Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0001449

Physical Location & Seq

Genomic Coordinates Forward (+)

35720786 .. 35721740

Gene Structure 955 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G407100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 489 bp

ATGGATTTGAGGAACGCGGGCAATATCTTCGCGGTCTTGGAAGACATGCTAGACTTGGCAGAGCAAGAGCCCGAAAAGCCCCGAAACAACAACAGAAACAACAACAACCCGTCTCGGGCGTACGTCCGAGATGCGAAAGCGATGGCGGCGACGCCGGCGGACGTGGTGGAGTACCCGAACGCGTACGTGTTCGTGGTGGATATGCCGGGAATCGAGGCGGGACAAATTAAAGTGCAGGTGGAGAACGACAACGTTTTGGTGCTGAGCGGGGAGCGAAGGCGGGAGGAAGAGATCAAGGAGAGTGGGGTGAAGTACGTGAGGATGGAGAGGAGGGTTGGGAAGTTCATGAGGAAGTTTGTTCTGCCGGAGAATGCCAATTTGGATGCGATTTCGGCGGTGGCTAAAGATGGGGTGCTCACTGTGAGGGTGGAGAAGCTGCCTCCGCCGGAGCCCAAGAGGCCCAAGACCATCCACGTCAATGTTGCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0044424 GO:0044464

KEGG Pathways

Metabolic & Signaling

ko04141 map04141

Pfam Domains

Protein Families

HSP20

Protein Analysis

163

Amino Acids

18.22

Weight (kDa)

6.64

Isoelectric Point (pI)

53.2

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001449)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G12020 AT5G12030
fragaria_vesca	FvH4_2g31371
malus_domestica	MD00G1181700.v1.1 MD08G1068000.v1.1 MD08G1068200.v1.1 MD08G1068300.v1.1 MD08G1068500.v1.1 MD08G1068700.v1.1 MD08G1068800.v1.1 MD15G1053500.v1.1 MD15G1053600.v1.1 MD15G1053800.v1.1
prunus_persica	Prupe.1G407100_v2.0.a1 Prupe.1G407200_v2.0.a1 Prupe.1G407300_v2.0.a1
pyrus_communis	pycom08g05660 pycom08g05670
rosa_chinensis	RchiOBHm_Chr6g0311451 RchiOBHm_Chr6g0311461 RchiOBHm_Chr6g0311471
rosa_laevigata	RLG00000010403 RLG00000010404 RLG00000010405
rosa_multiflora	Rmu_co8421495.1_g000001 Rmu_sc0006915.1_g000010 Rmu_sc0006915.1_g000011 Rmu_sc0006915.1_g000012 Rmu_sc0013619.1_g000003 Rmu_sc0013619.1_g000004 Rmu_sc0013619.1_g000006 Rmu_sc0015790.1_g000003 Rmu_sc0015790.1_g000004
rosa_roxburghii	Rroxscaffold_7G00157590 Rroxscaffold_7G00157600
rosa_rugosa	Rorug06G0389100 Rorug06G0389100 Rorug06G0389200
rosa_samantha	Rh2AG205100 Rh2BG216900 Rh2DG211400 Rh6AG503500 Rh6AG503700 Rh6BG514200 Rh6BG514300 Rh6CG520000 Rh6CG520100 Rh6DG506100
rosa_wichuraiana	Rw2G016340 Rw6G043850 Rw6G043860 Rw6G043870

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	226
Acc36I	ACCTGC	1 cut(s)	226
AccBSI	CCGCTC	1 cut(s)	267
AccII	CGCG	3 cut(s)	17, 32, 182
AciI	CCGC	9 cut(s)	17, 32, 146, 158, 218, 267, 280, 395, 443
AclI	AACGTT	1 cut(s)	252
AcyI	GRCGYC	1 cut(s)	152
AfaI	GTAC	4 cut(s)	122, 173, 185, 314
AfiI	CCNNNNNNNGG	1 cut(s)	115
AflIII	ACRYGT	2 cut(s)	180, 186
AjiI	CACGTC	2 cut(s)	163, 475
AjuI	GAANNNNNNNTTGG	2 cut(s)	362, 394
AluBI	AGCT	1 cut(s)	436
AluI	AGCT	1 cut(s)	436
Alw21I	GWGCWC	1 cut(s)	417
Alw26I	GTCTC	1 cut(s)	117
Ama87I	CYCGRG	1 cut(s)	114
AoxI	GGCC	1 cut(s)	458
ApeKI	GCWGC	1 cut(s)	436
AspS9I	GGNCC	1 cut(s)	459
AsuC2I	CCSGG	1 cut(s)	207
AsuHPI	GGTGA	1 cut(s)	319
AvaI	CYCGRG	1 cut(s)	114
BanII	GRGCYC	2 cut(s)	72, 453
BbsI	GAAGAC	1 cut(s)	48
Bbv12I	GWGCWC	1 cut(s)	417
BbvI	GCAGC	1 cut(s)	423
BccI	CCATC	4 cut(s)	136, 316, 401, 476
BcgI	CGANNNNNNTGC	2 cut(s)	10, 44
BcnI	CCSGG	1 cut(s)	207
BcoDI	GTCTC	1 cut(s)	117
BfaI	CTAG	1 cut(s)	50
BfuAI	ACCTGC	1 cut(s)	226
BglI	GCCNNNNNGGC	1 cut(s)	457
BisI	GCNGC	2 cut(s)	147, 437
BlpI	GCTNAGC	1 cut(s)	263
BlsI	GCNGC	2 cut(s)	148, 438
Bme1390I	CCNGG	1 cut(s)	207
BmeT110I	CYCGRG	1 cut(s)	114
BmgBI	CACGTC	2 cut(s)	163, 475
BmgT120I	GGNCC	1 cut(s)	459
BmiI	GGNNCC	1 cut(s)	450
BmrFI	CCNGG	1 cut(s)	207
BmsI	GCATC	2 cut(s)	121, 373
BpiI	GAAGAC	1 cut(s)	48
Bpu1102I	GCTNAGC	1 cut(s)	263
BpuMI	CCSGG	1 cut(s)	207
BsaAI	YACGTR	2 cut(s)	187, 316
BsaHI	GRCGYC	1 cut(s)	152
Bsc4I	CCNNNNNNNGG	1 cut(s)	115
Bse118I	RCCGGY	1 cut(s)	154
BseGI	GGATG	3 cut(s)	327, 388, 468
BseLI	CCNNNNNNNGG	1 cut(s)	115
BseMII	CTCAG	1 cut(s)	254
BseRI	GAGGAG	1 cut(s)	343
BseXI	GCAGC	1 cut(s)	423
BsgI	GTGCAG	1 cut(s)	254
Bsh1236I	CGCG	3 cut(s)	17, 32, 182
BshFI	GGCC	1 cut(s)	460
BsiHKAI	GWGCWC	1 cut(s)	417
BsiHKCI	CYCGRG	1 cut(s)	114
BsiSI	CCGG	4 cut(s)	155, 206, 365, 446
BsiWI	CGTACG	2 cut(s)	120, 183
BslFI	GGGAC	1 cut(s)	234
BslI	CCNNNNNNNGG	1 cut(s)	115
BsmAI	GTCTC	1 cut(s)	117
BsmBI	CGTCTC	1 cut(s)	117
BsmFI	GGGAC	1 cut(s)	234
BsmI	GAATGC	1 cut(s)	376
BsnI	GGCC	1 cut(s)	460
BsoBI	CYCGRG	1 cut(s)	114
Bsp1286I	GDGCHC	3 cut(s)	72, 417, 453
Bsp143I	GATC	1 cut(s)	291
Bsp1720I	GCTNAGC	1 cut(s)	263
BspACI	CCGC	9 cut(s)	17, 32, 146, 158, 218, 267, 280, 395, 443
BspANI	GGCC	1 cut(s)	460
BspCNI	CTCAG	1 cut(s)	255
BspFNI	CGCG	3 cut(s)	17, 32, 182
BspHI	TCATGA	1 cut(s)	345
BspLI	GGNNCC	1 cut(s)	450
BspMI	ACCTGC	1 cut(s)	226
BsrBI	CCGCTC	1 cut(s)	267
BsrFI	RCCGGY	1 cut(s)	154
BssAI	RCCGGY	1 cut(s)	154
BssMI	GATC	1 cut(s)	291
BssNI	GRCGYC	1 cut(s)	152
Bst4CI	ACNGT	1 cut(s)	421
Bst6I	CTCTTC	1 cut(s)	282
BstACI	GRCGYC	1 cut(s)	152
BstBAI	YACGTR	2 cut(s)	187, 316
BstC8I	GCNNGC	2 cut(s)	19, 156
BstDEI	CTNAG	1 cut(s)	263
BstF5I	GGATG	3 cut(s)	327, 388, 468
BstFNI	CGCG	3 cut(s)	17, 32, 182
BstKTI	GATC	1 cut(s)	294
BstMAI	GTCTC	1 cut(s)	117
BstMBI	GATC	1 cut(s)	291
BstMWI	GCNNNNNNNGC	6 cut(s)	76, 146, 155, 392, 442, 457
BstNSI	RCATGY	1 cut(s)	49
BstSCI	CCNGG	1 cut(s)	205
BstUI	CGCG	3 cut(s)	17, 32, 182
BstV1I	GCAGC	1 cut(s)	423
BstV2I	GAAGAC	1 cut(s)	48
BsuRI	GGCC	1 cut(s)	460
BtgZI	GCGATG	1 cut(s)	155
BtrI	CACGTC	2 cut(s)	163, 475
BtsCI	GGATG	3 cut(s)	327, 388, 468
BtsIMutI	CAGTG	1 cut(s)	417
BveI	ACCTGC	1 cut(s)	226
Cac8I	GCNNGC	2 cut(s)	19, 156
CciI	TCATGA	1 cut(s)	345
Cfr10I	RCCGGY	1 cut(s)	154
Cfr13I	GGNCC	1 cut(s)	459
CseI	GACGC	1 cut(s)	160
Csp6I	GTAC	4 cut(s)	121, 172, 184, 313
CspCI	CAANNNNNGTGG	2 cut(s)	283, 318
CviAII	CATG	2 cut(s)	46, 346
CviJI	RGCY	6 cut(s)	70, 79, 401, 436, 451, 460
CviKI_1	RGCY	6 cut(s)	70, 79, 401, 436, 451, 460
CviQI	GTAC	4 cut(s)	121, 172, 184, 313
DdeI	CTNAG	1 cut(s)	263
DpnI	GATC	1 cut(s)	293
DpnII	GATC	1 cut(s)	291
Eam1104I	CTCTTC	1 cut(s)	282
EarI	CTCTTC	1 cut(s)	282
EciI	GGCGGA	2 cut(s)	173, 432
Eco24I	GRGCYC	2 cut(s)	72, 453
Eco88I	CYCGRG	1 cut(s)	114
EcoT38I	GRGCYC	2 cut(s)	72, 453
Esp3I	CGTCTC	1 cut(s)	117
FaeI	CATG	2 cut(s)	49, 349
FaiI	YATR	3 cut(s)	47, 203, 347
FaqI	GGGAC	1 cut(s)	234
FatI	CATG	2 cut(s)	45, 345
FauI	CCCGC	4 cut(s)	10, 211, 260, 273
Fnu4HI	GCNGC	2 cut(s)	147, 437
FokI	GGATG	3 cut(s)	334, 395, 455
FriOI	GRGCYC	2 cut(s)	72, 453
Fsp4HI	GCNGC	2 cut(s)	147, 437
FspBI	CTAG	1 cut(s)	50
GluI	GCNGC	2 cut(s)	147, 437
HaeIII	GGCC	1 cut(s)	460
HapII	CCGG	4 cut(s)	155, 206, 365, 446
HgaI	GACGC	1 cut(s)	160
Hin1I	GRCGYC	1 cut(s)	152
Hin1II	CATG	2 cut(s)	49, 349
HinfI	GANTC	1 cut(s)	210
HpaII	CCGG	4 cut(s)	155, 206, 365, 446
HphI	GGTGA	1 cut(s)	319
Hpy188I	TCNGA	1 cut(s)	128
Hpy188III	TCNNGA	1 cut(s)	346
Hpy99I	CGWCG	1 cut(s)	154
HpyAV	CCTTC	1 cut(s)	270
HpyCH4III	ACNGT	1 cut(s)	421
HpyCH4IV	ACGT	6 cut(s)	123, 162, 186, 252, 315, 474
HpyCH4V	TGCA	1 cut(s)	235
HpyF10VI	GCNNNNNNNGC	6 cut(s)	76, 146, 155, 392, 442, 457
HpyF3I	CTNAG	1 cut(s)	263
HpySE526I	ACGT	6 cut(s)	123, 162, 186, 252, 315, 474
Hsp92I	GRCGYC	1 cut(s)	152
Hsp92II	CATG	2 cut(s)	49, 349
KroI	GCCGGC	1 cut(s)	154
KroNI	GCCGGC	1 cut(s)	156
Kzo9I	GATC	1 cut(s)	291
LmnI	GCTCC	2 cut(s)	271, 448
LpnPI	CCDG	5 cut(s)	168, 219, 221, 378, 459
Lsp1109I	GCAGC	1 cut(s)	423
LweI	GCATC	2 cut(s)	121, 373
MaeI	CTAG	1 cut(s)	50
MaeII	ACGT	6 cut(s)	123, 162, 186, 252, 315, 474
MalI	GATC	1 cut(s)	293
MbiI	CCGCTC	1 cut(s)	267
MboI	GATC	1 cut(s)	291
MboII	GAAGA	3 cut(s)	19, 53, 299
MhlI	GDGCHC	3 cut(s)	72, 417, 453
MluCI	AATT	2 cut(s)	225, 376
MluI	ACGCGT	1 cut(s)	180
MreI	CGCCGGCG	1 cut(s)	154
MroNI	GCCGGC	1 cut(s)	154
MseI	TTAA	1 cut(s)	228
MslI	CAYNNNNRTG	1 cut(s)	477
MspI	CCGG	4 cut(s)	155, 206, 365, 446
MspR9I	CCNGG	1 cut(s)	207
Mva1269I	GAATGC	1 cut(s)	376
MvnI	CGCG	3 cut(s)	17, 32, 182
MwoI	GCNNNNNNNGC	6 cut(s)	76, 146, 155, 392, 442, 457
NaeI	GCCGGC	1 cut(s)	156
NciI	CCSGG	1 cut(s)	207
NdeII	GATC	1 cut(s)	291
NgoMIV	GCCGGC	1 cut(s)	154
NlaIII	CATG	2 cut(s)	49, 349
NlaIV	GGNNCC	1 cut(s)	450
NspI	RCATGY	1 cut(s)	49
PagI	TCATGA	1 cut(s)	345
PaqCI	CACCTGC	1 cut(s)	226
PctI	GAATGC	1 cut(s)	376
PdiI	GCCGGC	1 cut(s)	156
PfeI	GAWTC	1 cut(s)	210
Pfl23II	CGTACG	2 cut(s)	120, 183
PkrI	GCNGC	2 cut(s)	148, 438
Ppu21I	YACGTR	2 cut(s)	187, 316
Psp1406I	AACGTT	1 cut(s)	252
PspLI	CGTACG	2 cut(s)	120, 183
PspN4I	GGNNCC	1 cut(s)	450
PspPI	GGNCC	1 cut(s)	459
RsaI	GTAC	4 cut(s)	122, 173, 185, 314
RsaNI	GTAC	4 cut(s)	121, 172, 184, 313
RseI	CAYNNNNRTG	1 cut(s)	477
SaqAI	TTAA	1 cut(s)	228
SatI	GCNGC	2 cut(s)	147, 437
Sau3AI	GATC	1 cut(s)	291
Sau96I	GGNCC	1 cut(s)	459
ScrFI	CCNGG	1 cut(s)	207
SduI	GDGCHC	3 cut(s)	72, 417, 453
SetI	ASST	8 cut(s)	126, 165, 189, 240, 255, 318, 438, 477
SfaNI	GCATC	2 cut(s)	121, 373
SgrAI	CRCCGGYG	1 cut(s)	154
SmiMI	CAYNNNNRTG	1 cut(s)	477
Sse9I	AATT	2 cut(s)	225, 376
SsiI	CCGC	9 cut(s)	17, 32, 146, 158, 218, 267, 280, 395, 443
SspMI	CTAG	1 cut(s)	50
StyD4I	CCNGG	1 cut(s)	205
TaaI	ACNGT	1 cut(s)	421
TaiI	ACGT	6 cut(s)	126, 165, 189, 255, 318, 477
TaqI	TCGA	1 cut(s)	213
TasI	AATT	2 cut(s)	225, 376
TauI	GCSGC	1 cut(s)	149
TfiI	GAWTC	1 cut(s)	210
Tru1I	TTAA	1 cut(s)	228
Tru9I	TTAA	1 cut(s)	228
TscAI	CASTG	1 cut(s)	424
TseI	GCWGC	1 cut(s)	436
TspDTI	ATGAA	1 cut(s)	334
TspRI	CASTG	1 cut(s)	424
XceI	RCATGY	1 cut(s)	49
XspI	CTAG	1 cut(s)	50

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.