Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr15

Orthogroup ID

OG0001449

Physical Location & Seq

Genomic Coordinates Forward (+)

3675367 .. 3676018

Gene Structure 652 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD15G1053800.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 471 bp

ATGGACATCAGAATCCCCGGTTTTGATGCCCCACTCTTCTCCACACTGCAGCACATCATGGACGTCGCCGACGACGCCGAGAAGTCATTCAACGCCCCCACCCGGACCTACGTCCGCGACGCCAAGGCGATGGCCGCGACGCCAGCCGACGTCAAGGAGTACCCTAACTCCTACGTGTTCGTGGTGGACATGCCAGGGTTGAAGTCCGGGGACATAAAGGTCCAGGTGGAGGACGACAATGTACTTCTGATCAGCGGCGAGAGGAAGCGGGAGGAGGAGAAGGAAGGGGTTAAGTACGTGAGGATGGAGAGGAGGGTTGGCAAGTTCATGAGGAAGTTTGTGCTGCCGGAGAATGCGAATGTAGATGCGATTTCTGCTGTTTGCCAGGATGGGGTTCTGACTGTGACGGTTGAGAAGCTGCCGCCACCGGAGCCAAAGAAGCCGAAGACAATCGAGGTCAAGATCGGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04141 map04141

Pfam Domains

Protein Families

HSP20

Protein Analysis

157

Amino Acids

17.44

Weight (kDa)

5.57

Isoelectric Point (pI)

36.84

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
HSP20	PF00011	50 - 154	2.4e-31	Hsp20/alpha crystallin family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001449)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G12020 AT5G12030
fragaria_vesca	FvH4_2g31371
malus_domestica	MD00G1181700.v1.1 MD08G1068000.v1.1 MD08G1068200.v1.1 MD08G1068300.v1.1 MD08G1068500.v1.1 MD08G1068700.v1.1 MD08G1068800.v1.1 MD15G1053500.v1.1 MD15G1053600.v1.1 MD15G1053800.v1.1
prunus_persica	Prupe.1G407100_v2.0.a1 Prupe.1G407200_v2.0.a1 Prupe.1G407300_v2.0.a1
pyrus_communis	pycom08g05660 pycom08g05670
rosa_chinensis	RchiOBHm_Chr6g0311451 RchiOBHm_Chr6g0311461 RchiOBHm_Chr6g0311471
rosa_laevigata	RLG00000010403 RLG00000010404 RLG00000010405
rosa_multiflora	Rmu_co8421495.1_g000001 Rmu_sc0006915.1_g000010 Rmu_sc0006915.1_g000011 Rmu_sc0006915.1_g000012 Rmu_sc0013619.1_g000003 Rmu_sc0013619.1_g000004 Rmu_sc0013619.1_g000006 Rmu_sc0015790.1_g000003 Rmu_sc0015790.1_g000004
rosa_roxburghii	Rroxscaffold_7G00157590 Rroxscaffold_7G00157600
rosa_rugosa	Rorug06G0389100 Rorug06G0389100 Rorug06G0389200
rosa_samantha	Rh2AG205100 Rh2BG216900 Rh2DG211400 Rh6AG503500 Rh6AG503700 Rh6BG514200 Rh6BG514300 Rh6CG520000 Rh6CG520100 Rh6DG506100
rosa_wichuraiana	Rw2G016340 Rw6G043850 Rw6G043860 Rw6G043870

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	218
AatII	GACGTC	2 cut(s)	66, 153
AccII	CGCG	2 cut(s)	117, 137
AciI	CCGC	5 cut(s)	115, 135, 255, 268, 422
AcoI	YGGCCR	1 cut(s)	132
AcyI	GRCGYC	5 cut(s)	63, 75, 120, 140, 150
AfaI	GTAC	3 cut(s)	161, 243, 296
AfiI	CCNNNNNNNGG	3 cut(s)	102, 229, 391
AflIII	ACRYGT	1 cut(s)	174
AgsI	TTSAA	2 cut(s)	91, 202
AjnI	CCWGG	3 cut(s)	193, 222, 384
AluBI	AGCT	1 cut(s)	418
AluI	AGCT	1 cut(s)	418
AoxI	GGCC	1 cut(s)	132
ApeKI	GCWGC	3 cut(s)	49, 343, 418
Asp700I	GAANNNNTTC	1 cut(s)	86
AspS9I	GGNCC	2 cut(s)	105, 220
AsuC2I	CCSGG	3 cut(s)	18, 103, 208
AvaII	GGWCC	2 cut(s)	105, 220
BbsI	GAAGAC	1 cut(s)	452
BbvI	GCAGC	3 cut(s)	61, 330, 405
BccI	CCATC	3 cut(s)	124, 298, 383
BciT130I	CCWGG	3 cut(s)	195, 224, 386
BclI	TGATCA	1 cut(s)	249
BcnI	CCSGG	3 cut(s)	18, 103, 208
BfmI	CTRYAG	1 cut(s)	47
BisI	GCNGC	6 cut(s)	50, 135, 256, 344, 419, 422
BlsI	GCNGC	6 cut(s)	51, 136, 257, 345, 420, 423
Bme1390I	CCNGG	6 cut(s)	18, 103, 195, 208, 224, 386
Bme18I	GGWCC	2 cut(s)	105, 220
BmgT120I	GGNCC	2 cut(s)	105, 220
BmiI	GGNNCC	1 cut(s)	432
BmrFI	CCNGG	6 cut(s)	18, 103, 195, 208, 224, 386
BmsI	GCATC	2 cut(s)	16, 355
BoxI	GACNNNNGTC	1 cut(s)	110
BpiI	GAAGAC	1 cut(s)	452
BpuMI	CCSGG	3 cut(s)	18, 103, 208
BsaAI	YACGTR	2 cut(s)	175, 298
BsaHI	GRCGYC	5 cut(s)	63, 75, 120, 140, 150
BsaJI	CCNNGG	4 cut(s)	16, 123, 194, 207
BsaWI	WCCGGW	1 cut(s)	427
BsaXI	ACNNNNNCTCC	2 cut(s)	152, 182
Bsc4I	CCNNNNNNNGG	3 cut(s)	102, 229, 391
BseBI	CCWGG	3 cut(s)	195, 224, 386
BseDI	CCNNGG	4 cut(s)	16, 123, 194, 207
BseGI	GGATG	2 cut(s)	309, 394
BseLI	CCNNNNNNNGG	3 cut(s)	102, 229, 391
BseRI	GAGGAG	3 cut(s)	287, 290, 325
BseXI	GCAGC	3 cut(s)	61, 330, 405
Bsh1236I	CGCG	2 cut(s)	117, 137
BshFI	GGCC	1 cut(s)	134
BsiSI	CCGG	5 cut(s)	18, 103, 207, 347, 428
BslFI	GGGAC	1 cut(s)	224
BslI	CCNNNNNNNGG	3 cut(s)	102, 229, 391
BsmFI	GGGAC	1 cut(s)	224
BsmI	GAATGC	1 cut(s)	358
BsnI	GGCC	1 cut(s)	134
Bsp143I	GATC	2 cut(s)	249, 462
BspACI	CCGC	5 cut(s)	115, 135, 255, 268, 422
BspANI	GGCC	1 cut(s)	134
BspFNI	CGCG	2 cut(s)	117, 137
BspHI	TCATGA	1 cut(s)	327
BspLI	GGNNCC	1 cut(s)	432
BspMAI	CTGCAG	1 cut(s)	51
BssECI	CCNNGG	4 cut(s)	16, 123, 194, 207
BssMI	GATC	2 cut(s)	249, 462
BssNI	GRCGYC	5 cut(s)	63, 75, 120, 140, 150
BssT1I	CCWWGG	1 cut(s)	123
Bst2UI	CCWGG	3 cut(s)	195, 224, 386
Bst4CI	ACNGT	2 cut(s)	403, 409
Bst6I	CTCTTC	1 cut(s)	41
BstACI	GRCGYC	5 cut(s)	63, 75, 120, 140, 150
BstBAI	YACGTR	2 cut(s)	175, 298
BstC8I	GCNNGC	1 cut(s)	144
BstF5I	GGATG	2 cut(s)	309, 394
BstFNI	CGCG	2 cut(s)	117, 137
BstKTI	GATC	2 cut(s)	252, 465
BstMBI	GATC	2 cut(s)	249, 462
BstMWI	GCNNNNNNNGC	6 cut(s)	74, 134, 143, 374, 430, 439
BstNI	CCWGG	3 cut(s)	195, 224, 386
BstNSI	RCATGY	1 cut(s)	193
BstPAI	GACNNNNGTC	1 cut(s)	110
BstSCI	CCNGG	6 cut(s)	16, 101, 193, 206, 222, 384
BstSFI	CTRYAG	1 cut(s)	47
BstUI	CGCG	2 cut(s)	117, 137
BstV1I	GCAGC	3 cut(s)	61, 330, 405
BstV2I	GAAGAC	1 cut(s)	452
BstXI	CCANNNNNNTGG	1 cut(s)	130
BsuRI	GGCC	1 cut(s)	134
BtgZI	GCGATG	1 cut(s)	143
BtsCI	GGATG	2 cut(s)	309, 394
BtsI	GCAGTG	1 cut(s)	44
BtsIMutI	CAGTG	1 cut(s)	44
Cac8I	GCNNGC	1 cut(s)	144
CciI	TCATGA	1 cut(s)	327
Cfr13I	GGNCC	2 cut(s)	105, 220
CseI	GACGC	3 cut(s)	83, 128, 148
Csp6I	GTAC	3 cut(s)	160, 242, 295
CviAII	CATG	3 cut(s)	58, 190, 328
CviJI	RGCY	5 cut(s)	134, 146, 418, 433, 442
CviKI_1	RGCY	5 cut(s)	134, 146, 418, 433, 442
CviQI	GTAC	3 cut(s)	160, 242, 295
DpnI	GATC	2 cut(s)	251, 464
DpnII	GATC	2 cut(s)	249, 462
DrdI	GACNNNNNNGTC	1 cut(s)	218
DseDI	GACNNNNNNGTC	1 cut(s)	218
EaeI	YGGCCR	1 cut(s)	132
Eam1104I	CTCTTC	1 cut(s)	41
EarI	CTCTTC	1 cut(s)	41
Eco130I	CCWWGG	1 cut(s)	123
Eco47I	GGWCC	2 cut(s)	105, 220
EcoRII	CCWGG	3 cut(s)	193, 222, 384
EcoT14I	CCWWGG	1 cut(s)	123
ErhI	CCWWGG	1 cut(s)	123
FaeI	CATG	3 cut(s)	61, 193, 331
FaiI	YATR	4 cut(s)	59, 191, 215, 329
FaqI	GGGAC	1 cut(s)	224
FatI	CATG	3 cut(s)	57, 189, 327
FauI	CCCGC	1 cut(s)	261
FbaI	TGATCA	1 cut(s)	249
Fnu4HI	GCNGC	6 cut(s)	50, 135, 256, 344, 419, 422
FokI	GGATG	2 cut(s)	316, 401
Fsp4HI	GCNGC	6 cut(s)	50, 135, 256, 344, 419, 422
GluI	GCNGC	6 cut(s)	50, 135, 256, 344, 419, 422
HaeIII	GGCC	1 cut(s)	134
HapII	CCGG	5 cut(s)	18, 103, 207, 347, 428
HgaI	GACGC	3 cut(s)	83, 128, 148
Hin1I	GRCGYC	5 cut(s)	63, 75, 120, 140, 150
Hin1II	CATG	3 cut(s)	61, 193, 331
HinfI	GANTC	1 cut(s)	12
HpaII	CCGG	5 cut(s)	18, 103, 207, 347, 428
Hpy166II	GTNNAC	1 cut(s)	187
Hpy188I	TCNGA	3 cut(s)	11, 249, 399
Hpy188III	TCNNGA	2 cut(s)	328, 460
Hpy8I	GTNNAC	1 cut(s)	187
Hpy99I	CGWCG	6 cut(s)	68, 74, 77, 122, 142, 152
HpyAV	CCTTC	2 cut(s)	274, 278
HpyCH4III	ACNGT	2 cut(s)	403, 409
HpyCH4IV	ACGT	5 cut(s)	63, 111, 150, 174, 297
HpyCH4V	TGCA	1 cut(s)	49
HpyF10VI	GCNNNNNNNGC	6 cut(s)	74, 134, 143, 374, 430, 439
HpySE526I	ACGT	5 cut(s)	63, 111, 150, 174, 297
Hsp92I	GRCGYC	5 cut(s)	63, 75, 120, 140, 150
Hsp92II	CATG	3 cut(s)	61, 193, 331
Ksp22I	TGATCA	1 cut(s)	249
Kzo9I	GATC	2 cut(s)	249, 462
LmnI	GCTCC	1 cut(s)	430
Lsp1109I	GCAGC	3 cut(s)	61, 330, 405
LweI	GCATC	2 cut(s)	16, 355
MaeII	ACGT	5 cut(s)	63, 111, 150, 174, 297
MaeIII	GTNAC	1 cut(s)	403
MalI	GATC	2 cut(s)	251, 464
MboI	GATC	2 cut(s)	249, 462
MboII	GAAGA	2 cut(s)	28, 457
MnlI	CCTC	9 cut(s)	223, 255, 265, 268, 294, 303, 306, 324, 448
MroXI	GAANNNNTTC	1 cut(s)	86
MseI	TTAA	1 cut(s)	291
MspA1I	CMGCKG	1 cut(s)	255
MspI	CCGG	5 cut(s)	18, 103, 207, 347, 428
MspR9I	CCNGG	6 cut(s)	18, 103, 195, 208, 224, 386
Mva1269I	GAATGC	1 cut(s)	358
MvaI	CCWGG	3 cut(s)	195, 224, 386
MvnI	CGCG	2 cut(s)	117, 137
MwoI	GCNNNNNNNGC	6 cut(s)	74, 134, 143, 374, 430, 439
NciI	CCSGG	3 cut(s)	18, 103, 208
NdeII	GATC	2 cut(s)	249, 462
NlaIII	CATG	3 cut(s)	61, 193, 331
NlaIV	GGNNCC	1 cut(s)	432
NmeAIII	GCCGAG	1 cut(s)	103
NmuCI	GTSAC	1 cut(s)	403
NspI	RCATGY	1 cut(s)	193
PagI	TCATGA	1 cut(s)	327
PcsI	WCGNNNNNNNCGW	1 cut(s)	69
PctI	GAATGC	1 cut(s)	358
PdmI	GAANNNNTTC	1 cut(s)	86
PfeI	GAWTC	1 cut(s)	12
PkrI	GCNGC	6 cut(s)	51, 136, 257, 345, 420, 423
Ppu21I	YACGTR	2 cut(s)	175, 298
PshAI	GACNNNNGTC	1 cut(s)	110
Psp6I	CCWGG	3 cut(s)	193, 222, 384
PspGI	CCWGG	3 cut(s)	193, 222, 384
PspN4I	GGNNCC	1 cut(s)	432
PspPI	GGNCC	2 cut(s)	105, 220
PstI	CTGCAG	1 cut(s)	51
RsaI	GTAC	3 cut(s)	161, 243, 296
RsaNI	GTAC	3 cut(s)	160, 242, 295
SaqAI	TTAA	1 cut(s)	291
SatI	GCNGC	6 cut(s)	50, 135, 256, 344, 419, 422
Sau3AI	GATC	2 cut(s)	249, 462
Sau96I	GGNCC	2 cut(s)	105, 220
ScrFI	CCNGG	6 cut(s)	18, 103, 195, 208, 224, 386
SfaNI	GCATC	2 cut(s)	16, 355
SfcI	CTRYAG	1 cut(s)	47
SinI	GGWCC	2 cut(s)	105, 220
SsiI	CCGC	5 cut(s)	115, 135, 255, 268, 422
StyD4I	CCNGG	6 cut(s)	16, 101, 193, 206, 222, 384
StyI	CCWWGG	1 cut(s)	123
TaaI	ACNGT	2 cut(s)	403, 409
TaiI	ACGT	5 cut(s)	66, 114, 153, 177, 300
TaqI	TCGA	1 cut(s)	453
TatI	WGTACW	1 cut(s)	241
TauI	GCSGC	3 cut(s)	137, 258, 424
TfiI	GAWTC	1 cut(s)	12
Tru1I	TTAA	1 cut(s)	291
Tru9I	TTAA	1 cut(s)	291
TscAI	CASTG	1 cut(s)	51
TseFI	GTSAC	1 cut(s)	403
TseI	GCWGC	3 cut(s)	49, 343, 418
Tsp45I	GTSAC	1 cut(s)	403
TspDTI	ATGAA	1 cut(s)	316
TspRI	CASTG	1 cut(s)	51
VpaK11BI	GGWCC	2 cut(s)	105, 220
XceI	RCATGY	1 cut(s)	193
XmnI	GAANNNNTTC	1 cut(s)	86
ZraI	GACGTC	2 cut(s)	64, 151

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.