Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr00

Orthogroup ID

OG0001449

Physical Location & Seq

Genomic Coordinates Reverse (-)

42820094 .. 42820435

Gene Structure 342 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD00G1181700.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 342 bp

ATGGCCACCACACTTGCAGATGTGAAGGAGACTAAAGATGCCTACGTTTTCGTGGTGGATGTTCCAGGGCCGAGGCCGAATATGATTAATGTGAAGATTGAGGAAGATAACGTGCTGGTGGTGAGCGGGGAAAGGAAGAAAGAGAAGGAGAGGGATCAGGGGATCAAGTACTTGAGGATGGAGAGGAGGCTTGGGAAGTATCTCAAGAAGTTTGTGTTGCTGAACAACGTCGATATTGAGAGGATTTCGGCCGAGTGTCAGGATAGGGTGCTGACTGTGACAGTTGCGAAGAAGCTGCCGCCAGAGCAGAAGAAGCCTAAGGGCGCGTTTACTAATCCGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04141 map04141

Pfam Domains

Protein Families

HSP20

Protein Analysis

114

Amino Acids

12.93

Weight (kDa)

9.49

Isoelectric Point (pI)

30.19

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
HSP20	PF00011	7 - 107	2.2e-20	Hsp20/alpha crystallin family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0001449)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G12020 AT5G12030
fragaria_vesca	FvH4_2g31371
malus_domestica	MD00G1181700.v1.1 MD08G1068000.v1.1 MD08G1068200.v1.1 MD08G1068300.v1.1 MD08G1068500.v1.1 MD08G1068700.v1.1 MD08G1068800.v1.1 MD15G1053500.v1.1 MD15G1053600.v1.1 MD15G1053800.v1.1
prunus_persica	Prupe.1G407100_v2.0.a1 Prupe.1G407200_v2.0.a1 Prupe.1G407300_v2.0.a1
pyrus_communis	pycom08g05660 pycom08g05670
rosa_chinensis	RchiOBHm_Chr6g0311451 RchiOBHm_Chr6g0311461 RchiOBHm_Chr6g0311471
rosa_laevigata	RLG00000010403 RLG00000010404 RLG00000010405
rosa_multiflora	Rmu_co8421495.1_g000001 Rmu_sc0006915.1_g000010 Rmu_sc0006915.1_g000011 Rmu_sc0006915.1_g000012 Rmu_sc0013619.1_g000003 Rmu_sc0013619.1_g000004 Rmu_sc0013619.1_g000006 Rmu_sc0015790.1_g000003 Rmu_sc0015790.1_g000004
rosa_roxburghii	Rroxscaffold_7G00157590 Rroxscaffold_7G00157600
rosa_rugosa	Rorug06G0389100 Rorug06G0389100 Rorug06G0389200
rosa_samantha	Rh2AG205100 Rh2BG216900 Rh2DG211400 Rh6AG503500 Rh6AG503700 Rh6BG514200 Rh6BG514300 Rh6CG520000 Rh6CG520100 Rh6DG506100
rosa_wichuraiana	Rw2G016340 Rw6G043850 Rw6G043860 Rw6G043870

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	126
AccII	CGCG	1 cut(s)	326
AciI	CCGC	2 cut(s)	126, 299
AclWI	GGATC	2 cut(s)	162, 170
AcoI	YGGCCR	2 cut(s)	3, 249
AfaI	GTAC	1 cut(s)	170
AjnI	CCWGG	1 cut(s)	64
AluBI	AGCT	1 cut(s)	295
AluI	AGCT	1 cut(s)	295
Alw26I	GTCTC	1 cut(s)	23
AlwI	GGATC	2 cut(s)	162, 170
AoxI	GGCC	4 cut(s)	3, 68, 74, 249
ApeKI	GCWGC	1 cut(s)	295
AseI	ATTAAT	1 cut(s)	87
AspLEI	GCGC	1 cut(s)	326
AspS9I	GGNCC	1 cut(s)	68
AsuHPI	GGTGA	1 cut(s)	133
AxyI	CCTNAGG	1 cut(s)	318
BalI	TGGCCA	1 cut(s)	5
BbvI	GCAGC	1 cut(s)	282
BccI	CCATC	1 cut(s)	172
BcgI	CGANNNNNNTGC	2 cut(s)	277, 311
BciT130I	CCWGG	1 cut(s)	66
BcoDI	GTCTC	1 cut(s)	23
BisI	GCNGC	2 cut(s)	296, 299
BlsI	GCNGC	2 cut(s)	297, 300
BmcAI	AGTACT	1 cut(s)	170
Bme1390I	CCNGG	1 cut(s)	66
BmgT120I	GGNCC	1 cut(s)	68
BmrFI	CCNGG	1 cut(s)	66
BmsI	GCATC	1 cut(s)	28
BpuEI	CTTGAG	2 cut(s)	188, 193
BsaJI	CCNNGG	2 cut(s)	65, 71
Bse21I	CCTNAGG	1 cut(s)	318
BseBI	CCWGG	1 cut(s)	66
BseDI	CCNNGG	2 cut(s)	65, 71
BseGI	GGATG	2 cut(s)	64, 183
BseRI	GAGGAG	1 cut(s)	199
BseX3I	CGGCCG	1 cut(s)	249
BseXI	GCAGC	1 cut(s)	282
Bsh1236I	CGCG	1 cut(s)	326
Bsh1285I	CGRYCG	1 cut(s)	252
BshFI	GGCC	4 cut(s)	5, 70, 76, 251
BsiEI	CGRYCG	1 cut(s)	252
BsmAI	GTCTC	1 cut(s)	23
BsnI	GGCC	4 cut(s)	5, 70, 76, 251
Bsp143I	GATC	2 cut(s)	154, 162
BspACI	CCGC	2 cut(s)	126, 299
BspANI	GGCC	4 cut(s)	5, 70, 76, 251
BspFNI	CGCG	1 cut(s)	326
BspPI	GGATC	2 cut(s)	162, 170
BsrBI	CCGCTC	1 cut(s)	126
BssECI	CCNNGG	2 cut(s)	65, 71
BssMI	GATC	2 cut(s)	154, 162
Bst2UI	CCWGG	1 cut(s)	66
Bst4CI	ACNGT	2 cut(s)	277, 283
BstDEI	CTNAG	1 cut(s)	318
BstF5I	GGATG	2 cut(s)	64, 183
BstFNI	CGCG	1 cut(s)	326
BstHHI	GCGC	1 cut(s)	326
BstKTI	GATC	2 cut(s)	157, 165
BstMAI	GTCTC	1 cut(s)	23
BstMBI	GATC	2 cut(s)	154, 162
BstMCI	CGRYCG	1 cut(s)	252
BstMWI	GCNNNNNNNGC	2 cut(s)	304, 313
BstNI	CCWGG	1 cut(s)	66
BstSCI	CCNGG	1 cut(s)	64
BstUI	CGCG	1 cut(s)	326
BstV1I	GCAGC	1 cut(s)	282
BstZI	CGGCCG	1 cut(s)	249
Bsu36I	CCTNAGG	1 cut(s)	318
BsuRI	GGCC	4 cut(s)	5, 70, 76, 251
BtsCI	GGATG	2 cut(s)	64, 183
CfoI	GCGC	1 cut(s)	326
Cfr13I	GGNCC	1 cut(s)	68
Csp6I	GTAC	1 cut(s)	169
CspCI	CAANNNNNGTGG	1 cut(s)	30
CviJI	RGCY	7 cut(s)	5, 70, 76, 190, 251, 295, 316
CviKI_1	RGCY	7 cut(s)	5, 70, 76, 190, 251, 295, 316
CviQI	GTAC	1 cut(s)	169
DdeI	CTNAG	1 cut(s)	318
DpnI	GATC	2 cut(s)	156, 164
DpnII	GATC	2 cut(s)	154, 162
EaeI	YGGCCR	2 cut(s)	3, 249
EagI	CGGCCG	1 cut(s)	249
EclXI	CGGCCG	1 cut(s)	249
Eco52I	CGGCCG	1 cut(s)	249
Eco81I	CCTNAGG	1 cut(s)	318
EcoRII	CCWGG	1 cut(s)	64
FaiI	YATR	1 cut(s)	83
FauI	CCCGC	1 cut(s)	119
Fnu4HI	GCNGC	2 cut(s)	296, 299
FokI	GGATG	2 cut(s)	71, 190
Fsp4HI	GCNGC	2 cut(s)	296, 299
GlaI	GCGC	1 cut(s)	325
GluI	GCNGC	2 cut(s)	296, 299
HaeIII	GGCC	4 cut(s)	5, 70, 76, 251
HhaI	GCGC	1 cut(s)	326
Hin6I	GCGC	1 cut(s)	324
HinP1I	GCGC	1 cut(s)	324
HphI	GGTGA	1 cut(s)	133
Hpy166II	GTNNAC	1 cut(s)	330
Hpy188III	TCNNGA	2 cut(s)	205, 260
Hpy8I	GTNNAC	1 cut(s)	330
Hpy99I	CGWCG	1 cut(s)	233
HpyAV	CCTTC	2 cut(s)	19, 139
HpyCH4III	ACNGT	2 cut(s)	277, 283
HpyCH4IV	ACGT	3 cut(s)	45, 111, 228
HpyCH4V	TGCA	1 cut(s)	17
HpyF10VI	GCNNNNNNNGC	2 cut(s)	304, 313
HpyF3I	CTNAG	1 cut(s)	318
HpySE526I	ACGT	3 cut(s)	45, 111, 228
HspAI	GCGC	1 cut(s)	324
Kzo9I	GATC	2 cut(s)	154, 162
LpnPI	CCDG	6 cut(s)	51, 78, 101, 143, 245, 315
Lsp1109I	GCAGC	1 cut(s)	282
LweI	GCATC	1 cut(s)	28
MaeII	ACGT	3 cut(s)	45, 111, 228
MaeIII	GTNAC	1 cut(s)	277
MalI	GATC	2 cut(s)	156, 164
MbiI	CCGCTC	1 cut(s)	126
MboI	GATC	2 cut(s)	154, 162
MboII	GAAGA	5 cut(s)	106, 116, 148, 301, 322
MlsI	TGGCCA	1 cut(s)	5
MluNI	TGGCCA	1 cut(s)	5
MnlI	CCTC	7 cut(s)	66, 94, 144, 168, 177, 180, 234
Mox20I	TGGCCA	1 cut(s)	5
MscI	TGGCCA	1 cut(s)	5
MseI	TTAA	1 cut(s)	87
Msp20I	TGGCCA	1 cut(s)	5
MspR9I	CCNGG	1 cut(s)	66
MvaI	CCWGG	1 cut(s)	66
MvnI	CGCG	1 cut(s)	326
MwoI	GCNNNNNNNGC	2 cut(s)	304, 313
NdeII	GATC	2 cut(s)	154, 162
NmeAIII	GCCGAG	2 cut(s)	96, 277
NmuCI	GTSAC	1 cut(s)	277
PkrI	GCNGC	2 cut(s)	297, 300
PshBI	ATTAAT	1 cut(s)	87
Psp6I	CCWGG	1 cut(s)	64
PspGI	CCWGG	1 cut(s)	64
PspPI	GGNCC	1 cut(s)	68
RsaI	GTAC	1 cut(s)	170
RsaNI	GTAC	1 cut(s)	169
SaqAI	TTAA	1 cut(s)	87
SatI	GCNGC	2 cut(s)	296, 299
Sau3AI	GATC	2 cut(s)	154, 162
Sau96I	GGNCC	1 cut(s)	68
ScaI	AGTACT	1 cut(s)	170
ScrFI	CCNGG	1 cut(s)	66
SetI	ASST	4 cut(s)	48, 114, 231, 297
SfaNI	GCATC	1 cut(s)	28
SmlI	CTYRAG	2 cut(s)	172, 203
SmoI	CTYRAG	2 cut(s)	172, 203
SsiI	CCGC	2 cut(s)	126, 299
StyD4I	CCNGG	1 cut(s)	64
TaaI	ACNGT	2 cut(s)	277, 283
TaiI	ACGT	3 cut(s)	48, 114, 231
TaqI	TCGA	1 cut(s)	231
TatI	WGTACW	1 cut(s)	168
TauI	GCSGC	1 cut(s)	301
Tru1I	TTAA	1 cut(s)	87
Tru9I	TTAA	1 cut(s)	87
TseFI	GTSAC	1 cut(s)	277
TseI	GCWGC	1 cut(s)	295
Tsp45I	GTSAC	1 cut(s)	277
TspGWI	ACGGA	1 cut(s)	327
VspI	ATTAAT	1 cut(s)	87
ZrmI	AGTACT	1 cut(s)	170

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.