Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0001449

Physical Location & Seq

Genomic Coordinates Reverse (-)

3883957 .. 3884838

Gene Structure 882 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G12030.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 471 bp

ATGGATTTGGAGTTTGGAAGGTTTCCAATATTTTCAATCCTCGAAGACATGCTTGAAGCCCCTGAAGAACAAACCGAGAAGACTCGTAACAACCCTTCAAGAGCTTACATGCGAGACGCAAAGGCAATGGCTGCTACACCAGCTGACGTTATCGAGCACCCGGATGCGTACGTTTTCGCCGTGGACATGCCTGGAATCAAAGGAGATGAGATTCAGGTCCAGATAGAGAACGAGAACGTGCTTGTGGTGAGTGGCAAAAGACAGAGGGACAACAAGGAGAATGAAGGTGTGAAGTTTGTGAGGATGGAGAGGAGGATGGGGAAGTTTATGAGGAAGTTTCAGTTACCTGATAATGCAGATTTGGAGAAGATCTCTGCGGCTTGTAATGACGGTGTGTTGAAAGTGACTATTCCGAAACTTCCTCCTCCTGAGCCAAAGAAACCAAAGACTATACAAGTTCAAGTCGCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000302 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006457 GO:0006950 GO:0006970 GO:0006972 GO:0006979 GO:0008150 GO:0009266 GO:0009314 GO:0009408 GO:0009416 GO:0009628 GO:0009636 GO:0009642 GO:0009644 GO:0009987 GO:0010035 GO:0042221 GO:0042493 GO:0042542 GO:0044424 GO:0044444 GO:0044464 GO:0046677 GO:0050896 GO:0051082 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko04141 map04141

Pfam Domains

Protein Families

HSP20

Protein Analysis

156

Amino Acids

17.69

Weight (kDa)

5.59

Isoelectric Point (pI)

44.37

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
HSP20	PF00011	49 - 154	1.1e-32	Hsp20/alpha crystallin family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0001449)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G12020 AT5G12030
fragaria_vesca	FvH4_2g31371
malus_domestica	MD00G1181700.v1.1 MD08G1068000.v1.1 MD08G1068200.v1.1 MD08G1068300.v1.1 MD08G1068500.v1.1 MD08G1068700.v1.1 MD08G1068800.v1.1 MD15G1053500.v1.1 MD15G1053600.v1.1 MD15G1053800.v1.1
prunus_persica	Prupe.1G407100_v2.0.a1 Prupe.1G407200_v2.0.a1 Prupe.1G407300_v2.0.a1
pyrus_communis	pycom08g05660 pycom08g05670
rosa_chinensis	RchiOBHm_Chr6g0311451 RchiOBHm_Chr6g0311461 RchiOBHm_Chr6g0311471
rosa_laevigata	RLG00000010403 RLG00000010404 RLG00000010405
rosa_multiflora	Rmu_co8421495.1_g000001 Rmu_sc0006915.1_g000010 Rmu_sc0006915.1_g000011 Rmu_sc0006915.1_g000012 Rmu_sc0013619.1_g000003 Rmu_sc0013619.1_g000004 Rmu_sc0013619.1_g000006 Rmu_sc0015790.1_g000003 Rmu_sc0015790.1_g000004
rosa_roxburghii	Rroxscaffold_7G00157590 Rroxscaffold_7G00157600
rosa_rugosa	Rorug06G0389100 Rorug06G0389100 Rorug06G0389200
rosa_samantha	Rh2AG205100 Rh2BG216900 Rh2DG211400 Rh6AG503500 Rh6AG503700 Rh6BG514200 Rh6BG514300 Rh6CG520000 Rh6CG520100 Rh6DG506100
rosa_wichuraiana	Rw2G016340 Rw6G043850 Rw6G043860 Rw6G043870

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	377
AcuI	CTGAAG	1 cut(s)	84
AfaI	GTAC	1 cut(s)	170
AgsI	TTSAA	5 cut(s)	36, 56, 99, 400, 461
AjnI	CCWGG	1 cut(s)	190
AluBI	AGCT	2 cut(s)	104, 143
AluI	AGCT	2 cut(s)	104, 143
Alw21I	GWGCWC	1 cut(s)	159
Alw26I	GTCTC	1 cut(s)	108
ApeKI	GCWGC	1 cut(s)	131
AspS9I	GGNCC	1 cut(s)	217
AsuC2I	CCSGG	1 cut(s)	161
AsuHPI	GGTGA	1 cut(s)	259
AvaII	GGWCC	1 cut(s)	217
BarI	GAAGNNNNNNTAC	2 cut(s)	79, 111
BbsI	GAAGAC	2 cut(s)	51, 86
Bbv12I	GWGCWC	1 cut(s)	159
BbvI	GCAGC	1 cut(s)	118
BccI	CCATC	2 cut(s)	298, 310
BceAI	ACGGC	1 cut(s)	164
BciT130I	CCWGG	1 cut(s)	192
BcnI	CCSGG	1 cut(s)	161
BcoDI	GTCTC	1 cut(s)	108
BglII	AGATCT	1 cut(s)	369
BisI	GCNGC	2 cut(s)	132, 378
BlsI	GCNGC	2 cut(s)	133, 379
Bme1390I	CCNGG	2 cut(s)	161, 192
Bme18I	GGWCC	1 cut(s)	217
BmgT120I	GGNCC	1 cut(s)	217
BmrFI	CCNGG	2 cut(s)	161, 192
BmsI	GCATC	1 cut(s)	154
BpiI	GAAGAC	2 cut(s)	51, 86
BplI	GAGNNNNNCTC	2 cut(s)	356, 388
Bpu10I	CCTNAGC	1 cut(s)	429
BpuMI	CCSGG	1 cut(s)	161
BsaJI	CCNNGG	1 cut(s)	180
Bse3DI	GCAATG	1 cut(s)	132
BseBI	CCWGG	1 cut(s)	192
BseDI	CCNNGG	1 cut(s)	180
BseGI	GGATG	3 cut(s)	169, 309, 321
BseMI	GCAATG	1 cut(s)	132
BseMII	CTCAG	1 cut(s)	420
BseRI	GAGGAG	2 cut(s)	325, 414
BseXI	GCAGC	1 cut(s)	118
BsiHKAI	GWGCWC	1 cut(s)	159
BsiSI	CCGG	1 cut(s)	161
BsiWI	CGTACG	1 cut(s)	168
BslFI	GGGAC	1 cut(s)	281
BsmAI	GTCTC	1 cut(s)	108
BsmBI	CGTCTC	1 cut(s)	108
BsmFI	GGGAC	1 cut(s)	281
Bsp1286I	GDGCHC	1 cut(s)	159
Bsp143I	GATC	1 cut(s)	369
BspACI	CCGC	1 cut(s)	377
BspCNI	CTCAG	1 cut(s)	421
BsrDI	GCAATG	1 cut(s)	132
BssECI	CCNNGG	1 cut(s)	180
BssMI	GATC	1 cut(s)	369
Bst2UI	CCWGG	1 cut(s)	192
Bst4CI	ACNGT	1 cut(s)	392
BstAPI	GCANNNNNTGC	1 cut(s)	131
BstDEI	CTNAG	1 cut(s)	429
BstDSI	CCRYGG	1 cut(s)	180
BstF5I	GGATG	3 cut(s)	169, 309, 321
BstKTI	GATC	1 cut(s)	372
BstMAI	GTCTC	1 cut(s)	108
BstMBI	GATC	1 cut(s)	369
BstMWI	GCNNNNNNNGC	2 cut(s)	131, 140
BstNI	CCWGG	1 cut(s)	192
BstNSI	RCATGY	3 cut(s)	52, 112, 190
BstSCI	CCNGG	2 cut(s)	159, 190
BstV1I	GCAGC	1 cut(s)	118
BstV2I	GAAGAC	2 cut(s)	51, 86
BstX2I	RGATCY	1 cut(s)	369
BstYI	RGATCY	1 cut(s)	369
BtgI	CCRYGG	1 cut(s)	180
BtsCI	GGATG	3 cut(s)	169, 309, 321
Cfr13I	GGNCC	1 cut(s)	217
CseI	GACGC	1 cut(s)	125
Csp6I	GTAC	1 cut(s)	169
CviAII	CATG	3 cut(s)	49, 109, 187
CviJI	RGCY	6 cut(s)	59, 104, 131, 143, 380, 433
CviKI_1	RGCY	6 cut(s)	59, 104, 131, 143, 380, 433
CviQI	GTAC	1 cut(s)	169
DdeI	CTNAG	1 cut(s)	429
DpnI	GATC	1 cut(s)	371
DpnII	GATC	1 cut(s)	369
Eco47I	GGWCC	1 cut(s)	217
Eco57I	CTGAAG	1 cut(s)	84
EcoRII	CCWGG	1 cut(s)	190
Esp3I	CGTCTC	1 cut(s)	108
FaeI	CATG	3 cut(s)	52, 112, 190
FaiI	YATR	5 cut(s)	50, 110, 188, 329, 452
FalI	AAGNNNNNCTT	2 cut(s)	36, 68
FaqI	GGGAC	1 cut(s)	281
FatI	CATG	3 cut(s)	48, 108, 186
Fnu4HI	GCNGC	2 cut(s)	132, 378
FokI	GGATG	3 cut(s)	176, 316, 328
Fsp4HI	GCNGC	2 cut(s)	132, 378
GluI	GCNGC	2 cut(s)	132, 378
HapII	CCGG	1 cut(s)	161
HgaI	GACGC	1 cut(s)	125
Hin1II	CATG	3 cut(s)	52, 112, 190
HinfI	GANTC	3 cut(s)	82, 195, 211
HpaII	CCGG	1 cut(s)	161
HphI	GGTGA	1 cut(s)	259
Hpy166II	GTNNAC	1 cut(s)	184
Hpy188I	TCNGA	1 cut(s)	414
Hpy188III	TCNNGA	3 cut(s)	99, 220, 428
Hpy8I	GTNNAC	1 cut(s)	184
HpyAV	CCTTC	3 cut(s)	12, 105, 278
HpyCH4III	ACNGT	1 cut(s)	392
HpyCH4IV	ACGT	3 cut(s)	147, 171, 237
HpyCH4V	TGCA	1 cut(s)	356
HpyF10VI	GCNNNNNNNGC	2 cut(s)	131, 140
HpyF3I	CTNAG	1 cut(s)	429
HpySE526I	ACGT	3 cut(s)	147, 171, 237
Hsp92II	CATG	3 cut(s)	52, 112, 190
Kzo9I	GATC	1 cut(s)	369
LpnPI	CCDG	9 cut(s)	75, 153, 174, 177, 200, 204, 233, 360, 441
Lsp1109I	GCAGC	1 cut(s)	118
LweI	GCATC	1 cut(s)	154
MaeII	ACGT	3 cut(s)	147, 171, 237
MaeIII	GTNAC	3 cut(s)	86, 342, 403
MalI	GATC	1 cut(s)	371
MboI	GATC	1 cut(s)	369
MboII	GAAGA	4 cut(s)	56, 77, 91, 379
MflI	RGATCY	1 cut(s)	369
MhlI	GDGCHC	1 cut(s)	159
MlyI	GAGTC	1 cut(s)	76
MnlI	CCTC	8 cut(s)	50, 258, 294, 303, 306, 324, 432, 435
MslI	CAYNNNNRTG	1 cut(s)	162
MspA1I	CMGCKG	1 cut(s)	143
MspI	CCGG	1 cut(s)	161
MspR9I	CCNGG	2 cut(s)	161, 192
MvaI	CCWGG	1 cut(s)	192
MwoI	GCNNNNNNNGC	2 cut(s)	131, 140
NciI	CCSGG	1 cut(s)	161
NdeII	GATC	1 cut(s)	369
NlaIII	CATG	3 cut(s)	52, 112, 190
NmuCI	GTSAC	1 cut(s)	403
NspI	RCATGY	3 cut(s)	52, 112, 190
PcsI	WCGNNNNNNNCGW	1 cut(s)	177
PfeI	GAWTC	2 cut(s)	195, 211
Pfl23II	CGTACG	1 cut(s)	168
PkrI	GCNGC	2 cut(s)	133, 379
PleI	GAGTC	1 cut(s)	76
PpsI	GAGTC	1 cut(s)	76
Psp6I	CCWGG	1 cut(s)	190
PspGI	CCWGG	1 cut(s)	190
PspLI	CGTACG	1 cut(s)	168
PspPI	GGNCC	1 cut(s)	217
PsuI	RGATCY	1 cut(s)	369
PvuII	CAGCTG	1 cut(s)	143
RsaI	GTAC	1 cut(s)	170
RsaNI	GTAC	1 cut(s)	169
RseI	CAYNNNNRTG	1 cut(s)	162
SatI	GCNGC	2 cut(s)	132, 378
Sau3AI	GATC	1 cut(s)	369
Sau96I	GGNCC	1 cut(s)	217
SchI	GAGTC	1 cut(s)	76
ScrFI	CCNGG	2 cut(s)	161, 192
SduI	GDGCHC	1 cut(s)	159
SetI	ASST	9 cut(s)	23, 106, 145, 150, 174, 219, 240, 289, 349
SfaNI	GCATC	1 cut(s)	154
SinI	GGWCC	1 cut(s)	217
SmiMI	CAYNNNNRTG	1 cut(s)	162
SsiI	CCGC	1 cut(s)	377
SspI	AATATT	1 cut(s)	30
StyD4I	CCNGG	2 cut(s)	159, 190
TaaI	ACNGT	1 cut(s)	392
TaiI	ACGT	3 cut(s)	150, 174, 240
TaqI	TCGA	2 cut(s)	42, 153
TauI	GCSGC	1 cut(s)	380
TfiI	GAWTC	2 cut(s)	195, 211
TseFI	GTSAC	1 cut(s)	403
TseI	GCWGC	1 cut(s)	131
Tsp45I	GTSAC	1 cut(s)	403
TspDTI	ATGAA	1 cut(s)	297
VpaK11BI	GGWCC	1 cut(s)	217
XceI	RCATGY	3 cut(s)	52, 112, 190

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.