Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0013619.1

Orthogroup ID

OG0001449

Physical Location & Seq

Genomic Coordinates Reverse (-)

6858 .. 7319

Gene Structure 462 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0013619.1_g000004.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 462 bp

atgggtctggatgctccaatcatgacagcactgcagcagctacagcagctggcggacttccctgaggagaacgagaagacctccaacgccccgacccggacctacgtccgcgacgccaaggctatggcttccactccggccgacgtgaaggagtaccccaattcctacgtgttcgtgatcgacatgccggggctcaagtcaggcgacatcaaggtgcaggtggaggatgacaatgtgcttctgatcagcggcgagaggaagagggaggacgagaaagagggggtaaagtatttgaggatggaaaggagggttggcaagtttatgaggaagtttgtgctgcctgagaatgctaatgctgatgccatttctgctgtttgccaagatggggttcttactgtgactgtggagaaggtgccaccgcctcagccgaagaccaagactattgaggtcaagattggttag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006950 GO:0008150 GO:0009266 GO:0009408 GO:0009628 GO:0044424 GO:0044464 GO:0050896

KEGG Pathways

Metabolic & Signaling

ko04141 map04141

Pfam Domains

Protein Families

HSP20

Protein Analysis

153

Amino Acids

17.04

Weight (kDa)

5.34

Isoelectric Point (pI)

42.65

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001449)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G12020 AT5G12030
fragaria_vesca	FvH4_2g31371
malus_domestica	MD00G1181700.v1.1 MD08G1068000.v1.1 MD08G1068200.v1.1 MD08G1068300.v1.1 MD08G1068500.v1.1 MD08G1068700.v1.1 MD08G1068800.v1.1 MD15G1053500.v1.1 MD15G1053600.v1.1 MD15G1053800.v1.1
prunus_persica	Prupe.1G407100_v2.0.a1 Prupe.1G407200_v2.0.a1 Prupe.1G407300_v2.0.a1
pyrus_communis	pycom08g05660 pycom08g05670
rosa_chinensis	RchiOBHm_Chr6g0311451 RchiOBHm_Chr6g0311461 RchiOBHm_Chr6g0311471
rosa_laevigata	RLG00000010403 RLG00000010404 RLG00000010405
rosa_multiflora	Rmu_co8421495.1_g000001 Rmu_sc0006915.1_g000010 Rmu_sc0006915.1_g000011 Rmu_sc0006915.1_g000012 Rmu_sc0013619.1_g000003 Rmu_sc0013619.1_g000004 Rmu_sc0013619.1_g000006 Rmu_sc0015790.1_g000003 Rmu_sc0015790.1_g000004
rosa_roxburghii	Rroxscaffold_7G00157590 Rroxscaffold_7G00157600
rosa_rugosa	Rorug06G0389100 Rorug06G0389100 Rorug06G0389200
rosa_samantha	Rh2AG205100 Rh2BG216900 Rh2DG211400 Rh6AG503500 Rh6AG503700 Rh6BG514200 Rh6BG514300 Rh6CG520000 Rh6CG520100 Rh6DG506100
rosa_wichuraiana	Rw2G016340 Rw6G043850 Rw6G043860 Rw6G043870

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	208
Acc36I	ACCTGC	1 cut(s)	208
AccB1I	GGYRCC	1 cut(s)	412
AccII	CGCG	1 cut(s)	111
AciI	CCGC	4 cut(s)	53, 109, 249, 419
AcoI	YGGCCR	1 cut(s)	138
AcyI	GRCGYC	1 cut(s)	114
AfaI	GTAC	1 cut(s)	155
AfiI	CCNNNNNNNGG	2 cut(s)	96, 385
AflIII	ACRYGT	1 cut(s)	168
AjiI	CACGTC	1 cut(s)	145
AjuI	GAANNNNNNNTTGG	4 cut(s)	294, 326, 372, 404
AluBI	AGCT	2 cut(s)	40, 49
AluI	AGCT	2 cut(s)	40, 49
AlwNI	CAGNNNCTG	1 cut(s)	49
AoxI	GGCC	1 cut(s)	138
ApeKI	GCWGC	4 cut(s)	34, 37, 46, 337
AspS9I	GGNCC	1 cut(s)	99
AsuC2I	CCSGG	2 cut(s)	97, 189
AvaII	GGWCC	1 cut(s)	99
AxyI	CCTNAGG	1 cut(s)	63
BanI	GGYRCC	1 cut(s)	412
BanII	GRGCYC	1 cut(s)	195
BbsI	GAAGAC	2 cut(s)	83, 437
BbvCI	CCTCAGC	1 cut(s)	423
BbvI	GCAGC	4 cut(s)	46, 49, 58, 324
BccI	CCATC	2 cut(s)	292, 377
BclI	TGATCA	1 cut(s)	243
BcnI	CCSGG	2 cut(s)	97, 189
BfmI	CTRYAG	2 cut(s)	32, 41
BfuAI	ACCTGC	1 cut(s)	208
BisI	GCNGC	5 cut(s)	35, 38, 47, 250, 338
BlsI	GCNGC	5 cut(s)	36, 39, 48, 251, 339
Bme1390I	CCNGG	2 cut(s)	97, 189
Bme18I	GGWCC	1 cut(s)	99
BmgBI	CACGTC	1 cut(s)	145
BmgT120I	GGNCC	1 cut(s)	99
BmiI	GGNNCC	1 cut(s)	414
BmrFI	CCNGG	2 cut(s)	97, 189
BmsI	GCATC	1 cut(s)	349
BoxI	GACNNNNGTC	1 cut(s)	104
BpiI	GAAGAC	2 cut(s)	83, 437
BplI	GAGNNNNNCTC	2 cut(s)	65, 97
Bpu10I	CCTNAGC	1 cut(s)	423
BpuEI	CTTGAG	1 cut(s)	179
BpuMI	CCSGG	2 cut(s)	97, 189
BsaAI	YACGTR	1 cut(s)	169
BsaHI	GRCGYC	1 cut(s)	114
BsaJI	CCNNGG	2 cut(s)	117, 188
Bsc4I	CCNNNNNNNGG	2 cut(s)	96, 385
Bse21I	CCTNAGG	1 cut(s)	63
BseDI	CCNNGG	2 cut(s)	117, 188
BseGI	GGATG	3 cut(s)	16, 232, 303
BseLI	CCNNNNNNNGG	2 cut(s)	96, 385
BseMII	CTCAG	3 cut(s)	54, 333, 437
BseRI	GAGGAG	1 cut(s)	80
BseX3I	CGGCCG	1 cut(s)	138
BseXI	GCAGC	4 cut(s)	46, 49, 58, 324
BsgI	GTGCAG	1 cut(s)	236
Bsh1236I	CGCG	1 cut(s)	111
Bsh1285I	CGRYCG	1 cut(s)	141
BshFI	GGCC	1 cut(s)	140
BshNI	GGYRCC	1 cut(s)	412
BsiEI	CGRYCG	1 cut(s)	141
BsiSI	CCGG	3 cut(s)	97, 137, 188
BslI	CCNNNNNNNGG	2 cut(s)	96, 385
BsmI	GAATGC	1 cut(s)	352
BsnI	GGCC	1 cut(s)	140
Bsp1286I	GDGCHC	1 cut(s)	195
Bsp143I	GATC	2 cut(s)	177, 243
BspACI	CCGC	4 cut(s)	53, 109, 249, 419
BspANI	GGCC	1 cut(s)	140
BspCNI	CTCAG	3 cut(s)	55, 334, 436
BspFNI	CGCG	1 cut(s)	111
BspHI	TCATGA	1 cut(s)	21
BspLI	GGNNCC	1 cut(s)	414
BspMAI	CTGCAG	1 cut(s)	36
BspMI	ACCTGC	1 cut(s)	208
BspT107I	GGYRCC	1 cut(s)	412
BssECI	CCNNGG	2 cut(s)	117, 188
BssMI	GATC	2 cut(s)	177, 243
BssNI	GRCGYC	1 cut(s)	114
BssT1I	CCWWGG	1 cut(s)	117
Bst4CI	ACNGT	2 cut(s)	397, 403
Bst6I	CTCTTC	1 cut(s)	254
BstACI	GRCGYC	1 cut(s)	114
BstBAI	YACGTR	1 cut(s)	169
BstC8I	GCNNGC	1 cut(s)	51
BstDEI	CTNAG	3 cut(s)	63, 342, 423
BstF5I	GGATG	3 cut(s)	16, 232, 303
BstFNI	CGCG	1 cut(s)	111
BstKTI	GATC	2 cut(s)	180, 246
BstMBI	GATC	2 cut(s)	177, 243
BstMCI	CGRYCG	1 cut(s)	141
BstMWI	GCNNNNNNNGC	3 cut(s)	43, 46, 368
BstNSI	RCATGY	1 cut(s)	187
BstPAI	GACNNNNGTC	1 cut(s)	104
BstSCI	CCNGG	2 cut(s)	95, 187
BstSFI	CTRYAG	2 cut(s)	32, 41
BstUI	CGCG	1 cut(s)	111
BstV1I	GCAGC	4 cut(s)	46, 49, 58, 324
BstV2I	GAAGAC	2 cut(s)	83, 437
BstXI	CCANNNNNNTGG	1 cut(s)	124
BstZI	CGGCCG	1 cut(s)	138
Bsu36I	CCTNAGG	1 cut(s)	63
BsuRI	GGCC	1 cut(s)	140
BtrI	CACGTC	1 cut(s)	145
BtsCI	GGATG	3 cut(s)	16, 232, 303
BtsI	GCAGTG	1 cut(s)	29
BtsIMutI	CAGTG	1 cut(s)	29
BveI	ACCTGC	1 cut(s)	208
Cac8I	GCNNGC	1 cut(s)	51
CaiI	CAGNNNCTG	1 cut(s)	49
CciI	TCATGA	1 cut(s)	21
Cfr13I	GGNCC	1 cut(s)	99
CseI	GACGC	1 cut(s)	122
Csp6I	GTAC	1 cut(s)	154
CviAII	CATG	2 cut(s)	22, 184
CviJI	RGCY	7 cut(s)	40, 49, 122, 128, 140, 193, 427
CviKI_1	RGCY	7 cut(s)	40, 49, 122, 128, 140, 193, 427
CviQI	GTAC	1 cut(s)	154
DdeI	CTNAG	3 cut(s)	63, 342, 423
DpnI	GATC	2 cut(s)	179, 245
DpnII	GATC	2 cut(s)	177, 243
EaeI	YGGCCR	1 cut(s)	138
EagI	CGGCCG	1 cut(s)	138
Eam1104I	CTCTTC	1 cut(s)	254
EarI	CTCTTC	1 cut(s)	254
EciI	GGCGGA	1 cut(s)	68
EclXI	CGGCCG	1 cut(s)	138
Eco130I	CCWWGG	1 cut(s)	117
Eco24I	GRGCYC	1 cut(s)	195
Eco47I	GGWCC	1 cut(s)	99
Eco52I	CGGCCG	1 cut(s)	138
Eco81I	CCTNAGG	1 cut(s)	63
EcoT14I	CCWWGG	1 cut(s)	117
EcoT38I	GRGCYC	1 cut(s)	195
ErhI	CCWWGG	1 cut(s)	117
FaeI	CATG	2 cut(s)	25, 187
FaiI	YATR	4 cut(s)	23, 125, 185, 323
FatI	CATG	2 cut(s)	21, 183
FbaI	TGATCA	1 cut(s)	243
Fnu4HI	GCNGC	5 cut(s)	35, 38, 47, 250, 338
FokI	GGATG	3 cut(s)	23, 239, 310
FriOI	GRGCYC	1 cut(s)	195
Fsp4HI	GCNGC	5 cut(s)	35, 38, 47, 250, 338
GluI	GCNGC	5 cut(s)	35, 38, 47, 250, 338
HaeIII	GGCC	1 cut(s)	140
HapII	CCGG	3 cut(s)	97, 137, 188
HgaI	GACGC	1 cut(s)	122
Hin1I	GRCGYC	1 cut(s)	114
Hin1II	CATG	2 cut(s)	25, 187
HpaII	CCGG	3 cut(s)	97, 137, 188
Hpy188I	TCNGA	1 cut(s)	243
Hpy188III	TCNNGA	4 cut(s)	8, 22, 175, 451
Hpy99I	CGWCG	2 cut(s)	116, 146
HpyAV	CCTTC	2 cut(s)	142, 403
HpyCH4III	ACNGT	2 cut(s)	397, 403
HpyCH4IV	ACGT	3 cut(s)	105, 144, 168
HpyCH4V	TGCA	2 cut(s)	34, 217
HpyF10VI	GCNNNNNNNGC	3 cut(s)	43, 46, 368
HpyF3I	CTNAG	3 cut(s)	63, 342, 423
HpySE526I	ACGT	3 cut(s)	105, 144, 168
Hsp92I	GRCGYC	1 cut(s)	114
Hsp92II	CATG	2 cut(s)	25, 187
Ksp22I	TGATCA	1 cut(s)	243
Kzo9I	GATC	2 cut(s)	177, 243
LmnI	GCTCC	1 cut(s)	19
LpnPI	CCDG	8 cut(s)	35, 75, 110, 150, 186, 201, 203, 354
Lsp1109I	GCAGC	4 cut(s)	46, 49, 58, 324
LweI	GCATC	1 cut(s)	349
MaeII	ACGT	3 cut(s)	105, 144, 168
MaeIII	GTNAC	1 cut(s)	397
MalI	GATC	2 cut(s)	179, 245
MboI	GATC	2 cut(s)	177, 243
MboII	GAAGA	3 cut(s)	88, 271, 442
MhlI	GDGCHC	1 cut(s)	195
MluCI	AATT	1 cut(s)	160
MmeI	TCCRAC	1 cut(s)	108
MslI	CAYNNNNRTG	1 cut(s)	212
MspA1I	CMGCKG	2 cut(s)	49, 249
MspI	CCGG	3 cut(s)	97, 137, 188
MspR9I	CCNGG	2 cut(s)	97, 189
Mva1269I	GAATGC	1 cut(s)	352
MvnI	CGCG	1 cut(s)	111
MwoI	GCNNNNNNNGC	3 cut(s)	43, 46, 368
NciI	CCSGG	2 cut(s)	97, 189
NdeII	GATC	2 cut(s)	177, 243
NlaIII	CATG	2 cut(s)	25, 187
NlaIV	GGNNCC	1 cut(s)	414
NmuCI	GTSAC	1 cut(s)	397
NspI	RCATGY	1 cut(s)	187
PagI	TCATGA	1 cut(s)	21
PaqCI	CACCTGC	1 cut(s)	208
PctI	GAATGC	1 cut(s)	352
PkrI	GCNGC	5 cut(s)	36, 39, 48, 251, 339
Ppu21I	YACGTR	1 cut(s)	169
PshAI	GACNNNNGTC	1 cut(s)	104
PspN4I	GGNNCC	1 cut(s)	414
PspPI	GGNCC	1 cut(s)	99
PstI	CTGCAG	1 cut(s)	36
PstNI	CAGNNNCTG	1 cut(s)	49
PvuII	CAGCTG	1 cut(s)	49
RsaI	GTAC	1 cut(s)	155
RsaNI	GTAC	1 cut(s)	154
RseI	CAYNNNNRTG	1 cut(s)	212
SatI	GCNGC	5 cut(s)	35, 38, 47, 250, 338
Sau3AI	GATC	2 cut(s)	177, 243
Sau96I	GGNCC	1 cut(s)	99
ScrFI	CCNGG	2 cut(s)	97, 189
SduI	GDGCHC	1 cut(s)	195
SfaNI	GCATC	1 cut(s)	349
SfcI	CTRYAG	2 cut(s)	32, 41
SinI	GGWCC	1 cut(s)	99
SmiMI	CAYNNNNRTG	1 cut(s)	212
SmlI	CTYRAG	1 cut(s)	194
SmoI	CTYRAG	1 cut(s)	194
Sse9I	AATT	1 cut(s)	160
SsiI	CCGC	4 cut(s)	53, 109, 249, 419
StyD4I	CCNGG	2 cut(s)	95, 187
StyI	CCWWGG	1 cut(s)	117
TaaI	ACNGT	2 cut(s)	397, 403
TaiI	ACGT	3 cut(s)	108, 147, 171
TaqI	TCGA	1 cut(s)	180
TasI	AATT	1 cut(s)	160
TauI	GCSGC	1 cut(s)	252
TscAI	CASTG	1 cut(s)	36
TseFI	GTSAC	1 cut(s)	397
TseI	GCWGC	4 cut(s)	34, 37, 46, 337
Tsp45I	GTSAC	1 cut(s)	397
TspRI	CASTG	1 cut(s)	36
VpaK11BI	GGWCC	1 cut(s)	99
XceI	RCATGY	1 cut(s)	187

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.