Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr2

Orthogroup ID

OG0001449

Physical Location & Seq

Genomic Coordinates Forward (+)

19232320 .. 19233953

Gene Structure 1634 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw2G016340.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 396 bp

ATGGCCGTGCGCGGCAGATTTCCAAAGCACTCAAACATATTAGAACTCTCAAAACCAATCAAAGAAAACATTCCAGTGATTCCACCAACCAAGAAGAGAAAAATGGATTTCAGACTCATGGGTCTGGATGCTCCAATCTTAATGGCACTGCAGCACCTAGTGGACCTCCCGGAGGAGATCAAGAAGACCTTTAACGTCTCGACCCTGACCTACGTCTGCGACACCAAGGCTATGGCTGCCACTCCGACCGACGTGAAGGAGTTACCCAATTCCTATGTCTTCGCCATCGACATGCCTGGACTTAAATCATTGAACAATCTTTTGAAAATGAATCAGTCTTTGTTATACCTTAATCACAAAGATGGTAGAAGGTTTTCTGTGGAGACTAATGAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006950 GO:0008150 GO:0009266 GO:0009408 GO:0009628 GO:0044424 GO:0044464 GO:0050896

KEGG Pathways

Metabolic & Signaling

ko04141 map04141

Pfam Domains

Protein Families

HSP20

Protein Analysis

131

Amino Acids

14.9

Weight (kDa)

9.41

Isoelectric Point (pI)

52.69

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001449)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G12020 AT5G12030
fragaria_vesca	FvH4_2g31371
malus_domestica	MD00G1181700.v1.1 MD08G1068000.v1.1 MD08G1068200.v1.1 MD08G1068300.v1.1 MD08G1068500.v1.1 MD08G1068700.v1.1 MD08G1068800.v1.1 MD15G1053500.v1.1 MD15G1053600.v1.1 MD15G1053800.v1.1
prunus_persica	Prupe.1G407100_v2.0.a1 Prupe.1G407200_v2.0.a1 Prupe.1G407300_v2.0.a1
pyrus_communis	pycom08g05660 pycom08g05670
rosa_chinensis	RchiOBHm_Chr6g0311451 RchiOBHm_Chr6g0311461 RchiOBHm_Chr6g0311471
rosa_laevigata	RLG00000010403 RLG00000010404 RLG00000010405
rosa_multiflora	Rmu_co8421495.1_g000001 Rmu_sc0006915.1_g000010 Rmu_sc0006915.1_g000011 Rmu_sc0006915.1_g000012 Rmu_sc0013619.1_g000003 Rmu_sc0013619.1_g000004 Rmu_sc0013619.1_g000006 Rmu_sc0015790.1_g000003 Rmu_sc0015790.1_g000004
rosa_roxburghii	Rroxscaffold_7G00157590 Rroxscaffold_7G00157600
rosa_rugosa	Rorug06G0389100 Rorug06G0389100 Rorug06G0389200
rosa_samantha	Rh2AG205100 Rh2BG216900 Rh2DG211400 Rh6AG503500 Rh6AG503700 Rh6BG514200 Rh6BG514300 Rh6CG520000 Rh6CG520100 Rh6DG506100
rosa_wichuraiana	Rw2G016340 Rw6G043850 Rw6G043860 Rw6G043870

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	120
AccII	CGCG	1 cut(s)	12
AciI	CCGC	1 cut(s)	12
AcoI	YGGCCR	1 cut(s)	3
AdeI	CACNNNGTG	1 cut(s)	160
AfiI	CCNNNNNNNGG	1 cut(s)	172
AgsI	TTSAA	2 cut(s)	313, 325
AjiI	CACGTC	1 cut(s)	253
AjnI	CCWGG	1 cut(s)	295
Alw26I	GTCTC	2 cut(s)	202, 377
AoxI	GGCC	1 cut(s)	3
ApeKI	GCWGC	2 cut(s)	151, 236
Asp700I	GAANNNNTTC	2 cut(s)	69, 373
AspLEI	GCGC	1 cut(s)	12
AspS9I	GGNCC	1 cut(s)	163
AsuC2I	CCSGG	1 cut(s)	170
AvaII	GGWCC	1 cut(s)	163
BbsI	GAAGAC	2 cut(s)	191, 271
BbvI	GCAGC	2 cut(s)	163, 223
BccI	CCATC	2 cut(s)	293, 356
BciT130I	CCWGG	1 cut(s)	297
BcnI	CCSGG	1 cut(s)	170
BcoDI	GTCTC	2 cut(s)	202, 377
BfaI	CTAG	1 cut(s)	158
BfmI	CTRYAG	1 cut(s)	149
BisI	GCNGC	3 cut(s)	13, 152, 237
BlsI	GCNGC	3 cut(s)	14, 153, 238
Bme1390I	CCNGG	2 cut(s)	170, 297
Bme18I	GGWCC	1 cut(s)	163
BmgBI	CACGTC	1 cut(s)	253
BmgT120I	GGNCC	1 cut(s)	163
BmrFI	CCNGG	2 cut(s)	170, 297
BmsI	GCATC	1 cut(s)	118
BoxI	GACNNNNGTC	1 cut(s)	212
BpiI	GAAGAC	2 cut(s)	191, 271
BpuMI	CCSGG	1 cut(s)	170
BsaJI	CCNNGG	1 cut(s)	225
Bsc4I	CCNNNNNNNGG	1 cut(s)	172
Bse1I	ACTGG	1 cut(s)	74
BseBI	CCWGG	1 cut(s)	297
BseDI	CCNNGG	1 cut(s)	225
BseGI	GGATG	1 cut(s)	133
BseLI	CCNNNNNNNGG	1 cut(s)	172
BseNI	ACTGG	1 cut(s)	74
BseRI	GAGGAG	1 cut(s)	188
BseXI	GCAGC	2 cut(s)	163, 223
Bsh1236I	CGCG	1 cut(s)	12
Bsh1285I	CGRYCG	1 cut(s)	249
BshFI	GGCC	1 cut(s)	5
BsiEI	CGRYCG	1 cut(s)	249
BsiSI	CCGG	1 cut(s)	170
BslI	CCNNNNNNNGG	1 cut(s)	172
BsmAI	GTCTC	2 cut(s)	202, 377
BsmBI	CGTCTC	1 cut(s)	202
BsnI	GGCC	1 cut(s)	5
Bsp143I	GATC	1 cut(s)	177
BspACI	CCGC	1 cut(s)	12
BspANI	GGCC	1 cut(s)	5
BspFNI	CGCG	1 cut(s)	12
BspMAI	CTGCAG	1 cut(s)	153
BsrI	ACTGG	1 cut(s)	74
BssECI	CCNNGG	1 cut(s)	225
BssMI	GATC	1 cut(s)	177
BssT1I	CCWWGG	1 cut(s)	225
Bst2UI	CCWGG	1 cut(s)	297
Bst6I	CTCTTC	1 cut(s)	89
BstENI	CCTNNNNNAGG	1 cut(s)	170
BstF5I	GGATG	1 cut(s)	133
BstFNI	CGCG	1 cut(s)	12
BstHHI	GCGC	1 cut(s)	12
BstKTI	GATC	1 cut(s)	180
BstMAI	GTCTC	2 cut(s)	202, 377
BstMBI	GATC	1 cut(s)	177
BstMCI	CGRYCG	1 cut(s)	249
BstMWI	GCNNNNNNNGC	1 cut(s)	236
BstNI	CCWGG	1 cut(s)	297
BstNSI	RCATGY	1 cut(s)	295
BstPAI	GACNNNNGTC	1 cut(s)	212
BstSCI	CCNGG	2 cut(s)	168, 295
BstSFI	CTRYAG	1 cut(s)	149
BstUI	CGCG	1 cut(s)	12
BstV1I	GCAGC	2 cut(s)	163, 223
BstV2I	GAAGAC	2 cut(s)	191, 271
BstXI	CCANNNNNNTGG	1 cut(s)	232
BsuRI	GGCC	1 cut(s)	5
BtrI	CACGTC	1 cut(s)	253
BtsCI	GGATG	1 cut(s)	133
BtsI	GCAGTG	1 cut(s)	146
BtsIMutI	CAGTG	2 cut(s)	81, 146
CfoI	GCGC	1 cut(s)	12
Cfr13I	GGNCC	1 cut(s)	163
CviAII	CATG	2 cut(s)	118, 292
CviJI	RGCY	3 cut(s)	5, 230, 236
CviKI_1	RGCY	3 cut(s)	5, 230, 236
DpnI	GATC	1 cut(s)	179
DpnII	GATC	1 cut(s)	177
DraIII	CACNNNGTG	1 cut(s)	160
DrdI	GACNNNNNNGTC	1 cut(s)	120
DseDI	GACNNNNNNGTC	1 cut(s)	120
EaeI	YGGCCR	1 cut(s)	3
Eam1104I	CTCTTC	1 cut(s)	89
EarI	CTCTTC	1 cut(s)	89
Eco130I	CCWWGG	1 cut(s)	225
Eco47I	GGWCC	1 cut(s)	163
EcoNI	CCTNNNNNAGG	1 cut(s)	170
EcoRII	CCWGG	1 cut(s)	295
EcoT14I	CCWWGG	1 cut(s)	225
ErhI	CCWWGG	1 cut(s)	225
Esp3I	CGTCTC	1 cut(s)	202
FaeI	CATG	2 cut(s)	121, 295
FaiI	YATR	6 cut(s)	38, 119, 233, 276, 293, 346
FalI	AAGNNNNNCTT	2 cut(s)	173, 205
FatI	CATG	2 cut(s)	117, 291
Fnu4HI	GCNGC	3 cut(s)	13, 152, 237
FokI	GGATG	1 cut(s)	140
Fsp4HI	GCNGC	3 cut(s)	13, 152, 237
FspBI	CTAG	1 cut(s)	158
GlaI	GCGC	1 cut(s)	11
GluI	GCNGC	3 cut(s)	13, 152, 237
HaeIII	GGCC	1 cut(s)	5
HapII	CCGG	1 cut(s)	170
HhaI	GCGC	1 cut(s)	12
Hin1II	CATG	2 cut(s)	121, 295
Hin6I	GCGC	1 cut(s)	10
HinP1I	GCGC	1 cut(s)	10
HinfI	GANTC	3 cut(s)	79, 114, 331
HpaII	CCGG	1 cut(s)	170
Hpy166II	GTNNAC	1 cut(s)	163
Hpy188I	TCNGA	2 cut(s)	113, 246
Hpy188III	TCNNGA	3 cut(s)	125, 181, 199
Hpy8I	GTNNAC	1 cut(s)	163
Hpy99I	CGWCG	1 cut(s)	254
HpyAV	CCTTC	2 cut(s)	250, 363
HpyCH4IV	ACGT	3 cut(s)	195, 213, 252
HpyCH4V	TGCA	1 cut(s)	151
HpyF10VI	GCNNNNNNNGC	1 cut(s)	236
HpySE526I	ACGT	3 cut(s)	195, 213, 252
Hsp92II	CATG	2 cut(s)	121, 295
HspAI	GCGC	1 cut(s)	10
Kzo9I	GATC	1 cut(s)	177
LmnI	GCTCC	1 cut(s)	136
LpnPI	CCDG	6 cut(s)	87, 110, 183, 218, 282, 309
Lsp1109I	GCAGC	2 cut(s)	163, 223
LweI	GCATC	1 cut(s)	118
MaeI	CTAG	1 cut(s)	158
MaeII	ACGT	3 cut(s)	195, 213, 252
MaeIII	GTNAC	1 cut(s)	261
MalI	GATC	1 cut(s)	179
MboI	GATC	1 cut(s)	177
MboII	GAAGA	3 cut(s)	106, 196, 271
MluCI	AATT	1 cut(s)	268
MlyI	GAGTC	1 cut(s)	108
MmeI	TCCRAC	1 cut(s)	269
MnlI	CCTC	2 cut(s)	166, 176
MroXI	GAANNNNTTC	2 cut(s)	69, 373
MseI	TTAA	4 cut(s)	140, 192, 303, 351
MslI	CAYNNNNRTG	3 cut(s)	74, 290, 360
MspI	CCGG	1 cut(s)	170
MspR9I	CCNGG	2 cut(s)	170, 297
MvaI	CCWGG	1 cut(s)	297
MvnI	CGCG	1 cut(s)	12
MwoI	GCNNNNNNNGC	1 cut(s)	236
NciI	CCSGG	1 cut(s)	170
NdeII	GATC	1 cut(s)	177
NlaIII	CATG	2 cut(s)	121, 295
NspI	RCATGY	1 cut(s)	295
PdmI	GAANNNNTTC	2 cut(s)	69, 373
PfeI	GAWTC	2 cut(s)	79, 331
PfoI	TCCNGGA	1 cut(s)	168
PkrI	GCNGC	3 cut(s)	14, 153, 238
PleI	GAGTC	1 cut(s)	108
PpsI	GAGTC	1 cut(s)	108
PshAI	GACNNNNGTC	1 cut(s)	212
Psp6I	CCWGG	1 cut(s)	295
PspGI	CCWGG	1 cut(s)	295
PspPI	GGNCC	1 cut(s)	163
PstI	CTGCAG	1 cut(s)	153
RseI	CAYNNNNRTG	3 cut(s)	74, 290, 360
SaqAI	TTAA	4 cut(s)	140, 192, 303, 351
SatI	GCNGC	3 cut(s)	13, 152, 237
Sau3AI	GATC	1 cut(s)	177
Sau96I	GGNCC	1 cut(s)	163
SchI	GAGTC	1 cut(s)	108
ScrFI	CCNGG	2 cut(s)	170, 297
SetI	ASST	9 cut(s)	159, 168, 191, 198, 212, 216, 255, 351, 374
SfaNI	GCATC	1 cut(s)	118
SfcI	CTRYAG	1 cut(s)	149
SinI	GGWCC	1 cut(s)	163
SmiMI	CAYNNNNRTG	3 cut(s)	74, 290, 360
Sse9I	AATT	1 cut(s)	268
SsiI	CCGC	1 cut(s)	12
SspMI	CTAG	1 cut(s)	158
StyD4I	CCNGG	2 cut(s)	168, 295
StyI	CCWWGG	1 cut(s)	225
TaiI	ACGT	3 cut(s)	198, 216, 255
TaqI	TCGA	2 cut(s)	200, 288
TaqII	GACCGA	1 cut(s)	263
TasI	AATT	1 cut(s)	268
TauI	GCSGC	1 cut(s)	15
TfiI	GAWTC	2 cut(s)	79, 331
Tru1I	TTAA	4 cut(s)	140, 192, 303, 351
Tru9I	TTAA	4 cut(s)	140, 192, 303, 351
TscAI	CASTG	2 cut(s)	81, 153
TseI	GCWGC	2 cut(s)	151, 236
TspDTI	ATGAA	1 cut(s)	344
TspRI	CASTG	2 cut(s)	81, 153
VpaK11BI	GGWCC	1 cut(s)	163
XagI	CCTNNNNNAGG	1 cut(s)	170
XceI	RCATGY	1 cut(s)	295
XmnI	GAANNNNTTC	2 cut(s)	69, 373
XspI	CTAG	1 cut(s)	158

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.