AT5G12380

Annexin

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
OG0001318
Physical Location & Seq
Forward (+)
4009168 .. 4010687
1520 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G12380.1

Sequence Viewer

Length: 951 bp
ATGGCCACCATTGTTTCTCCTCCACATTTCTCCCCTGTCGAAGACGCTGAAAACATCAAGGCGGCTTGTCAAGGATGGGGAACCAATGAAAATGCCATCATCTCGATCTTAGGACACCGGAATTTGTTCCAGAGGAAGCTCATAAGACAAGCTTACCAGGAGATTTACCATGAGGATCTCATTCACCAGCTCAAATCTGAGCTCTCTGGCAATTTTGAGAGAGCTATTTGCTTGTGGGTCTTGGATCCTCCAGAGAGAGATGCTCTCTTGGCTAACTTGGCTCTTCAAAAGCCTATTCCTGACTACAAGGTTCTTGTCGAAATTGCCTGCATGAGATCCCCTGAAGATATGTTAGCTGCTAGACGTGCTTACCGTTGCCTCTACAAGCATTCTCTTGAGGAAGACTTGGCCTCCCGTACTATTGGCGACATCAGGAGACTCTTGGTTGCAATGGTGTCTGCTTATAAATATGATGGAGAAGAAATTGATGAGATGCTGGCGCAATCAGAGGCTGCGATTCTTCATGATGAAATCCTTGGTAAGGCTGTTGATCACGAAGAAACGATCAGGGTGTTAAGTACAAGGAGCAGCATGCAGCTTAGCGCAATCTTCAACCGCTACAAGGATATATATGGCACATCGATCACTAAGGATCTCCTCAATCACCCTACAAATGAGTACCTGAGTGCACTACGTGCAGCCATCAGGTGCATCAAAAACCCTACCCGGTATTATGCAAAGGTTTTGCGCAATTCAATCAACACGGTGGGGACTGATGAAGATGCTCTGAACCGTGTGATTGTCACACGAGCAGAAAAGGACCTGACGAATATAACTGGGCTGTACTTTAAGAGGAACAATGTGAGTCTCGATCAAGCTATAGCAAAAGAGACATCAGGGGACTACAAGGCCTTTCTTCTAGCTTTGCTAGGACATGGAAAACAACTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0001101 GO:0006950 GO:0006970 GO:0008150 GO:0009266 GO:0009408 GO:0009409 GO:0009414 GO:0009415 GO:0009628 GO:0009651 GO:0010035 GO:0042221 GO:0050896 GO:1901700
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Annexin

Protein Analysis

316

Amino Acids

35.76

Weight (kDa)

6.33

Isoelectric Point (pI)

44.22

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Annexin PF00191 15 - 78 2e-22 Annexin
Annexin PF00191 87 - 151 2.7e-11 Annexin
Annexin PF00191 170 - 230 1.1e-09 Annexin
Annexin PF00191 244 - 309 4.1e-16 Annexin
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 465
Acc16I TGCGCA 1 cut(s) 749
AciI CCGC 2 cut(s) 62, 616
AclWI GGATC 5 cut(s) 183, 239, 252, 330, 660
AcoI YGGCCR 1 cut(s) 3
AcsI RAATTY 1 cut(s) 121
AcuI CTGAAG 1 cut(s) 363
AdeI CACNNNGTG 1 cut(s) 695
AfaI GTAC 4 cut(s) 418, 580, 680, 845
AfiI CCNNNNNNNGG 2 cut(s) 541, 622
AgsI TTSAA 3 cut(s) 287, 613, 756
AjiI CACGTC 1 cut(s) 365
AjnI CCWGG 1 cut(s) 156
AluBI AGCT 9 cut(s) 139, 152, 190, 202, 224, 356, 598, 878, 923
AluI AGCT 9 cut(s) 139, 152, 190, 202, 224, 356, 598, 878, 923
Alw21I GWGCWC 2 cut(s) 204, 691
Alw26I GTCTC 3 cut(s) 430, 872, 884
Alw44I GTGCAC 1 cut(s) 687
AlwI GGATC 5 cut(s) 183, 239, 252, 330, 660
AlwNI CAGNNNCTG 1 cut(s) 512
AoxI GGCC 3 cut(s) 3, 408, 909
ApaLI GTGCAC 1 cut(s) 687
ApeKI GCWGC 5 cut(s) 356, 512, 588, 595, 698
ApoI RAATTY 1 cut(s) 121
Asp700I GAANNNNTTC 1 cut(s) 125
AspLEI GCGC 3 cut(s) 502, 605, 750
AspS9I GGNCC 1 cut(s) 820
AsuC2I CCSGG 1 cut(s) 727
AsuHPI GGTGA 2 cut(s) 176, 656
AvaII GGWCC 1 cut(s) 820
BaeGI GKGCMC 1 cut(s) 691
BalI TGGCCA 1 cut(s) 5
BamHI GGATCC 1 cut(s) 244
BanII GRGCYC 1 cut(s) 204
BauI CACGAG 1 cut(s) 807
BbsI GAAGAC 2 cut(s) 48, 408
Bbv12I GWGCWC 2 cut(s) 204, 691
BbvI GCAGC 5 cut(s) 343, 499, 600, 607, 710
BccI CCATC 4 cut(s) 69, 104, 467, 710
BciT130I CCWGG 1 cut(s) 158
BclI TGATCA 1 cut(s) 550
BcnI CCSGG 1 cut(s) 727
BcoDI GTCTC 3 cut(s) 430, 872, 884
BfaI CTAG 3 cut(s) 360, 920, 929
BfmI CTRYAG 1 cut(s) 879
BisI GCNGC 6 cut(s) 63, 357, 513, 589, 596, 699
BlpI GCTNAGC 1 cut(s) 599
BlsI GCNGC 6 cut(s) 64, 358, 514, 590, 597, 700
Bme1390I CCNGG 2 cut(s) 158, 727
Bme18I GGWCC 1 cut(s) 820
BmgBI CACGTC 1 cut(s) 365
BmgT120I GGNCC 1 cut(s) 820
BmiI GGNNCC 2 cut(s) 82, 246
BmrFI CCNGG 2 cut(s) 158, 727
BmrI ACTGGG 1 cut(s) 846
BmsI GCATC 4 cut(s) 250, 483, 720, 772
BmuI ACTGGG 1 cut(s) 846
BpiI GAAGAC 2 cut(s) 48, 408
BplI GAGNNNNNCTC 4 cut(s) 247, 279, 249, 281
BpmI CTGGAG 1 cut(s) 234
Bpu1102I GCTNAGC 1 cut(s) 599
BpuEI CTTGAG 1 cut(s) 416
BpuMI CCSGG 1 cut(s) 727
Bsa29I ATCGAT 1 cut(s) 641
BsaAI YACGTR 1 cut(s) 695
BsaJI CCNNGG 1 cut(s) 535
BsaWI WCCGGW 1 cut(s) 117
BsaXI ACNNNNNCTCC 2 cut(s) 395, 425
Bsc4I CCNNNNNNNGG 2 cut(s) 541, 622
Bse1I ACTGG 1 cut(s) 841
Bse3DI GCAATG 1 cut(s) 456
BseBI CCWGG 1 cut(s) 158
BseCI ATCGAT 1 cut(s) 641
BseDI CCNNGG 1 cut(s) 535
BseGI GGATG 1 cut(s) 80
BseLI CCNNNNNNNGG 2 cut(s) 541, 622
BseMI GCAATG 1 cut(s) 456
BseMII CTCAG 2 cut(s) 189, 674
BseNI ACTGG 1 cut(s) 841
BseRI GAGGAG 2 cut(s) 9, 647
BseSI GKGCMC 1 cut(s) 691
BseXI GCAGC 5 cut(s) 343, 499, 600, 607, 710
BsgI GTGCAG 1 cut(s) 717
BshFI GGCC 3 cut(s) 5, 410, 911
BshVI ATCGAT 1 cut(s) 641
BsiHKAI GWGCWC 2 cut(s) 204, 691
BsiSI CCGG 2 cut(s) 118, 727
BslFI GGGAC 2 cut(s) 784, 914
BslI CCNNNNNNNGG 2 cut(s) 541, 622
BsmAI GTCTC 3 cut(s) 430, 872, 884
BsmFI GGGAC 2 cut(s) 784, 914
BsmI GAATGC 1 cut(s) 388
BsnI GGCC 3 cut(s) 5, 410, 911
Bsp1286I GDGCHC 2 cut(s) 204, 691
Bsp143I GATC 9 cut(s) 105, 175, 244, 335, 550, 564, 642, 652, 871
Bsp1720I GCTNAGC 1 cut(s) 599
BspACI CCGC 2 cut(s) 62, 616
BspANI GGCC 3 cut(s) 5, 410, 911
BspCNI CTCAG 2 cut(s) 190, 675
BspDI ATCGAT 1 cut(s) 641
BspHI TCATGA 1 cut(s) 523
BspLI GGNNCC 2 cut(s) 82, 246
BspPI GGATC 5 cut(s) 183, 239, 252, 330, 660
BspQI GCTCTTC 1 cut(s) 288
BsrDI GCAATG 1 cut(s) 456
BsrI ACTGG 1 cut(s) 841
BssECI CCNNGG 1 cut(s) 535
BssMI GATC 9 cut(s) 105, 175, 244, 335, 550, 564, 642, 652, 871
BssSI CACGAG 1 cut(s) 807
BssT1I CCWWGG 1 cut(s) 535
Bst2BI CACGAG 1 cut(s) 807
Bst2UI CCWGG 1 cut(s) 158
Bst4CI ACNGT 3 cut(s) 374, 766, 794
Bst6I CTCTTC 1 cut(s) 288
BstAPI GCANNNNNTGC 1 cut(s) 695
BstBAI YACGTR 1 cut(s) 695
BstC8I GCNNGC 3 cut(s) 328, 498, 593
BstDEI CTNAG 5 cut(s) 109, 198, 599, 648, 683
BstENI CCTNNNNNAGG 1 cut(s) 539
BstF5I GGATG 1 cut(s) 80
BstHHI GCGC 3 cut(s) 502, 605, 750
BstKTI GATC 9 cut(s) 108, 178, 247, 338, 553, 567, 645, 655, 874
BstMAI GTCTC 3 cut(s) 430, 872, 884
BstMBI GATC 9 cut(s) 105, 175, 244, 335, 550, 564, 642, 652, 871
BstMWI GCNNNNNNNGC 4 cut(s) 269, 278, 365, 695
BstNI CCWGG 1 cut(s) 158
BstNSI RCATGY 1 cut(s) 595
BstSCI CCNGG 2 cut(s) 156, 725
BstSFI CTRYAG 1 cut(s) 879
BstSLI GKGCMC 1 cut(s) 691
BstV1I GCAGC 5 cut(s) 343, 499, 600, 607, 710
BstV2I GAAGAC 2 cut(s) 48, 408
BstX2I RGATCY 4 cut(s) 175, 244, 335, 652
BstYI RGATCY 4 cut(s) 175, 244, 335, 652
Bsu15I ATCGAT 1 cut(s) 641
BsuRI GGCC 3 cut(s) 5, 410, 911
BsuTUI ATCGAT 1 cut(s) 641
BtrI CACGTC 1 cut(s) 365
BtsCI GGATG 1 cut(s) 80
Cac8I GCNNGC 3 cut(s) 328, 498, 593
CaiI CAGNNNCTG 1 cut(s) 512
CciI TCATGA 1 cut(s) 523
CfoI GCGC 3 cut(s) 502, 605, 750
Cfr13I GGNCC 1 cut(s) 820
ClaI ATCGAT 1 cut(s) 641
CseI GACGC 1 cut(s) 53
Csp6I GTAC 4 cut(s) 417, 579, 679, 844
CviAII CATG 5 cut(s) 170, 331, 524, 592, 935
CviQI GTAC 4 cut(s) 417, 579, 679, 844
DdeI CTNAG 5 cut(s) 109, 198, 599, 648, 683
DpnI GATC 9 cut(s) 107, 177, 246, 337, 552, 566, 644, 654, 873
DpnII GATC 9 cut(s) 105, 175, 244, 335, 550, 564, 642, 652, 871
DraIII CACNNNGTG 1 cut(s) 695
EaeI YGGCCR 1 cut(s) 3
Eam1104I CTCTTC 1 cut(s) 288
EarI CTCTTC 1 cut(s) 288
Ecl136II GAGCTC 1 cut(s) 202
Eco130I CCWWGG 1 cut(s) 535
Eco147I AGGCCT 1 cut(s) 911
Eco24I GRGCYC 1 cut(s) 204
Eco47I GGWCC 1 cut(s) 820
Eco53kI GAGCTC 1 cut(s) 202
Eco57I CTGAAG 1 cut(s) 363
EcoICRI GAGCTC 1 cut(s) 202
EcoNI CCTNNNNNAGG 1 cut(s) 539
EcoO109I RGGNCCY 1 cut(s) 820
EcoRII CCWGG 1 cut(s) 156
EcoT14I CCWWGG 1 cut(s) 535
EcoT38I GRGCYC 1 cut(s) 204
ErhI CCWWGG 1 cut(s) 535
FaeI CATG 5 cut(s) 173, 334, 527, 595, 938
FalI AAGNNNNNCTT 2 cut(s) 136, 168
FaqI GGGAC 2 cut(s) 784, 914
FatI CATG 5 cut(s) 169, 330, 523, 591, 934
FbaI TGATCA 1 cut(s) 550
Fnu4HI GCNGC 6 cut(s) 63, 357, 513, 589, 596, 699
FokI GGATG 1 cut(s) 87
FriOI GRGCYC 1 cut(s) 204
Fsp4HI GCNGC 6 cut(s) 63, 357, 513, 589, 596, 699
FspBI CTAG 3 cut(s) 360, 920, 929
FspI TGCGCA 1 cut(s) 749
GlaI GCGC 3 cut(s) 501, 604, 749
GluI GCNGC 6 cut(s) 63, 357, 513, 589, 596, 699
GsuI CTGGAG 1 cut(s) 234
HaeIII GGCC 3 cut(s) 5, 410, 911
HapII CCGG 2 cut(s) 118, 727
HgaI GACGC 1 cut(s) 53
HhaI GCGC 3 cut(s) 502, 605, 750
Hin1II CATG 5 cut(s) 173, 334, 527, 595, 938
Hin6I GCGC 3 cut(s) 500, 603, 748
HinP1I GCGC 3 cut(s) 500, 603, 748
HindIII AAGCTT 1 cut(s) 150
HinfI GANTC 3 cut(s) 438, 517, 865
HpaII CCGG 2 cut(s) 118, 727
HphI GGTGA 2 cut(s) 176, 656
Hpy166II GTNNAC 1 cut(s) 689
Hpy188I TCNGA 3 cut(s) 199, 508, 789
Hpy188III TCNNGA 9 cut(s) 103, 130, 251, 299, 395, 433, 524, 554, 869
Hpy8I GTNNAC 1 cut(s) 689
HpyCH4III ACNGT 3 cut(s) 374, 766, 794
HpyCH4IV ACGT 2 cut(s) 364, 694
HpyCH4V TGCA 7 cut(s) 330, 449, 595, 689, 698, 711, 737
HpyF10VI GCNNNNNNNGC 4 cut(s) 269, 278, 365, 695
HpyF3I CTNAG 5 cut(s) 109, 198, 599, 648, 683
HpySE526I ACGT 2 cut(s) 364, 694
Hsp92II CATG 5 cut(s) 173, 334, 527, 595, 938
HspAI GCGC 3 cut(s) 500, 603, 748
Ksp22I TGATCA 1 cut(s) 550
Kzo9I GATC 9 cut(s) 105, 175, 244, 335, 550, 564, 642, 652, 871
LguI GCTCTTC 1 cut(s) 288
LmnI GCTCC 1 cut(s) 585
Lsp1109I GCAGC 5 cut(s) 343, 499, 600, 607, 710
LweI GCATC 4 cut(s) 250, 483, 720, 772
MaeI CTAG 3 cut(s) 360, 920, 929
MaeII ACGT 2 cut(s) 364, 694
MaeIII GTNAC 1 cut(s) 802
MalI GATC 9 cut(s) 107, 177, 246, 337, 552, 566, 644, 654, 873
MboI GATC 9 cut(s) 105, 175, 244, 335, 550, 564, 642, 652, 871
MflI RGATCY 4 cut(s) 175, 244, 335, 652
MhlI GDGCHC 2 cut(s) 204, 691
MlsI TGGCCA 1 cut(s) 5
MluCI AATT 5 cut(s) 121, 211, 321, 483, 751
MluNI TGGCCA 1 cut(s) 5
MlyI GAGTC 2 cut(s) 432, 874
Mox20I TGGCCA 1 cut(s) 5
MroXI GAANNNNTTC 1 cut(s) 125
MscI TGGCCA 1 cut(s) 5
MseI TTAA 2 cut(s) 575, 849
Msp20I TGGCCA 1 cut(s) 5
MspI CCGG 2 cut(s) 118, 727
MspR9I CCNGG 2 cut(s) 158, 727
Mva1269I GAATGC 1 cut(s) 388
MvaI CCWGG 1 cut(s) 158
MwoI GCNNNNNNNGC 4 cut(s) 269, 278, 365, 695
NciI CCSGG 1 cut(s) 727
NdeII GATC 9 cut(s) 105, 175, 244, 335, 550, 564, 642, 652, 871
NlaIII CATG 5 cut(s) 173, 334, 527, 595, 938
NlaIV GGNNCC 2 cut(s) 82, 246
NmuCI GTSAC 1 cut(s) 802
NsbI TGCGCA 1 cut(s) 749
NspI RCATGY 1 cut(s) 595
PaeI GCATGC 1 cut(s) 595
PagI TCATGA 1 cut(s) 523
PceI AGGCCT 1 cut(s) 911
PciSI GCTCTTC 1 cut(s) 288
PcsI WCGNNNNNNNCGW 1 cut(s) 370
PctI GAATGC 1 cut(s) 388
PdmI GAANNNNTTC 1 cut(s) 125
PfeI GAWTC 1 cut(s) 517
PkrI GCNGC 6 cut(s) 64, 358, 514, 590, 597, 700
PleI GAGTC 2 cut(s) 432, 873
PpsI GAGTC 2 cut(s) 432, 873
Ppu21I YACGTR 1 cut(s) 695
PpuMI RGGWCCY 1 cut(s) 820
PsiI TTATAA 1 cut(s) 465
Psp124BI GAGCTC 1 cut(s) 204
Psp5II RGGWCCY 1 cut(s) 820
Psp6I CCWGG 1 cut(s) 156
PspGI CCWGG 1 cut(s) 156
PspN4I GGNNCC 2 cut(s) 82, 246
PspPI GGNCC 1 cut(s) 820
PspPPI RGGWCCY 1 cut(s) 820
PstNI CAGNNNCTG 1 cut(s) 512
PsuI RGATCY 4 cut(s) 175, 244, 335, 652
RsaI GTAC 4 cut(s) 418, 580, 680, 845
RsaNI GTAC 4 cut(s) 417, 579, 679, 844
SacI GAGCTC 1 cut(s) 204
SapI GCTCTTC 1 cut(s) 288
SaqAI TTAA 2 cut(s) 575, 849
SatI GCNGC 6 cut(s) 63, 357, 513, 589, 596, 699
Sau3AI GATC 9 cut(s) 105, 175, 244, 335, 550, 564, 642, 652, 871
Sau96I GGNCC 1 cut(s) 820
SchI GAGTC 2 cut(s) 432, 874
ScrFI CCNGG 2 cut(s) 158, 727
SduI GDGCHC 2 cut(s) 204, 691
SfaNI GCATC 4 cut(s) 250, 483, 720, 772
SfcI CTRYAG 1 cut(s) 879
SinI GGWCC 1 cut(s) 820
SmlI CTYRAG 1 cut(s) 395
SmoI CTYRAG 1 cut(s) 395
SphI GCATGC 1 cut(s) 595
Sse9I AATT 5 cut(s) 121, 211, 321, 483, 751
SseBI AGGCCT 1 cut(s) 911
SsiI CCGC 2 cut(s) 62, 616
SspMI CTAG 3 cut(s) 360, 920, 929
SstI GAGCTC 1 cut(s) 204
StuI AGGCCT 1 cut(s) 911
StyD4I CCNGG 2 cut(s) 156, 725
StyI CCWWGG 1 cut(s) 535
TaaI ACNGT 3 cut(s) 374, 766, 794
TaiI ACGT 2 cut(s) 367, 697
TaqI TCGA 5 cut(s) 39, 104, 318, 641, 870
TasI AATT 5 cut(s) 121, 211, 321, 483, 751
TatI WGTACW 2 cut(s) 578, 843
TauI GCSGC 1 cut(s) 65
TfiI GAWTC 1 cut(s) 517
Tru1I TTAA 2 cut(s) 575, 849
Tru9I TTAA 2 cut(s) 575, 849
TseFI GTSAC 1 cut(s) 802
TseI GCWGC 5 cut(s) 356, 512, 588, 595, 698
Tsp45I GTSAC 1 cut(s) 802
TspDTI ATGAA 4 cut(s) 102, 512, 543, 792
VneI GTGCAC 1 cut(s) 687
VpaK11BI GGWCC 1 cut(s) 820
XagI CCTNNNNNAGG 1 cut(s) 539
XapI RAATTY 1 cut(s) 121
XceI RCATGY 1 cut(s) 595
XmnI GAANNNNTTC 1 cut(s) 125
XspI CTAG 3 cut(s) 360, 920, 929
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.