Rmu_sc0006915.1_g000011

kDa class II heat shock protein-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0006915.1
OG0001449
Physical Location & Seq
Reverse (-)
35930 .. 36362
433 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0006915.1_g000011.1.cds

Sequence Viewer

Length: 384 bp
atgggtctggatgctccaatcatgacagcactgcagcagctacagcagctggcggacttccctgaggagaacgagaagacctccaacgccccgacccggacctacgtccgcgacgccaaggctatggcttccactccggccgacgtgaaggagtaccccaattcctacgtgtggaggatgaagagggaggacgagaaagagggggtaaagtatttgaggatggagaggagggttggcaagtttatgaggaagtttgtgctgcctgagaatgctaatgctgatgccatttctgctgtttgccaagatggggttcttactgtgactgtggagaaggtgccaccgcctcagccgaagaccaagactattgaggtcaagattggttag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006950 GO:0008150 GO:0009266 GO:0009408 GO:0009628 GO:0044424 GO:0044464 GO:0050896
KEGG Pathways
Metabolic & Signaling
ko04141 map04141
Pfam Domains
Protein Families
HSP20

Protein Analysis

127

Amino Acids

14.34

Weight (kDa)

8.66

Isoelectric Point (pI)

47.55

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 334
AccII CGCG 1 cut(s) 111
AciI CCGC 3 cut(s) 53, 109, 341
AcoI YGGCCR 1 cut(s) 138
AcyI GRCGYC 1 cut(s) 114
AfaI GTAC 1 cut(s) 155
AfiI CCNNNNNNNGG 3 cut(s) 96, 171, 307
AflIII ACRYGT 1 cut(s) 168
AjiI CACGTC 1 cut(s) 145
AjuI GAANNNNNNNTTGG 2 cut(s) 294, 326
AluBI AGCT 2 cut(s) 40, 49
AluI AGCT 2 cut(s) 40, 49
AlwNI CAGNNNCTG 1 cut(s) 49
AoxI GGCC 1 cut(s) 138
ApeKI GCWGC 4 cut(s) 34, 37, 46, 259
AspS9I GGNCC 1 cut(s) 99
AsuC2I CCSGG 1 cut(s) 97
AvaII GGWCC 1 cut(s) 99
AxyI CCTNAGG 1 cut(s) 63
BanI GGYRCC 1 cut(s) 334
BbsI GAAGAC 2 cut(s) 83, 359
BbvCI CCTCAGC 1 cut(s) 345
BbvI GCAGC 4 cut(s) 46, 49, 58, 246
BccI CCATC 2 cut(s) 214, 299
BcnI CCSGG 1 cut(s) 97
BfmI CTRYAG 2 cut(s) 32, 41
BisI GCNGC 4 cut(s) 35, 38, 47, 260
BlsI GCNGC 4 cut(s) 36, 39, 48, 261
Bme1390I CCNGG 1 cut(s) 97
Bme18I GGWCC 1 cut(s) 99
BmgBI CACGTC 1 cut(s) 145
BmgT120I GGNCC 1 cut(s) 99
BmiI GGNNCC 1 cut(s) 336
BmrFI CCNGG 1 cut(s) 97
BmsI GCATC 1 cut(s) 271
BoxI GACNNNNGTC 1 cut(s) 104
BpiI GAAGAC 2 cut(s) 83, 359
BplI GAGNNNNNCTC 2 cut(s) 65, 97
Bpu10I CCTNAGC 1 cut(s) 345
BpuMI CCSGG 1 cut(s) 97
BsaAI YACGTR 1 cut(s) 169
BsaHI GRCGYC 1 cut(s) 114
BsaJI CCNNGG 1 cut(s) 117
Bsc4I CCNNNNNNNGG 3 cut(s) 96, 171, 307
Bse21I CCTNAGG 1 cut(s) 63
BseDI CCNNGG 1 cut(s) 117
BseGI GGATG 3 cut(s) 16, 183, 225
BseLI CCNNNNNNNGG 3 cut(s) 96, 171, 307
BseMII CTCAG 3 cut(s) 54, 255, 359
BseRI GAGGAG 2 cut(s) 80, 241
BseX3I CGGCCG 1 cut(s) 138
BseXI GCAGC 4 cut(s) 46, 49, 58, 246
Bsh1236I CGCG 1 cut(s) 111
Bsh1285I CGRYCG 1 cut(s) 141
BshFI GGCC 1 cut(s) 140
BshNI GGYRCC 1 cut(s) 334
BsiEI CGRYCG 1 cut(s) 141
BsiSI CCGG 2 cut(s) 97, 137
BslI CCNNNNNNNGG 3 cut(s) 96, 171, 307
BsmI GAATGC 1 cut(s) 274
BsnI GGCC 1 cut(s) 140
BspACI CCGC 3 cut(s) 53, 109, 341
BspANI GGCC 1 cut(s) 140
BspCNI CTCAG 3 cut(s) 55, 256, 358
BspFNI CGCG 1 cut(s) 111
BspHI TCATGA 1 cut(s) 21
BspLI GGNNCC 1 cut(s) 336
BspMAI CTGCAG 1 cut(s) 36
BspT107I GGYRCC 1 cut(s) 334
BssECI CCNNGG 1 cut(s) 117
BssNI GRCGYC 1 cut(s) 114
BssT1I CCWWGG 1 cut(s) 117
Bst4CI ACNGT 2 cut(s) 319, 325
Bst6I CTCTTC 1 cut(s) 176
BstACI GRCGYC 1 cut(s) 114
BstBAI YACGTR 1 cut(s) 169
BstC8I GCNNGC 1 cut(s) 51
BstDEI CTNAG 3 cut(s) 63, 264, 345
BstF5I GGATG 3 cut(s) 16, 183, 225
BstFNI CGCG 1 cut(s) 111
BstMCI CGRYCG 1 cut(s) 141
BstMWI GCNNNNNNNGC 3 cut(s) 43, 46, 290
BstPAI GACNNNNGTC 1 cut(s) 104
BstSCI CCNGG 1 cut(s) 95
BstSFI CTRYAG 2 cut(s) 32, 41
BstUI CGCG 1 cut(s) 111
BstV1I GCAGC 4 cut(s) 46, 49, 58, 246
BstV2I GAAGAC 2 cut(s) 83, 359
BstXI CCANNNNNNTGG 1 cut(s) 124
BstZI CGGCCG 1 cut(s) 138
Bsu36I CCTNAGG 1 cut(s) 63
BsuRI GGCC 1 cut(s) 140
BtrI CACGTC 1 cut(s) 145
BtsCI GGATG 3 cut(s) 16, 183, 225
BtsI GCAGTG 1 cut(s) 29
BtsIMutI CAGTG 1 cut(s) 29
Cac8I GCNNGC 1 cut(s) 51
CaiI CAGNNNCTG 1 cut(s) 49
CciI TCATGA 1 cut(s) 21
Cfr13I GGNCC 1 cut(s) 99
CseI GACGC 1 cut(s) 122
Csp6I GTAC 1 cut(s) 154
CviAII CATG 1 cut(s) 22
CviJI RGCY 6 cut(s) 40, 49, 122, 128, 140, 349
CviKI_1 RGCY 6 cut(s) 40, 49, 122, 128, 140, 349
CviQI GTAC 1 cut(s) 154
DdeI CTNAG 3 cut(s) 63, 264, 345
EaeI YGGCCR 1 cut(s) 138
EagI CGGCCG 1 cut(s) 138
Eam1104I CTCTTC 1 cut(s) 176
EarI CTCTTC 1 cut(s) 176
EciI GGCGGA 1 cut(s) 68
EclXI CGGCCG 1 cut(s) 138
Eco130I CCWWGG 1 cut(s) 117
Eco47I GGWCC 1 cut(s) 99
Eco52I CGGCCG 1 cut(s) 138
Eco81I CCTNAGG 1 cut(s) 63
EcoT14I CCWWGG 1 cut(s) 117
ErhI CCWWGG 1 cut(s) 117
FaeI CATG 1 cut(s) 25
FaiI YATR 3 cut(s) 23, 125, 245
FatI CATG 1 cut(s) 21
Fnu4HI GCNGC 4 cut(s) 35, 38, 47, 260
FokI GGATG 3 cut(s) 23, 190, 232
Fsp4HI GCNGC 4 cut(s) 35, 38, 47, 260
GluI GCNGC 4 cut(s) 35, 38, 47, 260
HaeIII GGCC 1 cut(s) 140
HapII CCGG 2 cut(s) 97, 137
HgaI GACGC 1 cut(s) 122
Hin1I GRCGYC 1 cut(s) 114
Hin1II CATG 1 cut(s) 25
HpaII CCGG 2 cut(s) 97, 137
Hpy188III TCNNGA 3 cut(s) 8, 22, 373
Hpy99I CGWCG 2 cut(s) 116, 146
HpyAV CCTTC 2 cut(s) 142, 325
HpyCH4III ACNGT 2 cut(s) 319, 325
HpyCH4IV ACGT 3 cut(s) 105, 144, 168
HpyCH4V TGCA 1 cut(s) 34
HpyF10VI GCNNNNNNNGC 3 cut(s) 43, 46, 290
HpyF3I CTNAG 3 cut(s) 63, 264, 345
HpySE526I ACGT 3 cut(s) 105, 144, 168
Hsp92I GRCGYC 1 cut(s) 114
Hsp92II CATG 1 cut(s) 25
LmnI GCTCC 1 cut(s) 19
LpnPI CCDG 5 cut(s) 35, 75, 110, 150, 276
Lsp1109I GCAGC 4 cut(s) 46, 49, 58, 246
LweI GCATC 1 cut(s) 271
MaeII ACGT 3 cut(s) 105, 144, 168
MaeIII GTNAC 1 cut(s) 319
MboII GAAGA 3 cut(s) 88, 193, 364
MluCI AATT 1 cut(s) 160
MmeI TCCRAC 1 cut(s) 108
MspA1I CMGCKG 1 cut(s) 49
MspI CCGG 2 cut(s) 97, 137
MspR9I CCNGG 1 cut(s) 97
Mva1269I GAATGC 1 cut(s) 274
MvnI CGCG 1 cut(s) 111
MwoI GCNNNNNNNGC 3 cut(s) 43, 46, 290
NciI CCSGG 1 cut(s) 97
NlaIII CATG 1 cut(s) 25
NlaIV GGNNCC 1 cut(s) 336
NmuCI GTSAC 1 cut(s) 319
PagI TCATGA 1 cut(s) 21
PctI GAATGC 1 cut(s) 274
PkrI GCNGC 4 cut(s) 36, 39, 48, 261
Ppu21I YACGTR 1 cut(s) 169
PshAI GACNNNNGTC 1 cut(s) 104
PspN4I GGNNCC 1 cut(s) 336
PspPI GGNCC 1 cut(s) 99
PstI CTGCAG 1 cut(s) 36
PstNI CAGNNNCTG 1 cut(s) 49
PvuII CAGCTG 1 cut(s) 49
RsaI GTAC 1 cut(s) 155
RsaNI GTAC 1 cut(s) 154
SatI GCNGC 4 cut(s) 35, 38, 47, 260
Sau96I GGNCC 1 cut(s) 99
ScrFI CCNGG 1 cut(s) 97
SetI ASST 9 cut(s) 42, 51, 83, 104, 108, 147, 171, 336, 372
SfaNI GCATC 1 cut(s) 271
SfcI CTRYAG 2 cut(s) 32, 41
SinI GGWCC 1 cut(s) 99
Sse9I AATT 1 cut(s) 160
SsiI CCGC 3 cut(s) 53, 109, 341
StyD4I CCNGG 1 cut(s) 95
StyI CCWWGG 1 cut(s) 117
TaaI ACNGT 2 cut(s) 319, 325
TaiI ACGT 3 cut(s) 108, 147, 171
TasI AATT 1 cut(s) 160
TscAI CASTG 1 cut(s) 36
TseFI GTSAC 1 cut(s) 319
TseI GCWGC 4 cut(s) 34, 37, 46, 259
Tsp45I GTSAC 1 cut(s) 319
TspDTI ATGAA 1 cut(s) 194
TspRI CASTG 1 cut(s) 36
VpaK11BI GGWCC 1 cut(s) 99
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.