Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr3

Orthogroup ID

OG0001449

Physical Location & Seq

Genomic Coordinates Forward (+)

1380936 .. 1381406

Gene Structure 471 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000010405

Sequence Viewer

CDS Protein Promoter (2k)

Length: 471 bp

ATGGATTTCAGAATCATGGGTCTGGATGCTCCAATCTTAACGGCACTGCAGCACCTGGCGGACCTCCCGGAGGAGACCGAGAAGACCTTCAACGCCCCGACCCGGACCTACGTCCGCGACGCCAAGGCCATGGCTGCCACTCCGGCCGACGTGAAGGAGTTACCCAATTCCTTTGTCTTCGTCATCGACATGCCGGGACTCAAGTCAGGGGACATCAAGGTGCAGGTGGAGGATGACAACGTGCTTCAGATCAGCGGCGAGAGGAAGAGGGAGGACGAGAAAGAGGGGGCTAAGTATGTGAGGATGGAGAGGAGGGTCGGTAAGTTTATGAGGAAGTTTGTGCTGCCTGAGAATGCTAATGCTGATGCCATTTCTGCTGTTTGCCAAGATGGGGTTCTGACTGTGACTGTGGAGAAGCTGCCACCTCCTCAGCCGAAGAAGCCCAAGACTATTGAGGTCAAGATTGGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006950 GO:0008150 GO:0009266 GO:0009408 GO:0009628 GO:0044424 GO:0044464 GO:0050896

KEGG Pathways

Metabolic & Signaling

ko04141 map04141

Pfam Domains

Protein Families

HSP20

Protein Analysis

157

Amino Acids

17.37

Weight (kDa)

5.94

Isoelectric Point (pI)

41.36

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
HSP20	PF00011	50 - 154	2.7e-31	Hsp20/alpha crystallin family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001449)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G12020 AT5G12030
fragaria_vesca	FvH4_2g31371
malus_domestica	MD00G1181700.v1.1 MD08G1068000.v1.1 MD08G1068200.v1.1 MD08G1068300.v1.1 MD08G1068500.v1.1 MD08G1068700.v1.1 MD08G1068800.v1.1 MD15G1053500.v1.1 MD15G1053600.v1.1 MD15G1053800.v1.1
prunus_persica	Prupe.1G407100_v2.0.a1 Prupe.1G407200_v2.0.a1 Prupe.1G407300_v2.0.a1
pyrus_communis	pycom08g05660 pycom08g05670
rosa_chinensis	RchiOBHm_Chr6g0311451 RchiOBHm_Chr6g0311461 RchiOBHm_Chr6g0311471
rosa_laevigata	RLG00000010403 RLG00000010404 RLG00000010405
rosa_multiflora	Rmu_co8421495.1_g000001 Rmu_sc0006915.1_g000010 Rmu_sc0006915.1_g000011 Rmu_sc0006915.1_g000012 Rmu_sc0013619.1_g000003 Rmu_sc0013619.1_g000004 Rmu_sc0013619.1_g000006 Rmu_sc0015790.1_g000003 Rmu_sc0015790.1_g000004
rosa_roxburghii	Rroxscaffold_7G00157590 Rroxscaffold_7G00157600
rosa_rugosa	Rorug06G0389100 Rorug06G0389100 Rorug06G0389200
rosa_samantha	Rh2AG205100 Rh2BG216900 Rh2DG211400 Rh6AG503500 Rh6AG503700 Rh6BG514200 Rh6BG514300 Rh6CG520000 Rh6CG520100 Rh6DG506100
rosa_wichuraiana	Rw2G016340 Rw6G043850 Rw6G043860 Rw6G043870

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	214
Acc36I	ACCTGC	1 cut(s)	214
AccII	CGCG	1 cut(s)	117
AciI	CCGC	3 cut(s)	59, 115, 255
AcoI	YGGCCR	1 cut(s)	144
AcuI	CTGAAG	1 cut(s)	230
AcyI	GRCGYC	1 cut(s)	120
AfiI	CCNNNNNNNGG	3 cut(s)	70, 102, 391
AgsI	TTSAA	1 cut(s)	91
AjiI	CACGTC	1 cut(s)	151
AjnI	CCWGG	1 cut(s)	54
AjuI	GAANNNNNNNTTGG	2 cut(s)	378, 410
AluBI	AGCT	1 cut(s)	418
AluI	AGCT	1 cut(s)	418
Alw26I	GTCTC	1 cut(s)	68
AlwNI	CAGNNNCTG	1 cut(s)	55
AoxI	GGCC	2 cut(s)	126, 144
ApeKI	GCWGC	4 cut(s)	49, 134, 343, 418
Asp700I	GAANNNNTTC	1 cut(s)	86
AspS9I	GGNCC	2 cut(s)	61, 105
AsuC2I	CCSGG	3 cut(s)	68, 103, 195
AvaII	GGWCC	2 cut(s)	61, 105
BbsI	GAAGAC	2 cut(s)	89, 169
BbvCI	CCTCAGC	1 cut(s)	429
BbvI	GCAGC	4 cut(s)	61, 121, 330, 405
BccI	CCATC	2 cut(s)	298, 383
BceAI	ACGGC	1 cut(s)	57
BciT130I	CCWGG	1 cut(s)	56
BcnI	CCSGG	3 cut(s)	68, 103, 195
BcoDI	GTCTC	1 cut(s)	68
BfmI	CTRYAG	1 cut(s)	47
BfuAI	ACCTGC	1 cut(s)	214
BglI	GCCNNNNNGGC	1 cut(s)	143
BisI	GCNGC	5 cut(s)	50, 135, 256, 344, 419
BlsI	GCNGC	5 cut(s)	51, 136, 257, 345, 420
Bme1390I	CCNGG	4 cut(s)	56, 68, 103, 195
Bme18I	GGWCC	2 cut(s)	61, 105
BmgBI	CACGTC	1 cut(s)	151
BmgT120I	GGNCC	2 cut(s)	61, 105
BmrFI	CCNGG	4 cut(s)	56, 68, 103, 195
BmsI	GCATC	2 cut(s)	16, 355
BoxI	GACNNNNGTC	2 cut(s)	110, 202
BpiI	GAAGAC	2 cut(s)	89, 169
Bpu10I	CCTNAGC	1 cut(s)	429
BpuEI	CTTGAG	1 cut(s)	185
BpuMI	CCSGG	3 cut(s)	68, 103, 195
BsaHI	GRCGYC	1 cut(s)	120
BsaI	GGTCTC	1 cut(s)	68
BsaJI	CCNNGG	2 cut(s)	123, 129
BsaXI	ACNNNNNCTCC	2 cut(s)	304, 334
Bsc4I	CCNNNNNNNGG	3 cut(s)	70, 102, 391
BseBI	CCWGG	1 cut(s)	56
BseDI	CCNNGG	2 cut(s)	123, 129
BseGI	GGATG	3 cut(s)	31, 238, 309
BseLI	CCNNNNNNNGG	3 cut(s)	70, 102, 391
BseMII	CTCAG	2 cut(s)	339, 443
BseRI	GAGGAG	3 cut(s)	86, 325, 417
BseX3I	CGGCCG	1 cut(s)	144
BseXI	GCAGC	4 cut(s)	61, 121, 330, 405
BsgI	GTGCAG	1 cut(s)	242
Bsh1236I	CGCG	1 cut(s)	117
Bsh1285I	CGRYCG	1 cut(s)	147
BshFI	GGCC	2 cut(s)	128, 146
BsiEI	CGRYCG	1 cut(s)	147
BsiSI	CCGG	4 cut(s)	68, 103, 143, 194
BslFI	GGGAC	2 cut(s)	210, 224
BslI	CCNNNNNNNGG	3 cut(s)	70, 102, 391
BsmAI	GTCTC	1 cut(s)	68
BsmFI	GGGAC	2 cut(s)	210, 224
BsmI	GAATGC	1 cut(s)	358
BsnI	GGCC	2 cut(s)	128, 146
Bso31I	GGTCTC	1 cut(s)	68
Bsp143I	GATC	1 cut(s)	249
Bsp19I	CCATGG	1 cut(s)	129
BspACI	CCGC	3 cut(s)	59, 115, 255
BspANI	GGCC	2 cut(s)	128, 146
BspCNI	CTCAG	2 cut(s)	340, 442
BspFNI	CGCG	1 cut(s)	117
BspMAI	CTGCAG	1 cut(s)	51
BspMI	ACCTGC	1 cut(s)	214
BspTNI	GGTCTC	1 cut(s)	68
BssECI	CCNNGG	2 cut(s)	123, 129
BssMI	GATC	1 cut(s)	249
BssNI	GRCGYC	1 cut(s)	120
BssT1I	CCWWGG	2 cut(s)	123, 129
Bst2UI	CCWGG	1 cut(s)	56
Bst4CI	ACNGT	2 cut(s)	403, 409
Bst6I	CTCTTC	1 cut(s)	260
BstACI	GRCGYC	1 cut(s)	120
BstDEI	CTNAG	3 cut(s)	291, 348, 429
BstDSI	CCRYGG	1 cut(s)	129
BstENI	CCTNNNNNAGG	1 cut(s)	68
BstF5I	GGATG	3 cut(s)	31, 238, 309
BstFNI	CGCG	1 cut(s)	117
BstKTI	GATC	1 cut(s)	252
BstMAI	GTCTC	1 cut(s)	68
BstMBI	GATC	1 cut(s)	249
BstMCI	CGRYCG	1 cut(s)	147
BstMWI	GCNNNNNNNGC	4 cut(s)	134, 143, 374, 439
BstNI	CCWGG	1 cut(s)	56
BstNSI	RCATGY	1 cut(s)	193
BstPAI	GACNNNNGTC	2 cut(s)	110, 202
BstSCI	CCNGG	4 cut(s)	54, 66, 101, 193
BstSFI	CTRYAG	1 cut(s)	47
BstUI	CGCG	1 cut(s)	117
BstV1I	GCAGC	4 cut(s)	61, 121, 330, 405
BstV2I	GAAGAC	2 cut(s)	89, 169
BstXI	CCANNNNNNTGG	1 cut(s)	130
BstZI	CGGCCG	1 cut(s)	144
BsuRI	GGCC	2 cut(s)	128, 146
BtgI	CCRYGG	1 cut(s)	129
BtrI	CACGTC	1 cut(s)	151
BtsCI	GGATG	3 cut(s)	31, 238, 309
BtsI	GCAGTG	1 cut(s)	44
BtsIMutI	CAGTG	1 cut(s)	44
BveI	ACCTGC	1 cut(s)	214
CaiI	CAGNNNCTG	1 cut(s)	55
Cfr13I	GGNCC	2 cut(s)	61, 105
CseI	GACGC	1 cut(s)	128
CviAII	CATG	3 cut(s)	16, 130, 190
CviJI	RGCY	7 cut(s)	128, 134, 146, 290, 418, 433, 442
CviKI_1	RGCY	7 cut(s)	128, 134, 146, 290, 418, 433, 442
DdeI	CTNAG	3 cut(s)	291, 348, 429
DpnI	GATC	1 cut(s)	251
DpnII	GATC	1 cut(s)	249
EaeI	YGGCCR	1 cut(s)	144
EagI	CGGCCG	1 cut(s)	144
Eam1104I	CTCTTC	1 cut(s)	260
EarI	CTCTTC	1 cut(s)	260
EciI	GGCGGA	1 cut(s)	74
EclXI	CGGCCG	1 cut(s)	144
Eco130I	CCWWGG	2 cut(s)	123, 129
Eco31I	GGTCTC	1 cut(s)	68
Eco47I	GGWCC	2 cut(s)	61, 105
Eco52I	CGGCCG	1 cut(s)	144
Eco57I	CTGAAG	1 cut(s)	230
EcoNI	CCTNNNNNAGG	1 cut(s)	68
EcoRII	CCWGG	1 cut(s)	54
EcoT14I	CCWWGG	2 cut(s)	123, 129
ErhI	CCWWGG	2 cut(s)	123, 129
FaeI	CATG	3 cut(s)	19, 133, 193
FaiI	YATR	5 cut(s)	17, 131, 191, 297, 329
FaqI	GGGAC	2 cut(s)	210, 224
FatI	CATG	3 cut(s)	15, 129, 189
Fnu4HI	GCNGC	5 cut(s)	50, 135, 256, 344, 419
FokI	GGATG	3 cut(s)	38, 245, 316
Fsp4HI	GCNGC	5 cut(s)	50, 135, 256, 344, 419
GluI	GCNGC	5 cut(s)	50, 135, 256, 344, 419
HaeIII	GGCC	2 cut(s)	128, 146
HapII	CCGG	4 cut(s)	68, 103, 143, 194
HgaI	GACGC	1 cut(s)	128
Hin1I	GRCGYC	1 cut(s)	120
Hin1II	CATG	3 cut(s)	19, 133, 193
HinfI	GANTC	2 cut(s)	12, 198
HpaII	CCGG	4 cut(s)	68, 103, 143, 194
Hpy188I	TCNGA	3 cut(s)	11, 249, 399
Hpy188III	TCNNGA	2 cut(s)	23, 460
Hpy99I	CGWCG	2 cut(s)	122, 152
HpyAV	CCTTC	2 cut(s)	97, 148
HpyCH4III	ACNGT	2 cut(s)	403, 409
HpyCH4IV	ACGT	3 cut(s)	111, 150, 240
HpyCH4V	TGCA	2 cut(s)	49, 223
HpyF10VI	GCNNNNNNNGC	4 cut(s)	134, 143, 374, 439
HpyF3I	CTNAG	3 cut(s)	291, 348, 429
HpySE526I	ACGT	3 cut(s)	111, 150, 240
Hsp92I	GRCGYC	1 cut(s)	120
Hsp92II	CATG	3 cut(s)	19, 133, 193
Kzo9I	GATC	1 cut(s)	249
LmnI	GCTCC	1 cut(s)	34
Lsp1109I	GCAGC	4 cut(s)	61, 121, 330, 405
LweI	GCATC	2 cut(s)	16, 355
MaeII	ACGT	3 cut(s)	111, 150, 240
MaeIII	GTNAC	2 cut(s)	159, 403
MalI	GATC	1 cut(s)	251
MboI	GATC	1 cut(s)	249
MboII	GAAGA	4 cut(s)	94, 169, 277, 448
MluCI	AATT	1 cut(s)	166
MlyI	GAGTC	1 cut(s)	192
MroXI	GAANNNNTTC	1 cut(s)	86
MseI	TTAA	2 cut(s)	38, 469
MslI	CAYNNNNRTG	2 cut(s)	188, 218
MspA1I	CMGCKG	1 cut(s)	255
MspI	CCGG	4 cut(s)	68, 103, 143, 194
MspR9I	CCNGG	4 cut(s)	56, 68, 103, 195
Mva1269I	GAATGC	1 cut(s)	358
MvaI	CCWGG	1 cut(s)	56
MvnI	CGCG	1 cut(s)	117
MwoI	GCNNNNNNNGC	4 cut(s)	134, 143, 374, 439
NciI	CCSGG	3 cut(s)	68, 103, 195
NcoI	CCATGG	1 cut(s)	129
NdeII	GATC	1 cut(s)	249
NlaIII	CATG	3 cut(s)	19, 133, 193
NmuCI	GTSAC	1 cut(s)	403
NspI	RCATGY	1 cut(s)	193
PaqCI	CACCTGC	1 cut(s)	214
PctI	GAATGC	1 cut(s)	358
PdmI	GAANNNNTTC	1 cut(s)	86
PfeI	GAWTC	1 cut(s)	12
PfoI	TCCNGGA	1 cut(s)	66
PkrI	GCNGC	5 cut(s)	51, 136, 257, 345, 420
PleI	GAGTC	1 cut(s)	192
PpsI	GAGTC	1 cut(s)	192
PshAI	GACNNNNGTC	2 cut(s)	110, 202
Psp6I	CCWGG	1 cut(s)	54
PspGI	CCWGG	1 cut(s)	54
PspPI	GGNCC	2 cut(s)	61, 105
PstI	CTGCAG	1 cut(s)	51
PstNI	CAGNNNCTG	1 cut(s)	55
RseI	CAYNNNNRTG	2 cut(s)	188, 218
SaqAI	TTAA	2 cut(s)	38, 469
SatI	GCNGC	5 cut(s)	50, 135, 256, 344, 419
Sau3AI	GATC	1 cut(s)	249
Sau96I	GGNCC	2 cut(s)	61, 105
SchI	GAGTC	1 cut(s)	192
ScrFI	CCNGG	4 cut(s)	56, 68, 103, 195
SfaNI	GCATC	2 cut(s)	16, 355
SfcI	CTRYAG	1 cut(s)	47
SinI	GGWCC	2 cut(s)	61, 105
SmiMI	CAYNNNNRTG	2 cut(s)	188, 218
SmlI	CTYRAG	1 cut(s)	200
SmoI	CTYRAG	1 cut(s)	200
Sse9I	AATT	1 cut(s)	166
SsiI	CCGC	3 cut(s)	59, 115, 255
StyD4I	CCNGG	4 cut(s)	54, 66, 101, 193
StyI	CCWWGG	2 cut(s)	123, 129
TaaI	ACNGT	2 cut(s)	403, 409
TaiI	ACGT	3 cut(s)	114, 153, 243
TaqI	TCGA	1 cut(s)	186
TaqII	GACCGA	1 cut(s)	92
TasI	AATT	1 cut(s)	166
TauI	GCSGC	1 cut(s)	258
TfiI	GAWTC	1 cut(s)	12
Tru1I	TTAA	2 cut(s)	38, 469
Tru9I	TTAA	2 cut(s)	38, 469
TscAI	CASTG	1 cut(s)	51
TseFI	GTSAC	1 cut(s)	403
TseI	GCWGC	4 cut(s)	49, 134, 343, 418
Tsp45I	GTSAC	1 cut(s)	403
TspRI	CASTG	1 cut(s)	51
VpaK11BI	GGWCC	2 cut(s)	61, 105
XagI	CCTNNNNNAGG	1 cut(s)	68
XceI	RCATGY	1 cut(s)	193
XmnI	GAANNNNTTC	1 cut(s)	86

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.