Prupe.1G407200_v2.0.a1

kDa class II heat shock protein-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
OG0001449
Physical Location & Seq
Forward (+)
35722929 .. 35723979
1051 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.1G407200.1

Sequence Viewer

Length: 645 bp
ATGGAGGTGAGCCTGAGAAACATGGGGTTCGAGCCAAACCTGCTCGAGACTCTGCACGACCTACTGGACTTCTCCGACGAGCAGAACCAGTCGAGCCACCATGCGCCTTCGCGCCAGTACGTGCGCGAGGCCAAGGCCATGGCCGCCACGCCAGCCGACATCAAGGAGGCTCAAAACGCCTATATTTTTGTGGTGGACGTGCCCGGGCTGAGGCCGGATATGGTCAACGTTCAAGTTGAGGACGACAACGTGCTGGTGGTGAGTGGGGAGAGGAGGAGAGAAAAGGAGAAGGATCAGGGGATTAAGTATTTGAGGATGGAGAGGAGGCTTGGCAAGTACCTCAAGAAGTTTGTGCTGCCTGAAAATGCTGATATTGAGAAGATCTCTGCCGAGTGTCAGGACGGGGTGTTGACTGTGAGTGTGGCGAAGAAGCCGCCGCCTGAGCCTAAGAAGCCCAAGACTATTCAGGTCCAAATAAGCAGCGGCCAAGGCAGCGGTCAGGGCAAACAAATCGGCCAAGGCGGTGGTCAGGGCGGCGAAGGAGGACATGGAGGTGATCAAGGCGGCGGGCAGGGAGGCCAAGGTGGTGGACAAGGGGGCCAACATGGCAGTCAAGGTGGACAAGGTGGGGACCAAGACAGGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04141 map04141
Pfam Domains
Protein Families
HSP20

Protein Analysis

215

Amino Acids

22.9

Weight (kDa)

5.78

Isoelectric Point (pI)

45.85

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 48
AccII CGCG 2 cut(s) 112, 126
AciI CCGC 9 cut(s) 144, 434, 437, 483, 495, 522, 534, 564, 567
AclI AACGTT 1 cut(s) 228
AclWI GGATC 1 cut(s) 300
AcoI YGGCCR 3 cut(s) 141, 484, 514
AfaI GTAC 2 cut(s) 119, 338
AfiI CCNNNNNNNGG 1 cut(s) 210
AgsI TTSAA 1 cut(s) 233
AjiI CACGTC 1 cut(s) 199
Alw26I GTCTC 1 cut(s) 41
AlwI GGATC 1 cut(s) 300
Ama87I CYCGRG 2 cut(s) 44, 203
AoxI GGCC 8 cut(s) 129, 135, 141, 212, 484, 514, 577, 598
ApeKI GCWGC 3 cut(s) 355, 480, 492
AspLEI GCGC 3 cut(s) 106, 114, 126
AspS9I GGNCC 3 cut(s) 469, 598, 631
AsuC2I CCSGG 2 cut(s) 204, 205
AsuHPI GGTGA 3 cut(s) 19, 271, 566
AvaI CYCGRG 2 cut(s) 44, 203
AvaII GGWCC 2 cut(s) 469, 631
BaeGI GKGCMC 1 cut(s) 204
BbvCI CCTCAGC 1 cut(s) 209
BbvI GCAGC 3 cut(s) 342, 492, 504
BccI CCATC 1 cut(s) 310
BcgI CGANNNNNNTGC 2 cut(s) 493, 527
BclI TGATCA 1 cut(s) 556
BcnI CCSGG 2 cut(s) 204, 205
BcoDI GTCTC 1 cut(s) 41
BfuAI ACCTGC 1 cut(s) 48
BglI GCCNNNNNGGC 1 cut(s) 606
BglII AGATCT 1 cut(s) 381
BisI GCNGC 9 cut(s) 144, 356, 434, 437, 481, 484, 493, 535, 565
BlsI GCNGC 9 cut(s) 145, 357, 435, 438, 482, 485, 494, 536, 566
Bme1390I CCNGG 2 cut(s) 204, 205
Bme18I GGWCC 2 cut(s) 469, 631
BmeT110I CYCGRG 2 cut(s) 44, 203
BmgBI CACGTC 1 cut(s) 199
BmgT120I GGNCC 3 cut(s) 469, 598, 631
BmiI GGNNCC 2 cut(s) 599, 632
BmrFI CCNGG 2 cut(s) 204, 205
BplI GAGNNNNNCTC 2 cut(s) 368, 400
Bpu10I CCTNAGC 2 cut(s) 209, 441
BpuEI CTTGAG 1 cut(s) 326
BpuMI CCSGG 2 cut(s) 204, 205
BsaAI YACGTR 1 cut(s) 121
BsaJI CCNNGG 6 cut(s) 132, 138, 203, 487, 517, 580
Bsc4I CCNNNNNNNGG 1 cut(s) 210
Bse1I ACTGG 3 cut(s) 69, 88, 115
BseDI CCNNGG 6 cut(s) 132, 138, 203, 487, 517, 580
BseGI GGATG 1 cut(s) 321
BseLI CCNNNNNNNGG 1 cut(s) 210
BseMII CTCAG 3 cut(s) 5, 200, 432
BseNI ACTGG 3 cut(s) 69, 88, 115
BseRI GAGGAG 3 cut(s) 286, 289, 337
BseSI GKGCMC 1 cut(s) 204
BseXI GCAGC 3 cut(s) 342, 492, 504
BsgI GTGCAG 1 cut(s) 38
Bsh1236I CGCG 2 cut(s) 112, 126
BshFI GGCC 8 cut(s) 131, 137, 143, 214, 486, 516, 579, 600
BsiHKCI CYCGRG 2 cut(s) 44, 203
BsiSI CCGG 2 cut(s) 204, 215
BslI CCNNNNNNNGG 1 cut(s) 210
BsmAI GTCTC 1 cut(s) 41
BsnI GGCC 8 cut(s) 131, 137, 143, 214, 486, 516, 579, 600
BsoBI CYCGRG 2 cut(s) 44, 203
Bsp1286I GDGCHC 1 cut(s) 204
Bsp143I GATC 3 cut(s) 292, 381, 556
Bsp19I CCATGG 1 cut(s) 138
BspACI CCGC 9 cut(s) 144, 434, 437, 483, 495, 522, 534, 564, 567
BspANI GGCC 8 cut(s) 131, 137, 143, 214, 486, 516, 579, 600
BspCNI CTCAG 3 cut(s) 6, 201, 433
BspFNI CGCG 2 cut(s) 112, 126
BspLI GGNNCC 2 cut(s) 599, 632
BspMI ACCTGC 1 cut(s) 48
BspPI GGATC 1 cut(s) 300
BsrI ACTGG 3 cut(s) 69, 88, 115
BssECI CCNNGG 6 cut(s) 132, 138, 203, 487, 517, 580
BssMI GATC 3 cut(s) 292, 381, 556
BssT1I CCWWGG 5 cut(s) 132, 138, 487, 517, 580
Bst4CI ACNGT 1 cut(s) 415
BstBAI YACGTR 1 cut(s) 121
BstC8I GCNNGC 2 cut(s) 153, 569
BstDEI CTNAG 4 cut(s) 14, 209, 441, 447
BstDSI CCRYGG 1 cut(s) 138
BstF5I GGATG 1 cut(s) 321
BstFNI CGCG 2 cut(s) 112, 126
BstHHI GCGC 3 cut(s) 106, 114, 126
BstKTI GATC 3 cut(s) 295, 384, 559
BstMAI GTCTC 1 cut(s) 41
BstMBI GATC 3 cut(s) 292, 381, 556
BstSCI CCNGG 2 cut(s) 202, 203
BstSLI GKGCMC 1 cut(s) 204
BstUI CGCG 2 cut(s) 112, 126
BstV1I GCAGC 3 cut(s) 342, 492, 504
BstX2I RGATCY 1 cut(s) 381
BstXI CCANNNNNNTGG 3 cut(s) 139, 524, 587
BstYI RGATCY 1 cut(s) 381
BsuRI GGCC 8 cut(s) 131, 137, 143, 214, 486, 516, 579, 600
BtgI CCRYGG 1 cut(s) 138
BtrI CACGTC 1 cut(s) 199
BtsCI GGATG 1 cut(s) 321
BveI ACCTGC 1 cut(s) 48
Cac8I GCNNGC 2 cut(s) 153, 569
CfoI GCGC 3 cut(s) 106, 114, 126
Cfr13I GGNCC 3 cut(s) 469, 598, 631
Cfr9I CCCGGG 1 cut(s) 203
Csp6I GTAC 2 cut(s) 118, 337
CviAII CATG 5 cut(s) 22, 101, 139, 548, 605
CviQI GTAC 2 cut(s) 118, 337
DdeI CTNAG 4 cut(s) 14, 209, 441, 447
DpnI GATC 3 cut(s) 294, 383, 558
DpnII GATC 3 cut(s) 292, 381, 556
EaeI YGGCCR 3 cut(s) 141, 484, 514
Eco130I CCWWGG 5 cut(s) 132, 138, 487, 517, 580
Eco47I GGWCC 2 cut(s) 469, 631
Eco88I CYCGRG 2 cut(s) 44, 203
EcoT14I CCWWGG 5 cut(s) 132, 138, 487, 517, 580
ErhI CCWWGG 5 cut(s) 132, 138, 487, 517, 580
FaeI CATG 5 cut(s) 25, 104, 142, 551, 608
FaiI YATR 7 cut(s) 23, 102, 140, 183, 221, 549, 606
FatI CATG 5 cut(s) 21, 100, 138, 547, 604
FauI CCCGC 1 cut(s) 560
FbaI TGATCA 1 cut(s) 556
Fnu4HI GCNGC 9 cut(s) 144, 356, 434, 437, 481, 484, 493, 535, 565
FokI GGATG 1 cut(s) 328
Fsp4HI GCNGC 9 cut(s) 144, 356, 434, 437, 481, 484, 493, 535, 565
GlaI GCGC 3 cut(s) 105, 113, 125
GluI GCNGC 9 cut(s) 144, 356, 434, 437, 481, 484, 493, 535, 565
HaeIII GGCC 8 cut(s) 131, 137, 143, 214, 486, 516, 579, 600
HapII CCGG 2 cut(s) 204, 215
HhaI GCGC 3 cut(s) 106, 114, 126
Hin1II CATG 5 cut(s) 25, 104, 142, 551, 608
Hin6I GCGC 3 cut(s) 104, 112, 124
HinP1I GCGC 3 cut(s) 104, 112, 124
HincII GTYRAC 2 cut(s) 226, 411
HindII GTYRAC 2 cut(s) 226, 411
HinfI GANTC 1 cut(s) 49
HpaII CCGG 2 cut(s) 204, 215
HphI GGTGA 3 cut(s) 19, 271, 566
Hpy166II GTNNAC 5 cut(s) 196, 226, 411, 590, 620
Hpy188I TCNGA 1 cut(s) 76
Hpy188III TCNNGA 3 cut(s) 46, 343, 398
Hpy8I GTNNAC 5 cut(s) 196, 226, 411, 590, 620
Hpy99I CGWCG 1 cut(s) 80
HpyAV CCTTC 3 cut(s) 117, 283, 533
HpyCH4III ACNGT 1 cut(s) 415
HpyCH4IV ACGT 4 cut(s) 120, 198, 228, 249
HpyCH4V TGCA 1 cut(s) 55
HpyF3I CTNAG 4 cut(s) 14, 209, 441, 447
HpySE526I ACGT 4 cut(s) 120, 198, 228, 249
Hsp92II CATG 5 cut(s) 25, 104, 142, 551, 608
HspAI GCGC 3 cut(s) 104, 112, 124
Ksp22I TGATCA 1 cut(s) 556
Kzo9I GATC 3 cut(s) 292, 381, 556
Lsp1109I GCAGC 3 cut(s) 342, 492, 504
MaeII ACGT 4 cut(s) 120, 198, 228, 249
MalI GATC 3 cut(s) 294, 383, 558
MboI GATC 3 cut(s) 292, 381, 556
MboII GAAGA 2 cut(s) 391, 439
MflI RGATCY 1 cut(s) 381
MhlI GDGCHC 1 cut(s) 204
MlyI GAGTC 1 cut(s) 43
MmeI TCCRAC 1 cut(s) 99
MseI TTAA 1 cut(s) 303
MslI CAYNNNNRTG 1 cut(s) 552
MspA1I CMGCKG 2 cut(s) 483, 495
MspI CCGG 2 cut(s) 204, 215
MspR9I CCNGG 2 cut(s) 204, 205
MvnI CGCG 2 cut(s) 112, 126
NciI CCSGG 2 cut(s) 204, 205
NcoI CCATGG 1 cut(s) 138
NdeII GATC 3 cut(s) 292, 381, 556
NlaIII CATG 5 cut(s) 25, 104, 142, 551, 608
NlaIV GGNNCC 2 cut(s) 599, 632
NmeAIII GCCGAG 1 cut(s) 415
PaeR7I CTCGAG 1 cut(s) 44
PkrI GCNGC 9 cut(s) 145, 357, 435, 438, 482, 485, 494, 536, 566
PleI GAGTC 1 cut(s) 43
PpsI GAGTC 1 cut(s) 43
Ppu21I YACGTR 1 cut(s) 121
Psp1406I AACGTT 1 cut(s) 228
PspN4I GGNNCC 2 cut(s) 599, 632
PspPI GGNCC 3 cut(s) 469, 598, 631
PsuI RGATCY 1 cut(s) 381
RsaI GTAC 2 cut(s) 119, 338
RsaNI GTAC 2 cut(s) 118, 337
RseI CAYNNNNRTG 1 cut(s) 552
SaqAI TTAA 1 cut(s) 303
SatI GCNGC 9 cut(s) 144, 356, 434, 437, 481, 484, 493, 535, 565
Sau3AI GATC 3 cut(s) 292, 381, 556
Sau96I GGNCC 3 cut(s) 469, 598, 631
SchI GAGTC 1 cut(s) 43
ScrFI CCNGG 2 cut(s) 204, 205
SduI GDGCHC 1 cut(s) 204
Sfr274I CTCGAG 1 cut(s) 44
SinI GGWCC 2 cut(s) 469, 631
SlaI CTCGAG 1 cut(s) 44
SmaI CCCGGG 1 cut(s) 205
SmiMI CAYNNNNRTG 1 cut(s) 552
SmlI CTYRAG 2 cut(s) 44, 341
SmoI CTYRAG 2 cut(s) 44, 341
SrfI GCCCGGGC 1 cut(s) 205
SsiI CCGC 9 cut(s) 144, 434, 437, 483, 495, 522, 534, 564, 567
StyD4I CCNGG 2 cut(s) 202, 203
StyI CCWWGG 5 cut(s) 132, 138, 487, 517, 580
TaaI ACNGT 1 cut(s) 415
TaiI ACGT 4 cut(s) 123, 201, 231, 252
TaqI TCGA 3 cut(s) 30, 45, 92
TauI GCSGC 6 cut(s) 146, 436, 439, 486, 537, 567
Tru1I TTAA 1 cut(s) 303
Tru9I TTAA 1 cut(s) 303
TseI GCWGC 3 cut(s) 355, 480, 492
TspMI CCCGGG 1 cut(s) 203
VpaK11BI GGWCC 2 cut(s) 469, 631
XhoI CTCGAG 1 cut(s) 44
XmaI CCCGGG 1 cut(s) 203
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.