Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6B

Orthogroup ID

OG0001449

Physical Location & Seq

Genomic Coordinates Reverse (-)

70892501 .. 70893187

Gene Structure 687 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6BG514200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 687 bp

ATGCTAGAATCTCCTTACCTCTTTCCACGTGTCTCCAGAACTTTGTATAGCGCACCTACACCGCCATTAACACCACTCCTCTCCTCCACCTATAAATGCCCATATCCGCTGCTCCCAATCATCCACGAACAAAATTCCAAAGCACTCGAACACACTACAGCTCTCACAACCAAACAAGCAAACATTTCACTAACCAAGAAGAGGAGAATGGATTTCAGAATCATGGGTCTGGATGCTCCAATCATGACAGCACTGCAGCAGCTACAGCGGCTGGCGGACTTCCCTGAGGAGAACGAGAAGACCTCCAACGCCCCGACCCGGACCTACGTCCGCGACGCCAAGGCTATGGCTTCCACTCCGGCCGACGTGAAGGAGTACCCCAATTCCTACGTGTTCGTGATCGACATGCCGGGGCTCAAGTCAGGGGACATCAAGGTGCAGGTGGAGGATGACAATGTGCTTCTGATCAGCGGCGAGAGGAAGAGGGAGGACGAGAAAGAGGGGGTAAAGTATTTGAGGATGGAGAGGAGGGTTGGCAAGTTTATGAGGAAGTTTGTGCTGCCTGAGAATGCTAATGCTGATGCCATTTCTGCTGTTTGCCAAGATGGGGTTCTTACTGTGACTGTGGAGAAGGTGCCACCGCCTCAGCCGAAGACCAAGACTATTGAGGTCAAGAATATTGGTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006950 GO:0008150 GO:0009266 GO:0009408 GO:0009628 GO:0044424 GO:0044464 GO:0050896

KEGG Pathways

Metabolic & Signaling

ko04141 map04141

Pfam Domains

Protein Families

HSP20

Protein Analysis

228

Amino Acids

25.65

Weight (kDa)

9.08

Isoelectric Point (pI)

49.56

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
HSP20	PF00011	122 - 225	8.2e-30	Hsp20/alpha crystallin family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001449)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G12020 AT5G12030
fragaria_vesca	FvH4_2g31371
malus_domestica	MD00G1181700.v1.1 MD08G1068000.v1.1 MD08G1068200.v1.1 MD08G1068300.v1.1 MD08G1068500.v1.1 MD08G1068700.v1.1 MD08G1068800.v1.1 MD15G1053500.v1.1 MD15G1053600.v1.1 MD15G1053800.v1.1
prunus_persica	Prupe.1G407100_v2.0.a1 Prupe.1G407200_v2.0.a1 Prupe.1G407300_v2.0.a1
pyrus_communis	pycom08g05660 pycom08g05670
rosa_chinensis	RchiOBHm_Chr6g0311451 RchiOBHm_Chr6g0311461 RchiOBHm_Chr6g0311471
rosa_laevigata	RLG00000010403 RLG00000010404 RLG00000010405
rosa_multiflora	Rmu_co8421495.1_g000001 Rmu_sc0006915.1_g000010 Rmu_sc0006915.1_g000011 Rmu_sc0006915.1_g000012 Rmu_sc0013619.1_g000003 Rmu_sc0013619.1_g000004 Rmu_sc0013619.1_g000006 Rmu_sc0015790.1_g000003 Rmu_sc0015790.1_g000004
rosa_roxburghii	Rroxscaffold_7G00157590 Rroxscaffold_7G00157600
rosa_rugosa	Rorug06G0389100 Rorug06G0389100 Rorug06G0389200
rosa_samantha	Rh2AG205100 Rh2BG216900 Rh2DG211400 Rh6AG503500 Rh6AG503700 Rh6BG514200 Rh6BG514300 Rh6CG520000 Rh6CG520100 Rh6DG506100
rosa_wichuraiana	Rw2G016340 Rw6G043850 Rw6G043860 Rw6G043870

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	430
Acc36I	ACCTGC	1 cut(s)	430
AccB1I	GGYRCC	1 cut(s)	634
AccII	CGCG	1 cut(s)	333
AciI	CCGC	7 cut(s)	62, 107, 268, 275, 331, 471, 641
AcoI	YGGCCR	1 cut(s)	360
AcsI	RAATTY	1 cut(s)	133
AcvI	CACGTG	1 cut(s)	29
AcyI	GRCGYC	1 cut(s)	336
AfaI	GTAC	1 cut(s)	377
AfiI	CCNNNNNNNGG	3 cut(s)	201, 318, 607
AflIII	ACRYGT	2 cut(s)	28, 390
AjiI	CACGTC	1 cut(s)	367
AjuI	GAANNNNNNNTTGG	2 cut(s)	594, 626
AluBI	AGCT	2 cut(s)	161, 262
AluI	AGCT	2 cut(s)	161, 262
Alw26I	GTCTC	1 cut(s)	37
AlwNI	CAGNNNCTG	1 cut(s)	271
AoxI	GGCC	1 cut(s)	360
ApeKI	GCWGC	4 cut(s)	109, 256, 259, 559
ApoI	RAATTY	1 cut(s)	133
AspLEI	GCGC	1 cut(s)	53
AspS9I	GGNCC	1 cut(s)	321
AsuC2I	CCSGG	2 cut(s)	319, 411
AvaII	GGWCC	1 cut(s)	321
AxyI	CCTNAGG	1 cut(s)	285
BanI	GGYRCC	1 cut(s)	634
BanII	GRGCYC	1 cut(s)	417
BbrPI	CACGTG	1 cut(s)	29
BbsI	GAAGAC	2 cut(s)	305, 659
BbvCI	CCTCAGC	1 cut(s)	645
BbvI	GCAGC	4 cut(s)	96, 268, 271, 546
BccI	CCATC	2 cut(s)	514, 599
BclI	TGATCA	1 cut(s)	465
BcnI	CCSGG	2 cut(s)	319, 411
BcoDI	GTCTC	1 cut(s)	37
BfaI	CTAG	1 cut(s)	5
BfmI	CTRYAG	3 cut(s)	156, 254, 263
BfuAI	ACCTGC	1 cut(s)	430
BisI	GCNGC	6 cut(s)	110, 257, 260, 269, 472, 560
BlsI	GCNGC	6 cut(s)	111, 258, 261, 270, 473, 561
Bme1390I	CCNGG	2 cut(s)	319, 411
Bme18I	GGWCC	1 cut(s)	321
BmgBI	CACGTC	1 cut(s)	367
BmgT120I	GGNCC	1 cut(s)	321
BmiI	GGNNCC	1 cut(s)	636
BmrFI	CCNGG	2 cut(s)	319, 411
BmsI	GCATC	2 cut(s)	223, 571
BoxI	GACNNNNGTC	1 cut(s)	326
BpiI	GAAGAC	2 cut(s)	305, 659
BplI	GAGNNNNNCTC	2 cut(s)	287, 319
BpmI	CTGGAG	1 cut(s)	19
Bpu10I	CCTNAGC	1 cut(s)	645
BpuEI	CTTGAG	1 cut(s)	401
BpuMI	CCSGG	2 cut(s)	319, 411
BsaAI	YACGTR	2 cut(s)	29, 391
BsaHI	GRCGYC	1 cut(s)	336
BsaJI	CCNNGG	2 cut(s)	339, 410
Bsc4I	CCNNNNNNNGG	3 cut(s)	201, 318, 607
Bse21I	CCTNAGG	1 cut(s)	285
BseDI	CCNNGG	2 cut(s)	339, 410
BseGI	GGATG	4 cut(s)	120, 238, 454, 525
BseLI	CCNNNNNNNGG	3 cut(s)	201, 318, 607
BseMII	CTCAG	3 cut(s)	276, 555, 659
BseRI	GAGGAG	5 cut(s)	68, 73, 217, 302, 541
BseX3I	CGGCCG	1 cut(s)	360
BseXI	GCAGC	4 cut(s)	96, 268, 271, 546
BsgI	GTGCAG	1 cut(s)	458
Bsh1236I	CGCG	1 cut(s)	333
Bsh1285I	CGRYCG	1 cut(s)	363
BshFI	GGCC	1 cut(s)	362
BshNI	GGYRCC	1 cut(s)	634
BsiEI	CGRYCG	1 cut(s)	363
BsiSI	CCGG	3 cut(s)	319, 359, 410
BslFI	GGGAC	1 cut(s)	440
BslI	CCNNNNNNNGG	3 cut(s)	201, 318, 607
BsmAI	GTCTC	1 cut(s)	37
BsmFI	GGGAC	1 cut(s)	440
BsmI	GAATGC	1 cut(s)	574
BsnI	GGCC	1 cut(s)	362
Bsp1286I	GDGCHC	1 cut(s)	417
Bsp143I	GATC	2 cut(s)	399, 465
BspACI	CCGC	7 cut(s)	62, 107, 268, 275, 331, 471, 641
BspANI	GGCC	1 cut(s)	362
BspCNI	CTCAG	3 cut(s)	277, 556, 658
BspFNI	CGCG	1 cut(s)	333
BspHI	TCATGA	1 cut(s)	243
BspLI	GGNNCC	1 cut(s)	636
BspMAI	CTGCAG	1 cut(s)	258
BspMI	ACCTGC	1 cut(s)	430
BspT107I	GGYRCC	1 cut(s)	634
BssECI	CCNNGG	2 cut(s)	339, 410
BssMI	GATC	2 cut(s)	399, 465
BssNI	GRCGYC	1 cut(s)	336
BssT1I	CCWWGG	1 cut(s)	339
Bst4CI	ACNGT	2 cut(s)	619, 625
Bst6I	CTCTTC	2 cut(s)	194, 476
BstACI	GRCGYC	1 cut(s)	336
BstBAI	YACGTR	2 cut(s)	29, 391
BstC8I	GCNNGC	1 cut(s)	273
BstDEI	CTNAG	3 cut(s)	285, 564, 645
BstF5I	GGATG	4 cut(s)	120, 238, 454, 525
BstFNI	CGCG	1 cut(s)	333
BstHHI	GCGC	1 cut(s)	53
BstKTI	GATC	2 cut(s)	402, 468
BstMAI	GTCTC	1 cut(s)	37
BstMBI	GATC	2 cut(s)	399, 465
BstMCI	CGRYCG	1 cut(s)	363
BstMWI	GCNNNNNNNGC	3 cut(s)	265, 268, 590
BstNSI	RCATGY	1 cut(s)	409
BstPAI	GACNNNNGTC	1 cut(s)	326
BstSCI	CCNGG	2 cut(s)	317, 409
BstSFI	CTRYAG	3 cut(s)	156, 254, 263
BstUI	CGCG	1 cut(s)	333
BstV1I	GCAGC	4 cut(s)	96, 268, 271, 546
BstV2I	GAAGAC	2 cut(s)	305, 659
BstXI	CCANNNNNNTGG	1 cut(s)	346
BstZI	CGGCCG	1 cut(s)	360
Bsu36I	CCTNAGG	1 cut(s)	285
BsuRI	GGCC	1 cut(s)	362
BtrI	CACGTC	1 cut(s)	367
BtsCI	GGATG	4 cut(s)	120, 238, 454, 525
BtsI	GCAGTG	1 cut(s)	251
BtsIMutI	CAGTG	1 cut(s)	251
BveI	ACCTGC	1 cut(s)	430
Cac8I	GCNNGC	1 cut(s)	273
CaiI	CAGNNNCTG	1 cut(s)	271
CciI	TCATGA	1 cut(s)	243
CfoI	GCGC	1 cut(s)	53
Cfr13I	GGNCC	1 cut(s)	321
CseI	GACGC	1 cut(s)	344
Csp6I	GTAC	1 cut(s)	376
CviAII	CATG	3 cut(s)	223, 244, 406
CviJI	RGCY	8 cut(s)	161, 262, 271, 344, 350, 362, 415, 649
CviKI_1	RGCY	8 cut(s)	161, 262, 271, 344, 350, 362, 415, 649
CviQI	GTAC	1 cut(s)	376
DdeI	CTNAG	3 cut(s)	285, 564, 645
DpnI	GATC	2 cut(s)	401, 467
DpnII	GATC	2 cut(s)	399, 465
EaeI	YGGCCR	1 cut(s)	360
EagI	CGGCCG	1 cut(s)	360
Eam1104I	CTCTTC	2 cut(s)	194, 476
EarI	CTCTTC	2 cut(s)	194, 476
EciI	GGCGGA	1 cut(s)	290
EclXI	CGGCCG	1 cut(s)	360
Eco130I	CCWWGG	1 cut(s)	339
Eco24I	GRGCYC	1 cut(s)	417
Eco47I	GGWCC	1 cut(s)	321
Eco52I	CGGCCG	1 cut(s)	360
Eco72I	CACGTG	1 cut(s)	29
Eco81I	CCTNAGG	1 cut(s)	285
EcoT14I	CCWWGG	1 cut(s)	339
EcoT38I	GRGCYC	1 cut(s)	417
ErhI	CCWWGG	1 cut(s)	339
FaeI	CATG	3 cut(s)	226, 247, 409
FaiI	YATR	8 cut(s)	48, 93, 103, 224, 245, 347, 407, 545
FaqI	GGGAC	1 cut(s)	440
FatI	CATG	3 cut(s)	222, 243, 405
FbaI	TGATCA	1 cut(s)	465
Fnu4HI	GCNGC	6 cut(s)	110, 257, 260, 269, 472, 560
FokI	GGATG	4 cut(s)	107, 245, 461, 532
FriOI	GRGCYC	1 cut(s)	417
Fsp4HI	GCNGC	6 cut(s)	110, 257, 260, 269, 472, 560
FspBI	CTAG	1 cut(s)	5
GlaI	GCGC	1 cut(s)	52
GluI	GCNGC	6 cut(s)	110, 257, 260, 269, 472, 560
GsuI	CTGGAG	1 cut(s)	19
HaeIII	GGCC	1 cut(s)	362
HapII	CCGG	3 cut(s)	319, 359, 410
HgaI	GACGC	1 cut(s)	344
HhaI	GCGC	1 cut(s)	53
Hin1I	GRCGYC	1 cut(s)	336
Hin1II	CATG	3 cut(s)	226, 247, 409
Hin6I	GCGC	1 cut(s)	51
HinP1I	GCGC	1 cut(s)	51
HinfI	GANTC	2 cut(s)	8, 219
HpaII	CCGG	3 cut(s)	319, 359, 410
Hpy188I	TCNGA	2 cut(s)	218, 465
Hpy188III	TCNNGA	5 cut(s)	36, 230, 244, 397, 673
Hpy99I	CGWCG	2 cut(s)	338, 368
HpyAV	CCTTC	2 cut(s)	364, 625
HpyCH4III	ACNGT	2 cut(s)	619, 625
HpyCH4IV	ACGT	4 cut(s)	28, 327, 366, 390
HpyCH4V	TGCA	2 cut(s)	256, 439
HpyF10VI	GCNNNNNNNGC	3 cut(s)	265, 268, 590
HpyF3I	CTNAG	3 cut(s)	285, 564, 645
HpySE526I	ACGT	4 cut(s)	28, 327, 366, 390
Hsp92I	GRCGYC	1 cut(s)	336
Hsp92II	CATG	3 cut(s)	226, 247, 409
HspAI	GCGC	1 cut(s)	51
Ksp22I	TGATCA	1 cut(s)	465
Kzo9I	GATC	2 cut(s)	399, 465
LmnI	GCTCC	2 cut(s)	117, 241
Lsp1109I	GCAGC	4 cut(s)	96, 268, 271, 546
LweI	GCATC	2 cut(s)	223, 571
MaeI	CTAG	1 cut(s)	5
MaeII	ACGT	4 cut(s)	28, 327, 366, 390
MaeIII	GTNAC	1 cut(s)	619
MalI	GATC	2 cut(s)	401, 467
MboI	GATC	2 cut(s)	399, 465
MboII	GAAGA	4 cut(s)	211, 310, 493, 664
MhlI	GDGCHC	1 cut(s)	417
MluCI	AATT	2 cut(s)	133, 382
MmeI	TCCRAC	1 cut(s)	330
MseI	TTAA	1 cut(s)	68
MslI	CAYNNNNRTG	1 cut(s)	434
MspA1I	CMGCKG	3 cut(s)	109, 268, 471
MspI	CCGG	3 cut(s)	319, 359, 410
MspR9I	CCNGG	2 cut(s)	319, 411
Mva1269I	GAATGC	1 cut(s)	574
MvnI	CGCG	1 cut(s)	333
MwoI	GCNNNNNNNGC	3 cut(s)	265, 268, 590
NciI	CCSGG	2 cut(s)	319, 411
NdeII	GATC	2 cut(s)	399, 465
NlaIII	CATG	3 cut(s)	226, 247, 409
NlaIV	GGNNCC	1 cut(s)	636
NmuCI	GTSAC	1 cut(s)	619
NspI	RCATGY	1 cut(s)	409
PagI	TCATGA	1 cut(s)	243
PaqCI	CACCTGC	1 cut(s)	430
PctI	GAATGC	1 cut(s)	574
PfeI	GAWTC	2 cut(s)	8, 219
PkrI	GCNGC	6 cut(s)	111, 258, 261, 270, 473, 561
PmaCI	CACGTG	1 cut(s)	29
PmlI	CACGTG	1 cut(s)	29
Ppu21I	YACGTR	2 cut(s)	29, 391
PshAI	GACNNNNGTC	1 cut(s)	326
PspCI	CACGTG	1 cut(s)	29
PspN4I	GGNNCC	1 cut(s)	636
PspPI	GGNCC	1 cut(s)	321
PstI	CTGCAG	1 cut(s)	258
PstNI	CAGNNNCTG	1 cut(s)	271
RsaI	GTAC	1 cut(s)	377
RsaNI	GTAC	1 cut(s)	376
RseI	CAYNNNNRTG	1 cut(s)	434
SaqAI	TTAA	1 cut(s)	68
SatI	GCNGC	6 cut(s)	110, 257, 260, 269, 472, 560
Sau3AI	GATC	2 cut(s)	399, 465
Sau96I	GGNCC	1 cut(s)	321
ScrFI	CCNGG	2 cut(s)	319, 411
SduI	GDGCHC	1 cut(s)	417
SfaNI	GCATC	2 cut(s)	223, 571
SfcI	CTRYAG	3 cut(s)	156, 254, 263
SinI	GGWCC	1 cut(s)	321
SmiMI	CAYNNNNRTG	1 cut(s)	434
SmlI	CTYRAG	1 cut(s)	416
SmoI	CTYRAG	1 cut(s)	416
Sse9I	AATT	2 cut(s)	133, 382
SsiI	CCGC	7 cut(s)	62, 107, 268, 275, 331, 471, 641
SspI	AATATT	1 cut(s)	679
SspMI	CTAG	1 cut(s)	5
StyD4I	CCNGG	2 cut(s)	317, 409
StyI	CCWWGG	1 cut(s)	339
TaaI	ACNGT	2 cut(s)	619, 625
TaiI	ACGT	4 cut(s)	31, 330, 369, 393
TaqI	TCGA	2 cut(s)	147, 402
TasI	AATT	2 cut(s)	133, 382
TauI	GCSGC	2 cut(s)	271, 474
TfiI	GAWTC	2 cut(s)	8, 219
Tru1I	TTAA	1 cut(s)	68
Tru9I	TTAA	1 cut(s)	68
TscAI	CASTG	1 cut(s)	258
TseFI	GTSAC	1 cut(s)	619
TseI	GCWGC	4 cut(s)	109, 256, 259, 559
Tsp45I	GTSAC	1 cut(s)	619
TspRI	CASTG	1 cut(s)	258
VpaK11BI	GGWCC	1 cut(s)	321
XapI	RAATTY	1 cut(s)	133
XceI	RCATGY	1 cut(s)	409
XspI	CTAG	1 cut(s)	5

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.