Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb2

Orthogroup ID

OG0001449

Physical Location & Seq

Genomic Coordinates Forward (+)

24060247 .. 24061094

Gene Structure 848 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_2g31371.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 480 bp

ATGGATTTCAGAATCATGGGTCTGGATGCTCCAATCTTGACAGCATTGCAGCACTTGGCAGATCTTCCTGAGGATGCCGAGAAGACCTTCAACGCGCCGACCCGTACCTACGTCCGCGACGCCAAGGCCATGGCTGCAACTCCGGCCGATGTGAAGGAGTACCCGAATTCCTATGTGTTTGTGATCGACATGCCGGGGCTCAAGTCAGGGGACATCAAGGTGCAGGTGGAGGATGACAATGTGCTTGTGATCAGCGGAGAGAGGAAGAGGGAGGACGAGAAAGAGGGGGCTAAGTATGTGAGGATGGAGAGGAGGGTTGGTAAGTTTATGAGGAAGTTTTCGCTGCCTGAGAATGCTAATGTTGAAGCCATTTCTGCTGTTTGCCAAGATGGTGTTCTGACTGTCAATGTGGAGAAGCTGCCGCCGCCTCAGCCAAAGAAGCCCAAGACTATCGAGTCTATACAAGAACTTCAACTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006950 GO:0008150 GO:0009266 GO:0009408 GO:0009628 GO:0044424 GO:0044464 GO:0050896

KEGG Pathways

Metabolic & Signaling

ko04141 map04141

Pfam Domains

Protein Families

HSP20

Protein Analysis

160

Amino Acids

17.82

Weight (kDa)

5.34

Isoelectric Point (pI)

42.49

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
HSP20	PF00011	50 - 152	2.7e-30	Hsp20/alpha crystallin family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0001449)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G12020 AT5G12030
fragaria_vesca	FvH4_2g31371
malus_domestica	MD00G1181700.v1.1 MD08G1068000.v1.1 MD08G1068200.v1.1 MD08G1068300.v1.1 MD08G1068500.v1.1 MD08G1068700.v1.1 MD08G1068800.v1.1 MD15G1053500.v1.1 MD15G1053600.v1.1 MD15G1053800.v1.1
prunus_persica	Prupe.1G407100_v2.0.a1 Prupe.1G407200_v2.0.a1 Prupe.1G407300_v2.0.a1
pyrus_communis	pycom08g05660 pycom08g05670
rosa_chinensis	RchiOBHm_Chr6g0311451 RchiOBHm_Chr6g0311461 RchiOBHm_Chr6g0311471
rosa_laevigata	RLG00000010403 RLG00000010404 RLG00000010405
rosa_multiflora	Rmu_co8421495.1_g000001 Rmu_sc0006915.1_g000010 Rmu_sc0006915.1_g000011 Rmu_sc0006915.1_g000012 Rmu_sc0013619.1_g000003 Rmu_sc0013619.1_g000004 Rmu_sc0013619.1_g000006 Rmu_sc0015790.1_g000003 Rmu_sc0015790.1_g000004
rosa_roxburghii	Rroxscaffold_7G00157590 Rroxscaffold_7G00157600
rosa_rugosa	Rorug06G0389100 Rorug06G0389100 Rorug06G0389200
rosa_samantha	Rh2AG205100 Rh2BG216900 Rh2DG211400 Rh6AG503500 Rh6AG503700 Rh6BG514200 Rh6BG514300 Rh6CG520000 Rh6CG520100 Rh6DG506100
rosa_wichuraiana	Rw2G016340 Rw6G043850 Rw6G043860 Rw6G043870

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	214
AasI	GACNNNNNNGTC	1 cut(s)	454
Acc36I	ACCTGC	1 cut(s)	214
AccII	CGCG	2 cut(s)	95, 117
AciI	CCGC	4 cut(s)	115, 255, 422, 425
AcoI	YGGCCR	1 cut(s)	144
AcsI	RAATTY	1 cut(s)	166
AcyI	GRCGYC	1 cut(s)	120
AfaI	GTAC	2 cut(s)	106, 161
AgsI	TTSAA	3 cut(s)	91, 365, 473
AjuI	GAANNNNNNNTTGG	2 cut(s)	378, 410
AluBI	AGCT	1 cut(s)	418
AluI	AGCT	1 cut(s)	418
AoxI	GGCC	2 cut(s)	126, 144
ApeKI	GCWGC	4 cut(s)	49, 134, 343, 418
ApoI	RAATTY	1 cut(s)	166
Asp700I	GAANNNNTTC	1 cut(s)	86
AspLEI	GCGC	1 cut(s)	97
AsuC2I	CCSGG	1 cut(s)	195
AxyI	CCTNAGG	1 cut(s)	69
BanII	GRGCYC	1 cut(s)	201
BbsI	GAAGAC	1 cut(s)	89
BbvCI	CCTCAGC	1 cut(s)	429
BbvI	GCAGC	4 cut(s)	61, 121, 330, 405
BccI	CCATC	2 cut(s)	298, 383
BclI	TGATCA	1 cut(s)	249
BcnI	CCSGG	1 cut(s)	195
BfuAI	ACCTGC	1 cut(s)	214
BglII	AGATCT	1 cut(s)	61
BisI	GCNGC	6 cut(s)	50, 135, 344, 419, 422, 425
BlsI	GCNGC	6 cut(s)	51, 136, 345, 420, 423, 426
Bme1390I	CCNGG	1 cut(s)	195
BmrFI	CCNGG	1 cut(s)	195
BmsI	GCATC	2 cut(s)	16, 64
BpiI	GAAGAC	1 cut(s)	89
Bpu10I	CCTNAGC	1 cut(s)	429
BpuEI	CTTGAG	1 cut(s)	185
BpuMI	CCSGG	1 cut(s)	195
BsaHI	GRCGYC	1 cut(s)	120
BsaJI	CCNNGG	3 cut(s)	123, 129, 194
BsaXI	ACNNNNNCTCC	2 cut(s)	304, 334
Bse21I	CCTNAGG	1 cut(s)	69
Bse3DI	GCAATG	1 cut(s)	44
BseDI	CCNNGG	3 cut(s)	123, 129, 194
BseGI	GGATG	4 cut(s)	31, 79, 238, 309
BseMI	GCAATG	1 cut(s)	44
BseMII	CTCAG	3 cut(s)	60, 339, 443
BseRI	GAGGAG	1 cut(s)	325
BseX3I	CGGCCG	1 cut(s)	144
BseXI	GCAGC	4 cut(s)	61, 121, 330, 405
BsgI	GTGCAG	1 cut(s)	242
Bsh1236I	CGCG	2 cut(s)	95, 117
Bsh1285I	CGRYCG	1 cut(s)	147
BshFI	GGCC	2 cut(s)	128, 146
BsiEI	CGRYCG	1 cut(s)	147
BsiSI	CCGG	2 cut(s)	143, 194
BslFI	GGGAC	1 cut(s)	224
BsmFI	GGGAC	1 cut(s)	224
BsmI	GAATGC	1 cut(s)	358
BsnI	GGCC	2 cut(s)	128, 146
Bsp1286I	GDGCHC	1 cut(s)	201
Bsp143I	GATC	3 cut(s)	61, 183, 249
Bsp19I	CCATGG	1 cut(s)	129
BspACI	CCGC	4 cut(s)	115, 255, 422, 425
BspANI	GGCC	2 cut(s)	128, 146
BspCNI	CTCAG	3 cut(s)	61, 340, 442
BspFNI	CGCG	2 cut(s)	95, 117
BspMI	ACCTGC	1 cut(s)	214
BsrDI	GCAATG	1 cut(s)	44
BssECI	CCNNGG	3 cut(s)	123, 129, 194
BssMI	GATC	3 cut(s)	61, 183, 249
BssNI	GRCGYC	1 cut(s)	120
BssT1I	CCWWGG	2 cut(s)	123, 129
Bst4CI	ACNGT	1 cut(s)	403
Bst6I	CTCTTC	1 cut(s)	260
BstACI	GRCGYC	1 cut(s)	120
BstDEI	CTNAG	4 cut(s)	69, 291, 348, 429
BstDSI	CCRYGG	1 cut(s)	129
BstF5I	GGATG	4 cut(s)	31, 79, 238, 309
BstFNI	CGCG	2 cut(s)	95, 117
BstHHI	GCGC	1 cut(s)	97
BstKTI	GATC	3 cut(s)	64, 186, 252
BstMBI	GATC	3 cut(s)	61, 183, 249
BstMCI	CGRYCG	1 cut(s)	147
BstMWI	GCNNNNNNNGC	6 cut(s)	134, 143, 374, 424, 430, 439
BstNSI	RCATGY	1 cut(s)	193
BstSCI	CCNGG	1 cut(s)	193
BstUI	CGCG	2 cut(s)	95, 117
BstV1I	GCAGC	4 cut(s)	61, 121, 330, 405
BstV2I	GAAGAC	1 cut(s)	89
BstX2I	RGATCY	1 cut(s)	61
BstXI	CCANNNNNNTGG	1 cut(s)	130
BstYI	RGATCY	1 cut(s)	61
BstZI	CGGCCG	1 cut(s)	144
Bsu36I	CCTNAGG	1 cut(s)	69
BsuRI	GGCC	2 cut(s)	128, 146
BtgI	CCRYGG	1 cut(s)	129
BtsCI	GGATG	4 cut(s)	31, 79, 238, 309
BveI	ACCTGC	1 cut(s)	214
CfoI	GCGC	1 cut(s)	97
CseI	GACGC	1 cut(s)	128
Csp6I	GTAC	2 cut(s)	105, 160
CviAII	CATG	3 cut(s)	16, 130, 190
CviJI	RGCY	9 cut(s)	128, 134, 146, 199, 290, 368, 418, 433, 442
CviKI_1	RGCY	9 cut(s)	128, 134, 146, 199, 290, 368, 418, 433, 442
CviQI	GTAC	2 cut(s)	105, 160
DdeI	CTNAG	4 cut(s)	69, 291, 348, 429
DpnI	GATC	3 cut(s)	63, 185, 251
DpnII	GATC	3 cut(s)	61, 183, 249
DrdI	GACNNNNNNGTC	1 cut(s)	454
DseDI	GACNNNNNNGTC	1 cut(s)	454
EaeI	YGGCCR	1 cut(s)	144
EagI	CGGCCG	1 cut(s)	144
Eam1104I	CTCTTC	1 cut(s)	260
EarI	CTCTTC	1 cut(s)	260
EclXI	CGGCCG	1 cut(s)	144
Eco130I	CCWWGG	2 cut(s)	123, 129
Eco24I	GRGCYC	1 cut(s)	201
Eco52I	CGGCCG	1 cut(s)	144
Eco81I	CCTNAGG	1 cut(s)	69
EcoRI	GAATTC	1 cut(s)	166
EcoT14I	CCWWGG	2 cut(s)	123, 129
EcoT38I	GRGCYC	1 cut(s)	201
ErhI	CCWWGG	2 cut(s)	123, 129
FaeI	CATG	3 cut(s)	19, 133, 193
FaiI	YATR	7 cut(s)	17, 131, 174, 191, 297, 329, 461
FaqI	GGGAC	1 cut(s)	224
FatI	CATG	3 cut(s)	15, 129, 189
FbaI	TGATCA	1 cut(s)	249
Fnu4HI	GCNGC	6 cut(s)	50, 135, 344, 419, 422, 425
FokI	GGATG	4 cut(s)	38, 86, 245, 316
FriOI	GRGCYC	1 cut(s)	201
Fsp4HI	GCNGC	6 cut(s)	50, 135, 344, 419, 422, 425
GlaI	GCGC	1 cut(s)	96
GluI	GCNGC	6 cut(s)	50, 135, 344, 419, 422, 425
HaeIII	GGCC	2 cut(s)	128, 146
HapII	CCGG	2 cut(s)	143, 194
HgaI	GACGC	1 cut(s)	128
HhaI	GCGC	1 cut(s)	97
Hin1I	GRCGYC	1 cut(s)	120
Hin1II	CATG	3 cut(s)	19, 133, 193
Hin6I	GCGC	1 cut(s)	95
HinP1I	GCGC	1 cut(s)	95
HinfI	GANTC	2 cut(s)	12, 455
HpaII	CCGG	2 cut(s)	143, 194
Hpy188I	TCNGA	2 cut(s)	11, 399
Hpy188III	TCNNGA	3 cut(s)	23, 37, 68
Hpy99I	CGWCG	1 cut(s)	122
HpyAV	CCTTC	2 cut(s)	97, 148
HpyCH4III	ACNGT	1 cut(s)	403
HpyCH4IV	ACGT	1 cut(s)	111
HpyCH4V	TGCA	3 cut(s)	49, 137, 223
HpyF10VI	GCNNNNNNNGC	6 cut(s)	134, 143, 374, 424, 430, 439
HpyF3I	CTNAG	4 cut(s)	69, 291, 348, 429
HpySE526I	ACGT	1 cut(s)	111
Hsp92I	GRCGYC	1 cut(s)	120
Hsp92II	CATG	3 cut(s)	19, 133, 193
HspAI	GCGC	1 cut(s)	95
Ksp22I	TGATCA	1 cut(s)	249
Kzo9I	GATC	3 cut(s)	61, 183, 249
LmnI	GCTCC	1 cut(s)	34
LpnPI	CCDG	7 cut(s)	8, 81, 156, 192, 207, 209, 360
Lsp1109I	GCAGC	4 cut(s)	61, 121, 330, 405
LweI	GCATC	2 cut(s)	16, 64
MaeII	ACGT	1 cut(s)	111
MalI	GATC	3 cut(s)	63, 185, 251
MboI	GATC	3 cut(s)	61, 183, 249
MboII	GAAGA	3 cut(s)	56, 94, 277
MflI	RGATCY	1 cut(s)	61
MhlI	GDGCHC	1 cut(s)	201
MluCI	AATT	1 cut(s)	166
MlyI	GAGTC	1 cut(s)	464
MroXI	GAANNNNTTC	1 cut(s)	86
MslI	CAYNNNNRTG	1 cut(s)	218
MspA1I	CMGCKG	1 cut(s)	255
MspI	CCGG	2 cut(s)	143, 194
MspR9I	CCNGG	1 cut(s)	195
Mva1269I	GAATGC	1 cut(s)	358
MvnI	CGCG	2 cut(s)	95, 117
MwoI	GCNNNNNNNGC	6 cut(s)	134, 143, 374, 424, 430, 439
NciI	CCSGG	1 cut(s)	195
NcoI	CCATGG	1 cut(s)	129
NdeII	GATC	3 cut(s)	61, 183, 249
NlaIII	CATG	3 cut(s)	19, 133, 193
NmeAIII	GCCGAG	1 cut(s)	103
NspI	RCATGY	1 cut(s)	193
PaqCI	CACCTGC	1 cut(s)	214
PctI	GAATGC	1 cut(s)	358
PdmI	GAANNNNTTC	1 cut(s)	86
PfeI	GAWTC	1 cut(s)	12
PkrI	GCNGC	6 cut(s)	51, 136, 345, 420, 423, 426
PleI	GAGTC	1 cut(s)	463
PpsI	GAGTC	1 cut(s)	463
PsuI	RGATCY	1 cut(s)	61
RsaI	GTAC	2 cut(s)	106, 161
RsaNI	GTAC	2 cut(s)	105, 160
RseI	CAYNNNNRTG	1 cut(s)	218
SatI	GCNGC	6 cut(s)	50, 135, 344, 419, 422, 425
Sau3AI	GATC	3 cut(s)	61, 183, 249
SchI	GAGTC	1 cut(s)	464
ScrFI	CCNGG	1 cut(s)	195
SduI	GDGCHC	1 cut(s)	201
SetI	ASST	6 cut(s)	89, 110, 114, 222, 228, 420
SfaNI	GCATC	2 cut(s)	16, 64
SmiMI	CAYNNNNRTG	1 cut(s)	218
SmlI	CTYRAG	1 cut(s)	200
SmoI	CTYRAG	1 cut(s)	200
Sse9I	AATT	1 cut(s)	166
SsiI	CCGC	4 cut(s)	115, 255, 422, 425
StyD4I	CCNGG	1 cut(s)	193
StyI	CCWWGG	2 cut(s)	123, 129
TaaI	ACNGT	1 cut(s)	403
TaiI	ACGT	1 cut(s)	114
TaqI	TCGA	2 cut(s)	186, 453
TasI	AATT	1 cut(s)	166
TauI	GCSGC	2 cut(s)	424, 427
TfiI	GAWTC	1 cut(s)	12
TseI	GCWGC	4 cut(s)	49, 134, 343, 418
XapI	RAATTY	1 cut(s)	166
XceI	RCATGY	1 cut(s)	193
XmnI	GAANNNNTTC	1 cut(s)	86

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.