Rorug06G0389200
rosa_samantha	Rh2AG205100 Rh2BG216900 Rh2DG211400 Rh6AG503500 Rh6AG503700 Rh6BG514200 Rh6BG514300 Rh6CG520000 Rh6CG520100 Rh6DG506100
rosa_wichuraiana	Rw2G016340 Rw6G043850 Rw6G043860 Rw6G043870

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	382
Acc16I	TGCGCA	1 cut(s)	14
Acc36I	ACCTGC	1 cut(s)	382
AccB1I	GGYRCC	1 cut(s)	586
AccII	CGCG	1 cut(s)	285
AciI	CCGC	8 cut(s)	5, 8, 24, 68, 227, 283, 423, 593
AcoI	YGGCCR	1 cut(s)	312
AcsI	RAATTY	1 cut(s)	94
AcuI	CTGAAG	1 cut(s)	488
AcyI	GRCGYC	1 cut(s)	288
AfaI	GTAC	1 cut(s)	329
AfeI	AGCGCT	1 cut(s)	204
AfiI	CCNNNNNNNGG	3 cut(s)	153, 270, 559
AflIII	ACRYGT	1 cut(s)	342
AjiI	CACGTC	1 cut(s)	319
AjuI	GAANNNNNNNTTGG	2 cut(s)	546, 578
AluBI	AGCT	2 cut(s)	214, 223
AluI	AGCT	2 cut(s)	214, 223
AlwNI	CAGNNNCTG	1 cut(s)	223
Aor51HI	AGCGCT	1 cut(s)	204
AoxI	GGCC	1 cut(s)	312
ApeKI	GCWGC	6 cut(s)	70, 205, 208, 211, 220, 511
ApoI	RAATTY	1 cut(s)	94
AspLEI	GCGC	2 cut(s)	15, 205
AspS9I	GGNCC	1 cut(s)	273
AsuC2I	CCSGG	2 cut(s)	271, 363
AsuHPI	GGTGA	1 cut(s)	132
AvaII	GGWCC	1 cut(s)	273
AxyI	CCTNAGG	1 cut(s)	237
BanI	GGYRCC	1 cut(s)	586
BanII	GRGCYC	1 cut(s)	369
BbsI	GAAGAC	1 cut(s)	611
BbvCI	CCTCAGC	1 cut(s)	597
BbvI	GCAGC	6 cut(s)	57, 192, 220, 223, 232, 498
BccI	CCATC	2 cut(s)	466, 551
BclI	TGATCA	1 cut(s)	417
BcnI	CCSGG	2 cut(s)	271, 363
BfmI	CTRYAG	2 cut(s)	206, 215
BfoI	RGCGCY	1 cut(s)	206
BfuAI	ACCTGC	1 cut(s)	382
BisI	GCNGC	8 cut(s)	6, 71, 206, 209, 212, 221, 424, 512
BlsI	GCNGC	8 cut(s)	7, 72, 207, 210, 213, 222, 425, 513
Bme1390I	CCNGG	2 cut(s)	271, 363
Bme18I	GGWCC	1 cut(s)	273
BmgBI	CACGTC	1 cut(s)	319
BmgT120I	GGNCC	1 cut(s)	273
BmiI	GGNNCC	1 cut(s)	588
BmrFI	CCNGG	2 cut(s)	271, 363
BmsI	GCATC	2 cut(s)	175, 523
BoxI	GACNNNNGTC	1 cut(s)	278
BpiI	GAAGAC	1 cut(s)	611
BplI	GAGNNNNNCTC	2 cut(s)	239, 271
Bpu10I	CCTNAGC	1 cut(s)	597
BpuEI	CTTGAG	1 cut(s)	353
BpuMI	CCSGG	2 cut(s)	271, 363
BsaAI	YACGTR	1 cut(s)	343
BsaHI	GRCGYC	1 cut(s)	288
BsaJI	CCNNGG	2 cut(s)	291, 362
Bsc4I	CCNNNNNNNGG	3 cut(s)	153, 270, 559
Bse21I	CCTNAGG	1 cut(s)	237
BseDI	CCNNGG	2 cut(s)	291, 362
BseGI	GGATG	2 cut(s)	190, 406
BseLI	CCNNNNNNNGG	3 cut(s)	153, 270, 559
BseMII	CTCAG	2 cut(s)	228, 611
BseRI	GAGGAG	4 cut(s)	29, 34, 169, 254
BseX3I	CGGCCG	1 cut(s)	312
BseXI	GCAGC	6 cut(s)	57, 192, 220, 223, 232, 498
BsgI	GTGCAG	1 cut(s)	410
Bsh1236I	CGCG	1 cut(s)	285
Bsh1285I	CGRYCG	1 cut(s)	315
BshFI	GGCC	1 cut(s)	314
BshNI	GGYRCC	1 cut(s)	586
BsiEI	CGRYCG	1 cut(s)	315
BsiSI	CCGG	3 cut(s)	271, 311, 362
BslFI	GGGAC	1 cut(s)	392
BslI	CCNNNNNNNGG	3 cut(s)	153, 270, 559
BsmFI	GGGAC	1 cut(s)	392
BsmI	GAATGC	1 cut(s)	526
BsnI	GGCC	1 cut(s)	314
Bsp1286I	GDGCHC	1 cut(s)	369
Bsp143I	GATC	2 cut(s)	351, 417
BspACI	CCGC	8 cut(s)	5, 8, 24, 68, 227, 283, 423, 593
BspANI	GGCC	1 cut(s)	314
BspCNI	CTCAG	2 cut(s)	229, 610
BspFNI	CGCG	1 cut(s)	285
BspHI	TCATGA	2 cut(s)	195, 495
BspLI	GGNNCC	1 cut(s)	588
BspMAI	CTGCAG	1 cut(s)	210
BspMI	ACCTGC	1 cut(s)	382
BspT107I	GGYRCC	1 cut(s)	586
BssECI	CCNNGG	2 cut(s)	291, 362
BssMI	GATC	2 cut(s)	351, 417
BssNI	GRCGYC	1 cut(s)	288
BssT1I	CCWWGG	1 cut(s)	291
Bst4CI	ACNGT	2 cut(s)	571, 577
Bst6I	CTCTTC	2 cut(s)	146, 428
BstACI	GRCGYC	1 cut(s)	288
BstBAI	YACGTR	1 cut(s)	343
BstC8I	GCNNGC	1 cut(s)	225
BstDEI	CTNAG	2 cut(s)	237, 597
BstF5I	GGATG	2 cut(s)	190, 406
BstFNI	CGCG	1 cut(s)	285
BstH2I	RGCGCY	1 cut(s)	206
BstHHI	GCGC	2 cut(s)	15, 205
BstKTI	GATC	2 cut(s)	354, 420
BstMBI	GATC	2 cut(s)	351, 417
BstMCI	CGRYCG	1 cut(s)	315
BstMWI	GCNNNNNNNGC	4 cut(s)	211, 217, 220, 542
BstNSI	RCATGY	1 cut(s)	361
BstPAI	GACNNNNGTC	1 cut(s)	278
BstSCI	CCNGG	2 cut(s)	269, 361
BstSFI	CTRYAG	2 cut(s)	206, 215
BstUI	CGCG	1 cut(s)	285
BstV1I	GCAGC	6 cut(s)	57, 192, 220, 223, 232, 498
BstV2I	GAAGAC	1 cut(s)	611
BstXI	CCANNNNNNTGG	1 cut(s)	298
BstZI	CGGCCG	1 cut(s)	312
Bsu36I	CCTNAGG	1 cut(s)	237
BsuRI	GGCC	1 cut(s)	314
BtrI	CACGTC	1 cut(s)	319
BtsCI	GGATG	2 cut(s)	190, 406
BveI	ACCTGC	1 cut(s)	382
Cac8I	GCNNGC	1 cut(s)	225
CaiI	CAGNNNCTG	1 cut(s)	223
CciI	TCATGA	2 cut(s)	195, 495
CfoI	GCGC	2 cut(s)	15, 205
Cfr13I	GGNCC	1 cut(s)	273
CseI	GACGC	1 cut(s)	296
Csp6I	GTAC	1 cut(s)	328
CviAII	CATG	4 cut(s)	175, 196, 358, 496
CviJI	RGCY	7 cut(s)	214, 223, 296, 302, 314, 367, 601
CviKI_1	RGCY	7 cut(s)	214, 223, 296, 302, 314, 367, 601
CviQI	GTAC	1 cut(s)	328
DdeI	CTNAG	2 cut(s)	237, 597
DpnI	GATC	2 cut(s)	353, 419
DpnII	GATC	2 cut(s)	351, 417
EaeI	YGGCCR	1 cut(s)	312
EagI	CGGCCG	1 cut(s)	312
Eam1104I	CTCTTC	2 cut(s)	146, 428
EarI	CTCTTC	2 cut(s)	146, 428
EciI	GGCGGA	1 cut(s)	242
EclXI	CGGCCG	1 cut(s)	312
Eco130I	CCWWGG	1 cut(s)	291
Eco24I	GRGCYC	1 cut(s)	369
Eco47I	GGWCC	1 cut(s)	273
Eco47III	AGCGCT	1 cut(s)	204
Eco52I	CGGCCG	1 cut(s)	312
Eco57I	CTGAAG	1 cut(s)	488
Eco81I	CCTNAGG	1 cut(s)	237
EcoT14I	CCWWGG	1 cut(s)	291
EcoT38I	GRGCYC	1 cut(s)	369
ErhI	CCWWGG	1 cut(s)	291
FaeI	CATG	4 cut(s)	178, 199, 361, 499
FaiI	YATR	8 cut(s)	52, 54, 64, 176, 197, 299, 359, 497
FaqI	GGGAC	1 cut(s)	392
FatI	CATG	4 cut(s)	174, 195, 357, 495
FbaI	TGATCA	1 cut(s)	417
Fnu4HI	GCNGC	8 cut(s)	6, 71, 206, 209, 212, 221, 424, 512
FokI	GGATG	2 cut(s)	197, 413
FriOI	GRGCYC	1 cut(s)	369
Fsp4HI	GCNGC	8 cut(s)	6, 71, 206, 209, 212, 221, 424, 512
FspAI	RTGCGCAY	1 cut(s)	14
FspI	TGCGCA	1 cut(s)	14
GlaI	GCGC	2 cut(s)	14, 204
GluI	GCNGC	8 cut(s)	6, 71, 206, 209, 212, 221, 424, 512
HaeII	RGCGCY	1 cut(s)	206
HaeIII	GGCC	1 cut(s)	314
HapII	CCGG	3 cut(s)	271, 311, 362
HgaI	GACGC	1 cut(s)	296
HhaI	GCGC	2 cut(s)	15, 205
Hin1I	GRCGYC	1 cut(s)	288
Hin1II	CATG	4 cut(s)	178, 199, 361, 499
Hin6I	GCGC	2 cut(s)	13, 203
HinP1I	GCGC	2 cut(s)	13, 203
HinfI	GANTC	1 cut(s)	171
HpaII	CCGG	3 cut(s)	271, 311, 362
HphI	GGTGA	1 cut(s)	132
Hpy166II	GTNNAC	1 cut(s)	85
Hpy188I	TCNGA	3 cut(s)	170, 417, 468
Hpy188III	TCNNGA	5 cut(s)	182, 196, 349, 496, 625
Hpy8I	GTNNAC	1 cut(s)	85
Hpy99I	CGWCG	2 cut(s)	290, 320
HpyAV	CCTTC	3 cut(s)	316, 474, 577
HpyCH4III	ACNGT	2 cut(s)	571, 577
HpyCH4IV	ACGT	3 cut(s)	279, 318, 342
HpyCH4V	TGCA	2 cut(s)	208, 391
HpyF10VI	GCNNNNNNNGC	4 cut(s)	211, 217, 220, 542
HpyF3I	CTNAG	2 cut(s)	237, 597
HpySE526I	ACGT	3 cut(s)	279, 318, 342
Hsp92I	GRCGYC	1 cut(s)	288
Hsp92II	CATG	4 cut(s)	178, 199, 361, 499
HspAI	GCGC	2 cut(s)	13, 203
Ksp22I	TGATCA	1 cut(s)	417
Kzo9I	GATC	2 cut(s)	351, 417
LmnI	GCTCC	2 cut(s)	78, 193
LpnPI	CCDG	9 cut(s)	167, 209, 249, 284, 324, 360, 375, 377, 528
Lsp1109I	GCAGC	6 cut(s)	57, 192, 220, 223, 232, 498
LweI	GCATC	2 cut(s)	175, 523
MaeII	ACGT	3 cut(s)	279, 318, 342
MaeIII	GTNAC	1 cut(s)	571
MalI	GATC	2 cut(s)	353, 419
MboI	GATC	2 cut(s)	351, 417
MboII	GAAGA	4 cut(s)	163, 445, 481, 616
MhlI	GDGCHC	1 cut(s)	369
MluCI	AATT	2 cut(s)	94, 334
MmeI	TCCRAC	1 cut(s)	282
MseI	TTAA	2 cut(s)	30, 459
MslI	CAYNNNNRTG	2 cut(s)	55, 386
MspA1I	CMGCKG	3 cut(s)	70, 223, 423
MspI	CCGG	3 cut(s)	271, 311, 362
MspR9I	CCNGG	2 cut(s)	271, 363
Mva1269I	GAATGC	1 cut(s)	526
MvnI	CGCG	1 cut(s)	285
MwoI	GCNNNNNNNGC	4 cut(s)	211, 217, 220, 542
NciI	CCSGG	2 cut(s)	271, 363
NdeII	GATC	2 cut(s)	351, 417
NlaIII	CATG	4 cut(s)	178, 199, 361, 499
NlaIV	GGNNCC	1 cut(s)	588
NmuCI	GTSAC	1 cut(s)	571
NsbI	TGCGCA	1 cut(s)	14
NspI	RCATGY	1 cut(s)	361
PagI	TCATGA	2 cut(s)	195, 495
PaqCI	CACCTGC	1 cut(s)	382
PctI	GAATGC	1 cut(s)	526
PfeI	GAWTC	1 cut(s)	171
PkrI	GCNGC	8 cut(s)	7, 72, 207, 210, 213, 222, 425, 513
Ppu21I	YACGTR	1 cut(s)	343
PshAI	GACNNNNGTC	1 cut(s)	278
PspN4I	GGNNCC	1 cut(s)	588
PspPI	GGNCC	1 cut(s)	273
PstI	CTGCAG	1 cut(s)	210
PstNI	CAGNNNCTG	1 cut(s)	223
PvuII	CAGCTG	1 cut(s)	223
RsaI	GTAC	1 cut(s)	329
RsaNI	GTAC	1 cut(s)	328
RseI	CAYNNNNRTG	2 cut(s)	55, 386
SaqAI	TTAA	2 cut(s)	30, 459
SatI	GCNGC	8 cut(s)	6, 71, 206, 209, 212, 221, 424, 512
Sau3AI	GATC	2 cut(s)	351, 417
Sau96I	GGNCC	1 cut(s)	273
ScrFI	CCNGG	2 cut(s)	271, 363
SduI	GDGCHC	1 cut(s)	369
SfaNI	GCATC	2 cut(s)	175, 523
SfcI	CTRYAG	2 cut(s)	206, 215
SinI	GGWCC	1 cut(s)	273
SmiMI	CAYNNNNRTG	2 cut(s)	55, 386
SmlI	CTYRAG	1 cut(s)	368
SmoI	CTYRAG	1 cut(s)	368
Sse9I	AATT	2 cut(s)	94, 334
SsiI	CCGC	8 cut(s)	5, 8, 24, 68, 227, 283, 423, 593
StyD4I	CCNGG	2 cut(s)	269, 361
StyI	CCWWGG	1 cut(s)	291
TaaI	ACNGT	2 cut(s)	571, 577
TaiI	ACGT	3 cut(s)	282, 321, 345
TaqI	TCGA	2 cut(s)	109, 354
TasI	AATT	2 cut(s)	94, 334
TauI	GCSGC	2 cut(s)	8, 426
TfiI	GAWTC	1 cut(s)	171
Tru1I	TTAA	2 cut(s)	30, 459
Tru9I	TTAA	2 cut(s)	30, 459
TseFI	GTSAC	1 cut(s)	571
TseI	GCWGC	6 cut(s)	70, 205, 208, 211, 220, 511
Tsp45I	GTSAC	1 cut(s)	571
TspDTI	ATGAA	1 cut(s)	484
VpaK11BI	GGWCC	1 cut(s)	273
XapI	RAATTY	1 cut(s)	94
XceI	RCATGY	1 cut(s)	361

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.