Prupe.1G407300_v2.0.a1

kDa class II heat shock protein-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
OG0001449
Physical Location & Seq
Forward (+)
35724982 .. 35725854
873 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.1G407300.1

Sequence Viewer

Length: 471 bp
ATGGACGTGAGAATCGCGGGTTTGGATTCCCCACTCTTCTCCACACTGCAGCACATCATGGACTTCACCGACGAGCCTGACAAATCGTTCAACGCCCCCACCCGCACCTACGTCCGCGACGCCAAGGCCATGGCGTCCACGCCGGCGGACGTCAAGGAGTATCCCAACTCCTATGTCTTCGTCGTGGACATGCCAGGCCTCAAGTCCGGAGACATCAAGGTCCAGGTGGAGGACGACAATGTGCTTCTGATCACCGGCGAGAGGAAGAGGGAGGAGGAGAAGGAGGGGGCTAAGTATGTCAGGATGGAGAGGAGGGTCGGCAAGTTTATGAGGAAGTTTGTGCTGCCTGAGAATGCTAATGTGGAAGCCATTTCTGCTGTATGCCAAGATGGGGTCCTGACTGTGACTGTGGAGAAGCTGCCTCCACCTGAGCCAAAGAAGCCCAAGACCATTGAGGTCAAGATTGCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04141 map04141
Pfam Domains
Protein Families
HSP20

Protein Analysis

157

Amino Acids

17.51

Weight (kDa)

5.58

Isoelectric Point (pI)

39.38

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 218
AatII GACGTC 1 cut(s) 153
AccII CGCG 2 cut(s) 17, 117
AccIII TCCGGA 1 cut(s) 206
AciI CCGC 4 cut(s) 17, 103, 115, 146
AcyI GRCGYC 3 cut(s) 120, 134, 150
AfiI CCNNNNNNNGG 3 cut(s) 229, 261, 391
AgsI TTSAA 1 cut(s) 91
AjiI CACGTC 1 cut(s) 7
AjnI CCWGG 2 cut(s) 193, 222
AluBI AGCT 1 cut(s) 418
AluI AGCT 1 cut(s) 418
Alw26I GTCTC 1 cut(s) 204
Aor13HI TCCGGA 1 cut(s) 206
AoxI GGCC 2 cut(s) 126, 196
ApeKI GCWGC 3 cut(s) 49, 343, 418
AspS9I GGNCC 2 cut(s) 220, 394
AsuHPI GGTGA 2 cut(s) 58, 244
AvaII GGWCC 2 cut(s) 220, 394
BbsI GAAGAC 1 cut(s) 169
BbvI GCAGC 3 cut(s) 61, 330, 405
BccI CCATC 2 cut(s) 298, 383
BciT130I CCWGG 2 cut(s) 195, 224
BciVI GTATCC 1 cut(s) 171
BclI TGATCA 1 cut(s) 249
BcoDI GTCTC 1 cut(s) 204
BfmI CTRYAG 1 cut(s) 47
BfuI GTATCC 1 cut(s) 171
BisI GCNGC 3 cut(s) 50, 344, 419
BlsI GCNGC 3 cut(s) 51, 345, 420
Bme1390I CCNGG 2 cut(s) 195, 224
Bme18I GGWCC 2 cut(s) 220, 394
BmgBI CACGTC 1 cut(s) 7
BmgT120I GGNCC 2 cut(s) 220, 394
BmiI GGNNCC 1 cut(s) 395
BmrFI CCNGG 2 cut(s) 195, 224
BpiI GAAGAC 1 cut(s) 169
Bpu10I CCTNAGC 1 cut(s) 429
BpuEI CTTGAG 1 cut(s) 185
BsaHI GRCGYC 3 cut(s) 120, 134, 150
BsaJI CCNNGG 2 cut(s) 123, 129
BsaWI WCCGGW 1 cut(s) 206
Bsc4I CCNNNNNNNGG 3 cut(s) 229, 261, 391
Bse118I RCCGGY 2 cut(s) 142, 254
BseAI TCCGGA 1 cut(s) 206
BseBI CCWGG 2 cut(s) 195, 224
BseDI CCNNGG 2 cut(s) 123, 129
BseGI GGATG 1 cut(s) 309
BseLI CCNNNNNNNGG 3 cut(s) 229, 261, 391
BseMII CTCAG 2 cut(s) 339, 420
BseRI GAGGAG 3 cut(s) 287, 290, 325
BseXI GCAGC 3 cut(s) 61, 330, 405
Bsh1236I CGCG 2 cut(s) 17, 117
BshFI GGCC 2 cut(s) 128, 198
BsiSI CCGG 3 cut(s) 143, 207, 255
BslI CCNNNNNNNGG 3 cut(s) 229, 261, 391
BsmAI GTCTC 1 cut(s) 204
BsmI GAATGC 1 cut(s) 358
BsnI GGCC 2 cut(s) 128, 198
Bsp13I TCCGGA 1 cut(s) 206
Bsp143I GATC 1 cut(s) 249
Bsp19I CCATGG 1 cut(s) 129
BspACI CCGC 4 cut(s) 17, 103, 115, 146
BspANI GGCC 2 cut(s) 128, 198
BspCNI CTCAG 2 cut(s) 340, 421
BspEI TCCGGA 1 cut(s) 206
BspFNI CGCG 2 cut(s) 17, 117
BspLI GGNNCC 1 cut(s) 395
BspMAI CTGCAG 1 cut(s) 51
BsrFI RCCGGY 2 cut(s) 142, 254
BssAI RCCGGY 2 cut(s) 142, 254
BssECI CCNNGG 2 cut(s) 123, 129
BssMI GATC 1 cut(s) 249
BssNI GRCGYC 3 cut(s) 120, 134, 150
BssT1I CCWWGG 2 cut(s) 123, 129
Bst2UI CCWGG 2 cut(s) 195, 224
Bst4CI ACNGT 2 cut(s) 403, 409
Bst6I CTCTTC 2 cut(s) 41, 260
BstACI GRCGYC 3 cut(s) 120, 134, 150
BstC8I GCNNGC 1 cut(s) 144
BstDEI CTNAG 3 cut(s) 291, 348, 429
BstDSI CCRYGG 1 cut(s) 129
BstF5I GGATG 1 cut(s) 309
BstFNI CGCG 2 cut(s) 17, 117
BstKTI GATC 1 cut(s) 252
BstMAI GTCTC 1 cut(s) 204
BstMBI GATC 1 cut(s) 249
BstMWI GCNNNNNNNGC 2 cut(s) 374, 439
BstNI CCWGG 2 cut(s) 195, 224
BstNSI RCATGY 1 cut(s) 193
BstSCI CCNGG 2 cut(s) 193, 222
BstSFI CTRYAG 1 cut(s) 47
BstUI CGCG 2 cut(s) 17, 117
BstV1I GCAGC 3 cut(s) 61, 330, 405
BstV2I GAAGAC 1 cut(s) 169
BstXI CCANNNNNNTGG 1 cut(s) 130
BsuI GTATCC 1 cut(s) 171
BsuRI GGCC 2 cut(s) 128, 198
BtgI CCRYGG 1 cut(s) 129
BtrI CACGTC 1 cut(s) 7
BtsCI GGATG 1 cut(s) 309
BtsI GCAGTG 1 cut(s) 44
BtsIMutI CAGTG 1 cut(s) 44
Cac8I GCNNGC 1 cut(s) 144
Cfr10I RCCGGY 2 cut(s) 142, 254
Cfr13I GGNCC 2 cut(s) 220, 394
CseI GACGC 2 cut(s) 123, 128
CviAII CATG 3 cut(s) 58, 130, 190
CviJI RGCY 8 cut(s) 76, 128, 198, 290, 368, 418, 433, 442
CviKI_1 RGCY 8 cut(s) 76, 128, 198, 290, 368, 418, 433, 442
DdeI CTNAG 3 cut(s) 291, 348, 429
DpnI GATC 1 cut(s) 251
DpnII GATC 1 cut(s) 249
DrdI GACNNNNNNGTC 1 cut(s) 218
DseDI GACNNNNNNGTC 1 cut(s) 218
Eam1104I CTCTTC 2 cut(s) 41, 260
EarI CTCTTC 2 cut(s) 41, 260
EciI GGCGGA 1 cut(s) 161
Eco130I CCWWGG 2 cut(s) 123, 129
Eco147I AGGCCT 1 cut(s) 198
Eco47I GGWCC 2 cut(s) 220, 394
EcoO109I RGGNCCY 1 cut(s) 394
EcoRII CCWGG 2 cut(s) 193, 222
EcoT14I CCWWGG 2 cut(s) 123, 129
ErhI CCWWGG 2 cut(s) 123, 129
FaeI CATG 3 cut(s) 61, 133, 193
FaiI YATR 7 cut(s) 59, 131, 174, 191, 297, 329, 382
FatI CATG 3 cut(s) 57, 129, 189
FauI CCCGC 2 cut(s) 10, 110
FbaI TGATCA 1 cut(s) 249
Fnu4HI GCNGC 3 cut(s) 50, 344, 419
FokI GGATG 1 cut(s) 316
Fsp4HI GCNGC 3 cut(s) 50, 344, 419
GluI GCNGC 3 cut(s) 50, 344, 419
HaeIII GGCC 2 cut(s) 128, 198
HapII CCGG 3 cut(s) 143, 207, 255
HgaI GACGC 2 cut(s) 123, 128
Hin1I GRCGYC 3 cut(s) 120, 134, 150
Hin1II CATG 3 cut(s) 61, 133, 193
HinfI GANTC 2 cut(s) 12, 26
HpaII CCGG 3 cut(s) 143, 207, 255
HphI GGTGA 2 cut(s) 58, 244
Hpy166II GTNNAC 2 cut(s) 138, 187
Hpy188I TCNGA 1 cut(s) 249
Hpy188III TCNNGA 4 cut(s) 207, 301, 397, 460
Hpy8I GTNNAC 2 cut(s) 138, 187
Hpy99I CGWCG 3 cut(s) 74, 122, 185
HpyAV CCTTC 1 cut(s) 274
HpyCH4III ACNGT 2 cut(s) 403, 409
HpyCH4IV ACGT 3 cut(s) 6, 111, 150
HpyCH4V TGCA 1 cut(s) 49
HpyF10VI GCNNNNNNNGC 2 cut(s) 374, 439
HpyF3I CTNAG 3 cut(s) 291, 348, 429
HpySE526I ACGT 3 cut(s) 6, 111, 150
Hsp92I GRCGYC 3 cut(s) 120, 134, 150
Hsp92II CATG 3 cut(s) 61, 133, 193
Kpn2I TCCGGA 1 cut(s) 206
KroI GCCGGC 1 cut(s) 142
KroNI GCCGGC 1 cut(s) 144
Ksp22I TGATCA 1 cut(s) 249
Kzo9I GATC 1 cut(s) 249
Lsp1109I GCAGC 3 cut(s) 61, 330, 405
MaeII ACGT 3 cut(s) 6, 111, 150
MaeIII GTNAC 1 cut(s) 403
MalI GATC 1 cut(s) 251
MboI GATC 1 cut(s) 249
MboII GAAGA 3 cut(s) 28, 169, 277
MreI CGCCGGCG 1 cut(s) 142
MroI TCCGGA 1 cut(s) 206
MroNI GCCGGC 1 cut(s) 142
MspI CCGG 3 cut(s) 143, 207, 255
MspR9I CCNGG 2 cut(s) 195, 224
Mva1269I GAATGC 1 cut(s) 358
MvaI CCWGG 2 cut(s) 195, 224
MvnI CGCG 2 cut(s) 17, 117
MwoI GCNNNNNNNGC 2 cut(s) 374, 439
NaeI GCCGGC 1 cut(s) 144
NcoI CCATGG 1 cut(s) 129
NdeII GATC 1 cut(s) 249
NgoMIV GCCGGC 1 cut(s) 142
NlaIII CATG 3 cut(s) 61, 133, 193
NlaIV GGNNCC 1 cut(s) 395
NmuCI GTSAC 1 cut(s) 403
NspI RCATGY 1 cut(s) 193
PceI AGGCCT 1 cut(s) 198
PctI GAATGC 1 cut(s) 358
PdiI GCCGGC 1 cut(s) 144
PfeI GAWTC 2 cut(s) 12, 26
PkrI GCNGC 3 cut(s) 51, 345, 420
PpuMI RGGWCCY 1 cut(s) 394
Psp5II RGGWCCY 1 cut(s) 394
Psp6I CCWGG 2 cut(s) 193, 222
PspGI CCWGG 2 cut(s) 193, 222
PspN4I GGNNCC 1 cut(s) 395
PspPI GGNCC 2 cut(s) 220, 394
PspPPI RGGWCCY 1 cut(s) 394
PstI CTGCAG 1 cut(s) 51
SatI GCNGC 3 cut(s) 50, 344, 419
Sau3AI GATC 1 cut(s) 249
Sau96I GGNCC 2 cut(s) 220, 394
ScrFI CCNGG 2 cut(s) 195, 224
SetI ASST 9 cut(s) 9, 110, 114, 153, 222, 228, 420, 430, 459
SfcI CTRYAG 1 cut(s) 47
SgrAI CRCCGGYG 2 cut(s) 142, 254
SinI GGWCC 2 cut(s) 220, 394
SmlI CTYRAG 1 cut(s) 200
SmoI CTYRAG 1 cut(s) 200
SseBI AGGCCT 1 cut(s) 198
SsiI CCGC 4 cut(s) 17, 103, 115, 146
StuI AGGCCT 1 cut(s) 198
StyD4I CCNGG 2 cut(s) 193, 222
StyI CCWWGG 2 cut(s) 123, 129
TaaI ACNGT 2 cut(s) 403, 409
TaiI ACGT 3 cut(s) 9, 114, 153
TfiI GAWTC 2 cut(s) 12, 26
TscAI CASTG 1 cut(s) 51
TseFI GTSAC 1 cut(s) 403
TseI GCWGC 3 cut(s) 49, 343, 418
Tsp45I GTSAC 1 cut(s) 403
TspRI CASTG 1 cut(s) 51
VpaK11BI GGWCC 2 cut(s) 220, 394
XceI RCATGY 1 cut(s) 193
ZraI GACGTC 1 cut(s) 151
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.