Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0006915.1

Orthogroup ID

OG0001449

Physical Location & Seq

Genomic Coordinates Reverse (-)

37175 .. 37780

Gene Structure 606 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0006915.1_g000012.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 606 bp

atgattcccctgaggaacatgggtgtcgacagcaacctcctggatgccctccacgaccttttggacttctctgacgagcaaaaccaggcgagccaccatgcgccttcgcgccaatatgtccgggaagccaaggccatgtcggctactccagctgacgtgaaggagactcagaatgcctacatctttgtgatagatgtgcccgggctgaagtcggaccagatcaaagtccatctggaagacgacaacgttttggtggtgtgcggcgagaggaagagggagaaggagagagacaagggagtgaggtacctgaggatggagaggaggctcggcaagtatctcaagaagtttgtgctgccggagaatgctgatgtagagaagatcagtgccgagtgtcaggatggggtgttgactattgtggtggagaagaagccgccgccggagctgaagaagcccaagattgttcaggtgaggattggcgacagccaagaaggccaagagggtcaaggtggccaagagggtcaaagtggaggtcaaggagaccagtggggtcaaaagggccaaggaggtcaagagggtcagggtggccaagatggcaacagccgctag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04141 map04141

Pfam Domains

Protein Families

HSP20

Protein Analysis

201

Amino Acids

22.26

Weight (kDa)

5.67

Isoelectric Point (pI)

35.76

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001449)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G12020 AT5G12030
fragaria_vesca	FvH4_2g31371
malus_domestica	MD00G1181700.v1.1 MD08G1068000.v1.1 MD08G1068200.v1.1 MD08G1068300.v1.1 MD08G1068500.v1.1 MD08G1068700.v1.1 MD08G1068800.v1.1 MD15G1053500.v1.1 MD15G1053600.v1.1 MD15G1053800.v1.1
prunus_persica	Prupe.1G407100_v2.0.a1 Prupe.1G407200_v2.0.a1 Prupe.1G407300_v2.0.a1
pyrus_communis	pycom08g05660 pycom08g05670
rosa_chinensis	RchiOBHm_Chr6g0311451 RchiOBHm_Chr6g0311461 RchiOBHm_Chr6g0311471
rosa_laevigata	RLG00000010403 RLG00000010404 RLG00000010405
rosa_multiflora	Rmu_co8421495.1_g000001 Rmu_sc0006915.1_g000010 Rmu_sc0006915.1_g000011 Rmu_sc0006915.1_g000012 Rmu_sc0013619.1_g000003 Rmu_sc0013619.1_g000004 Rmu_sc0013619.1_g000006 Rmu_sc0015790.1_g000003 Rmu_sc0015790.1_g000004
rosa_roxburghii	Rroxscaffold_7G00157590 Rroxscaffold_7G00157600
rosa_rugosa	Rorug06G0389100 Rorug06G0389100 Rorug06G0389200
rosa_samantha	Rh2AG205100 Rh2BG216900 Rh2DG211400 Rh6AG503500 Rh6AG503700 Rh6BG514200 Rh6BG514300 Rh6CG520000 Rh6CG520100 Rh6DG506100
rosa_wichuraiana	Rw2G016340 Rw6G043850 Rw6G043860 Rw6G043870

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	303
AccB1I	GGYRCC	1 cut(s)	303
AccI	GTMKAC	1 cut(s)	27
AccII	CGCG	1 cut(s)	109
AciI	CCGC	4 cut(s)	261, 431, 434, 601
AclI	AACGTT	1 cut(s)	246
AcoI	YGGCCR	2 cut(s)	508, 583
AcuI	CTGAAG	2 cut(s)	227, 464
AfaI	GTAC	1 cut(s)	305
AfiI	CCNNNNNNNGG	1 cut(s)	313
AjiI	CACGTC	1 cut(s)	157
AjnI	CCWGG	2 cut(s)	39, 84
AluBI	AGCT	2 cut(s)	152, 442
AluI	AGCT	2 cut(s)	152, 442
Alw26I	GTCTC	3 cut(s)	158, 282, 531
Ama87I	CYCGRG	1 cut(s)	200
AoxI	GGCC	5 cut(s)	132, 490, 508, 556, 583
ApeKI	GCWGC	1 cut(s)	352
ArsI	GACNNNNNNTTYG	2 cut(s)	514, 546
Asp718I	GGTACC	1 cut(s)	303
AspLEI	GCGC	2 cut(s)	103, 111
AspS9I	GGNCC	2 cut(s)	214, 556
AsuC2I	CCSGG	3 cut(s)	122, 201, 202
AsuHPI	GGTGA	1 cut(s)	478
AvaI	CYCGRG	1 cut(s)	200
AvaII	GGWCC	1 cut(s)	214
AxyI	CCTNAGG	2 cut(s)	11, 308
BaeGI	GKGCMC	1 cut(s)	201
BalI	TGGCCA	2 cut(s)	510, 585
BanI	GGYRCC	1 cut(s)	303
BbsI	GAAGAC	1 cut(s)	243
BbvI	GCAGC	1 cut(s)	339
BccI	CCATC	4 cut(s)	237, 307, 392, 584
BciT130I	CCWGG	2 cut(s)	41, 86
BcnI	CCSGG	3 cut(s)	122, 201, 202
BcoDI	GTCTC	3 cut(s)	158, 282, 531
BfaI	CTAG	1 cut(s)	604
BglI	GCCNNNNNGGC	3 cut(s)	140, 489, 591
BisI	GCNGC	5 cut(s)	262, 353, 431, 434, 601
BlsI	GCNGC	5 cut(s)	263, 354, 432, 435, 602
Bme1390I	CCNGG	5 cut(s)	41, 86, 122, 201, 202
Bme18I	GGWCC	1 cut(s)	214
BmeT110I	CYCGRG	1 cut(s)	200
BmgBI	CACGTC	1 cut(s)	157
BmgT120I	GGNCC	2 cut(s)	214, 556
BmiI	GGNNCC	1 cut(s)	305
BmrFI	CCNGG	5 cut(s)	41, 86, 122, 201, 202
BmsI	GCATC	1 cut(s)	34
BpiI	GAAGAC	1 cut(s)	243
BpmI	CTGGAG	1 cut(s)	132
BpuEI	CTTGAG	1 cut(s)	323
BpuMI	CCSGG	3 cut(s)	122, 201, 202
BsaI	GGTCTC	1 cut(s)	531
BsaJI	CCNNGG	3 cut(s)	129, 200, 559
Bsc4I	CCNNNNNNNGG	1 cut(s)	313
Bse1I	ACTGG	1 cut(s)	541
Bse21I	CCTNAGG	2 cut(s)	11, 308
BseBI	CCWGG	2 cut(s)	41, 86
BseDI	CCNNGG	3 cut(s)	129, 200, 559
BseGI	GGATG	3 cut(s)	49, 318, 403
BseLI	CCNNNNNNNGG	1 cut(s)	313
BseMII	CTCAG	2 cut(s)	182, 299
BseNI	ACTGG	1 cut(s)	541
BseRI	GAGGAG	1 cut(s)	334
BseSI	GKGCMC	1 cut(s)	201
BseXI	GCAGC	1 cut(s)	339
Bsh1236I	CGCG	1 cut(s)	109
BshFI	GGCC	5 cut(s)	134, 492, 510, 558, 585
BshNI	GGYRCC	1 cut(s)	303
BsiHKCI	CYCGRG	1 cut(s)	200
BsiSI	CCGG	4 cut(s)	121, 201, 356, 437
BslI	CCNNNNNNNGG	1 cut(s)	313
BsmAI	GTCTC	3 cut(s)	158, 282, 531
BsmI	GAATGC	2 cut(s)	178, 367
BsnI	GGCC	5 cut(s)	134, 492, 510, 558, 585
Bso31I	GGTCTC	1 cut(s)	531
BsoBI	CYCGRG	1 cut(s)	200
Bsp1286I	GDGCHC	1 cut(s)	201
Bsp143I	GATC	2 cut(s)	219, 378
BspACI	CCGC	4 cut(s)	261, 431, 434, 601
BspANI	GGCC	5 cut(s)	134, 492, 510, 558, 585
BspCNI	CTCAG	2 cut(s)	181, 300
BspFNI	CGCG	1 cut(s)	109
BspLI	GGNNCC	1 cut(s)	305
BspT107I	GGYRCC	1 cut(s)	303
BspTNI	GGTCTC	1 cut(s)	531
BsrI	ACTGG	1 cut(s)	541
BssECI	CCNNGG	3 cut(s)	129, 200, 559
BssMI	GATC	2 cut(s)	219, 378
BssT1I	CCWWGG	2 cut(s)	129, 559
Bst2UI	CCWGG	2 cut(s)	41, 86
Bst6I	CTCTTC	1 cut(s)	266
BstC8I	GCNNGC	1 cut(s)	91
BstDEI	CTNAG	3 cut(s)	11, 168, 308
BstF5I	GGATG	3 cut(s)	49, 318, 403
BstFNI	CGCG	1 cut(s)	109
BstHHI	GCGC	2 cut(s)	103, 111
BstKTI	GATC	2 cut(s)	222, 381
BstMAI	GTCTC	3 cut(s)	158, 282, 531
BstMBI	GATC	2 cut(s)	219, 378
BstMWI	GCNNNNNNNGC	7 cut(s)	140, 149, 439, 448, 489, 591, 600
BstNI	CCWGG	2 cut(s)	41, 86
BstSCI	CCNGG	5 cut(s)	39, 84, 120, 199, 200
BstSLI	GKGCMC	1 cut(s)	201
BstUI	CGCG	1 cut(s)	109
BstV1I	GCAGC	1 cut(s)	339
BstV2I	GAAGAC	1 cut(s)	243
Bsu36I	CCTNAGG	2 cut(s)	11, 308
BsuRI	GGCC	5 cut(s)	134, 492, 510, 558, 585
BtrI	CACGTC	1 cut(s)	157
BtsCI	GGATG	3 cut(s)	49, 318, 403
BtsIMutI	CAGTG	2 cut(s)	388, 548
Cac8I	GCNNGC	1 cut(s)	91
CfoI	GCGC	2 cut(s)	103, 111
Cfr13I	GGNCC	2 cut(s)	214, 556
Cfr9I	CCCGGG	1 cut(s)	200
Csp6I	GTAC	1 cut(s)	304
CviAII	CATG	3 cut(s)	19, 98, 136
CviQI	GTAC	1 cut(s)	304
DdeI	CTNAG	3 cut(s)	11, 168, 308
DpnI	GATC	2 cut(s)	221, 380
DpnII	GATC	2 cut(s)	219, 378
EaeI	YGGCCR	2 cut(s)	508, 583
Eam1104I	CTCTTC	1 cut(s)	266
EarI	CTCTTC	1 cut(s)	266
Eco130I	CCWWGG	2 cut(s)	129, 559
Eco31I	GGTCTC	1 cut(s)	531
Eco47I	GGWCC	1 cut(s)	214
Eco57I	CTGAAG	2 cut(s)	227, 464
Eco81I	CCTNAGG	2 cut(s)	11, 308
Eco88I	CYCGRG	1 cut(s)	200
EcoRII	CCWGG	2 cut(s)	39, 84
EcoT14I	CCWWGG	2 cut(s)	129, 559
ErhI	CCWWGG	2 cut(s)	129, 559
FaeI	CATG	3 cut(s)	22, 101, 139
FaiI	YATR	4 cut(s)	20, 99, 117, 137
FatI	CATG	3 cut(s)	18, 97, 135
FblI	GTMKAC	1 cut(s)	27
Fnu4HI	GCNGC	5 cut(s)	262, 353, 431, 434, 601
FokI	GGATG	3 cut(s)	56, 325, 410
Fsp4HI	GCNGC	5 cut(s)	262, 353, 431, 434, 601
FspBI	CTAG	1 cut(s)	604
GlaI	GCGC	2 cut(s)	102, 110
GluI	GCNGC	5 cut(s)	262, 353, 431, 434, 601
GsuI	CTGGAG	1 cut(s)	132
HaeIII	GGCC	5 cut(s)	134, 492, 510, 558, 585
HapII	CCGG	4 cut(s)	121, 201, 356, 437
HhaI	GCGC	2 cut(s)	103, 111
Hin1II	CATG	3 cut(s)	22, 101, 139
Hin6I	GCGC	2 cut(s)	101, 109
HinP1I	GCGC	2 cut(s)	101, 109
HincII	GTYRAC	2 cut(s)	28, 408
HindII	GTYRAC	2 cut(s)	28, 408
HinfI	GANTC	2 cut(s)	4, 166
HpaII	CCGG	4 cut(s)	121, 201, 356, 437
HphI	GGTGA	1 cut(s)	478
Hpy166II	GTNNAC	2 cut(s)	28, 408
Hpy188I	TCNGA	3 cut(s)	73, 171, 214
Hpy188III	TCNNGA	4 cut(s)	233, 340, 395, 569
Hpy8I	GTNNAC	2 cut(s)	28, 408
HpyAV	CCTTC	4 cut(s)	114, 154, 274, 482
HpyCH4IV	ACGT	2 cut(s)	156, 246
HpyF10VI	GCNNNNNNNGC	7 cut(s)	140, 149, 439, 448, 489, 591, 600
HpyF3I	CTNAG	3 cut(s)	11, 168, 308
HpySE526I	ACGT	2 cut(s)	156, 246
Hsp92II	CATG	3 cut(s)	22, 101, 139
HspAI	GCGC	2 cut(s)	101, 109
KpnI	GGTACC	1 cut(s)	307
Kzo9I	GATC	2 cut(s)	219, 378
LmnI	GCTCC	1 cut(s)	439
Lsp1109I	GCAGC	1 cut(s)	339
LweI	GCATC	1 cut(s)	34
MaeI	CTAG	1 cut(s)	604
MaeII	ACGT	2 cut(s)	156, 246
MalI	GATC	2 cut(s)	221, 380
MboI	GATC	2 cut(s)	219, 378
MboII	GAAGA	5 cut(s)	248, 283, 388, 436, 457
MhlI	GDGCHC	1 cut(s)	201
MlsI	TGGCCA	2 cut(s)	510, 585
MluNI	TGGCCA	2 cut(s)	510, 585
MlyI	GAGTC	1 cut(s)	160
MmeI	TCCRAC	1 cut(s)	192
Mox20I	TGGCCA	2 cut(s)	510, 585
MscI	TGGCCA	2 cut(s)	510, 585
MslI	CAYNNNNRTG	1 cut(s)	185
Msp20I	TGGCCA	2 cut(s)	510, 585
MspA1I	CMGCKG	1 cut(s)	152
MspI	CCGG	4 cut(s)	121, 201, 356, 437
MspR9I	CCNGG	5 cut(s)	41, 86, 122, 201, 202
Mva1269I	GAATGC	2 cut(s)	178, 367
MvaI	CCWGG	2 cut(s)	41, 86
MvnI	CGCG	1 cut(s)	109
MwoI	GCNNNNNNNGC	7 cut(s)	140, 149, 439, 448, 489, 591, 600
NciI	CCSGG	3 cut(s)	122, 201, 202
NdeII	GATC	2 cut(s)	219, 378
NlaIII	CATG	3 cut(s)	22, 101, 139
NlaIV	GGNNCC	1 cut(s)	305
NmeAIII	GCCGAG	2 cut(s)	306, 412
PctI	GAATGC	2 cut(s)	178, 367
PfeI	GAWTC	1 cut(s)	4
PfoI	TCCNGGA	2 cut(s)	39, 120
PkrI	GCNGC	5 cut(s)	263, 354, 432, 435, 602
PleI	GAGTC	1 cut(s)	160
PpsI	GAGTC	1 cut(s)	160
Psp1406I	AACGTT	1 cut(s)	246
Psp6I	CCWGG	2 cut(s)	39, 84
PspGI	CCWGG	2 cut(s)	39, 84
PspN4I	GGNNCC	1 cut(s)	305
PspPI	GGNCC	2 cut(s)	214, 556
PvuII	CAGCTG	1 cut(s)	152
RsaI	GTAC	1 cut(s)	305
RsaNI	GTAC	1 cut(s)	304
RseI	CAYNNNNRTG	1 cut(s)	185
SalI	GTCGAC	1 cut(s)	26
SatI	GCNGC	5 cut(s)	262, 353, 431, 434, 601
Sau3AI	GATC	2 cut(s)	219, 378
Sau96I	GGNCC	2 cut(s)	214, 556
SchI	GAGTC	1 cut(s)	160
ScrFI	CCNGG	5 cut(s)	41, 86, 122, 201, 202
SduI	GDGCHC	1 cut(s)	201
SfaNI	GCATC	1 cut(s)	34
SinI	GGWCC	1 cut(s)	214
SmaI	CCCGGG	1 cut(s)	202
SmiMI	CAYNNNNRTG	1 cut(s)	185
SmlI	CTYRAG	1 cut(s)	338
SmoI	CTYRAG	1 cut(s)	338
SrfI	GCCCGGGC	1 cut(s)	202
SsiI	CCGC	4 cut(s)	261, 431, 434, 601
SspMI	CTAG	1 cut(s)	604
StyD4I	CCNGG	5 cut(s)	39, 84, 120, 199, 200
StyI	CCWWGG	2 cut(s)	129, 559
TaiI	ACGT	2 cut(s)	159, 249
TaqI	TCGA	1 cut(s)	27
TauI	GCSGC	4 cut(s)	264, 433, 436, 603
TfiI	GAWTC	1 cut(s)	4
TscAI	CASTG	2 cut(s)	388, 548
TseI	GCWGC	1 cut(s)	352
TspMI	CCCGGG	1 cut(s)	200
TspRI	CASTG	2 cut(s)	388, 548
VpaK11BI	GGWCC	1 cut(s)	214
XmaI	CCCGGG	1 cut(s)	200
XmiI	GTMKAC	1 cut(s)	27
XspI	CTAG	1 cut(s)	604

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.