Rroxscaffold_4G00327560

Annexin-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000004
OG0001318
Physical Location & Seq
Forward (+)
60309795 .. 60312176
2382 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_4G00327560.1

Sequence Viewer

Length: 945 bp
ATGGCATCCCTTATTACTCCAGATCAGTTCTCTGCTAACCAAGATGCCGAGGCTCTCCGAAAGGCGTGTCAAGGATGGGGGACTAATGAGAAGGTCATCATCTCCATACTGGGTCATAGAAGTGCAACTCAAAGAAAAGAAATCAGGGTCGCTTATGAACAACTTTATCAAGAAGATCTTCTCAAGCGCCTTGAATCTGAGCTCTCTGGTGATTTTGAGAGAGCGGTGTACCGTTGGACATTGGATCCAGCTGATCGTGATGCTGTTTTGGCTAATCTGGCCATTAAGAAACCTGATGAGACTGACTACAATGTCATCATCGAAATCTCCAGTGTTCGGTGTCCTGAAGAGCTTCTAGCTGTAAGAAAAGCTTACCAACTTCGCTACAGGTGCTCCTTGGAAGAAGATCTAGCTCAACACACTGCTGGTGATATCCGCAAGCTTTTGGTTGCTTTGGTGACTGCTTACCGTTATGACGGTAATGAGATCAATGAAAAGTTGGCAAGTTCAGAAGCTAATATTCTTCACGATGCAATCAAAGAGAAGTGTTTTAATCATGAAGAAATTATTAGGATCCTGAGTACAAGGAGCAAGACACAGCTCATGGCTACATTCAACAAATACAGAGATGACCATGGCAGTTCTATCAGCAAGAATTTATTGGGGGATGGGACTAGTGATTTCCAGAAGGCATTACACGTGGCCATTCGATGCCTCAATGACCCCAAGAAGTACTTTGAGAAGGTACTACGCAATGCCATCATAGGGACAGGGACCGATGAGAATGCTCTCACTCGGGTGATTGTGACAAGGGCAGAGAGGGACTTGAGGGACATCATGGTGGTTTACTACAAGAAGAACAGTGTTCCTCTTGAACAGGCTGTGGCCCAAGAAACTTCAGGGGACTACAAAACCTTCCTCCTTACTCTGTTGGGAAAGAACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Annexin

Protein Analysis

314

Amino Acids

35.69

Weight (kDa)

6.35

Isoelectric Point (pI)

32.21

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Annexin PF00191 14 - 76 5.8e-24 Annexin
Annexin PF00191 87 - 152 3.2e-12 Annexin
Annexin PF00191 171 - 233 1.6e-12 Annexin
Annexin PF00191 245 - 310 4.2e-16 Annexin
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 311
AccBSI CCGCTC 1 cut(s) 224
AciI CCGC 2 cut(s) 224, 436
AclWI GGATC 4 cut(s) 239, 252, 568, 581
AcoI YGGCCR 2 cut(s) 279, 702
AcsI RAATTY 1 cut(s) 655
AcuI CTGAAG 2 cut(s) 366, 882
AcvI CACGTG 1 cut(s) 700
AfaI GTAC 4 cut(s) 230, 583, 734, 747
AfiI CCNNNNNNNGG 2 cut(s) 336, 765
AflIII ACRYGT 1 cut(s) 697
AgsI TTSAA 3 cut(s) 194, 616, 875
AhlI ACTAGT 1 cut(s) 674
AleI CACNNNNGTG 1 cut(s) 797
AluBI AGCT 9 cut(s) 202, 251, 352, 359, 371, 413, 442, 515, 601
AluI AGCT 9 cut(s) 202, 251, 352, 359, 371, 413, 442, 515, 601
Alw21I GWGCWC 2 cut(s) 204, 395
Alw26I GTCTC 1 cut(s) 293
AlwI GGATC 4 cut(s) 239, 252, 568, 581
Ama87I CYCGRG 1 cut(s) 795
AoxI GGCC 3 cut(s) 279, 702, 885
ApoI RAATTY 1 cut(s) 655
ArsI GACNNNNNNTTYG 2 cut(s) 52, 84
Asp700I GAANNNNTTC 2 cut(s) 177, 351
AspLEI GCGC 1 cut(s) 189
AspS9I GGNCC 2 cut(s) 774, 886
AsuHPI GGTGA 4 cut(s) 221, 440, 469, 811
AvaI CYCGRG 1 cut(s) 795
AvaII GGWCC 1 cut(s) 774
BalI TGGCCA 2 cut(s) 281, 704
BamHI GGATCC 2 cut(s) 244, 573
BanII GRGCYC 1 cut(s) 204
BbrPI CACGTG 1 cut(s) 700
Bbv12I GWGCWC 2 cut(s) 204, 395
BccI CCATC 3 cut(s) 69, 662, 767
BcgI CGANNNNNNTGC 2 cut(s) 767, 801
BcoDI GTCTC 1 cut(s) 293
BcuI ACTAGT 1 cut(s) 674
BfaI CTAG 3 cut(s) 356, 410, 675
BfmI CTRYAG 1 cut(s) 385
BfoI RGCGCY 1 cut(s) 190
BglII AGATCT 2 cut(s) 175, 406
BmcAI AGTACT 1 cut(s) 734
Bme18I GGWCC 1 cut(s) 774
BmeT110I CYCGRG 1 cut(s) 795
BmgT120I GGNCC 2 cut(s) 774, 886
BmiI GGNNCC 3 cut(s) 246, 575, 775
BmrI ACTGGG 1 cut(s) 119
BmsI GCATC 5 cut(s) 14, 34, 250, 520, 701
BmuI ACTGGG 1 cut(s) 119
BpmI CTGGAG 1 cut(s) 313
BpuEI CTTGAG 2 cut(s) 167, 847
BsaAI YACGTR 1 cut(s) 700
BsaJI CCNNGG 3 cut(s) 48, 396, 634
BsaXI ACNNNNNCTCC 2 cut(s) 377, 407
Bsc4I CCNNNNNNNGG 2 cut(s) 336, 765
Bse1I ACTGG 2 cut(s) 114, 330
Bse3DI GCAATG 1 cut(s) 760
BseDI CCNNGG 3 cut(s) 48, 396, 634
BseGI GGATG 3 cut(s) 5, 80, 673
BseLI CCNNNNNNNGG 2 cut(s) 336, 765
BseMI GCAATG 1 cut(s) 760
BseMII CTCAG 2 cut(s) 189, 569
BseNI ACTGG 2 cut(s) 114, 330
BshFI GGCC 3 cut(s) 281, 704, 887
BsiHKAI GWGCWC 2 cut(s) 204, 395
BsiHKCI CYCGRG 1 cut(s) 795
BslFI GGGAC 7 cut(s) 94, 685, 781, 787, 836, 845, 917
BslI CCNNNNNNNGG 2 cut(s) 336, 765
BsmAI GTCTC 1 cut(s) 293
BsmFI GGGAC 7 cut(s) 94, 685, 781, 787, 836, 845, 917
BsmI GAATGC 1 cut(s) 790
BsnI GGCC 3 cut(s) 281, 704, 887
BsoBI CYCGRG 1 cut(s) 795
Bsp1286I GDGCHC 2 cut(s) 204, 395
Bsp143I GATC 7 cut(s) 22, 175, 244, 253, 406, 486, 573
Bsp19I CCATGG 1 cut(s) 634
BspACI CCGC 2 cut(s) 224, 436
BspANI GGCC 3 cut(s) 281, 704, 887
BspCNI CTCAG 2 cut(s) 190, 570
BspHI TCATGA 1 cut(s) 556
BspLI GGNNCC 3 cut(s) 246, 575, 775
BspPI GGATC 4 cut(s) 239, 252, 568, 581
BspQI GCTCTTC 1 cut(s) 342
BsrBI CCGCTC 1 cut(s) 224
BsrDI GCAATG 1 cut(s) 760
BsrI ACTGG 2 cut(s) 114, 330
BssECI CCNNGG 3 cut(s) 48, 396, 634
BssMI GATC 7 cut(s) 22, 175, 244, 253, 406, 486, 573
BssT1I CCWWGG 2 cut(s) 396, 634
Bst4CI ACNGT 4 cut(s) 233, 470, 479, 863
Bst6I CTCTTC 1 cut(s) 342
BstBAI YACGTR 1 cut(s) 700
BstC8I GCNNGC 1 cut(s) 440
BstDEI CTNAG 2 cut(s) 198, 578
BstDSI CCRYGG 1 cut(s) 634
BstF5I GGATG 3 cut(s) 5, 80, 673
BstH2I RGCGCY 1 cut(s) 190
BstHHI GCGC 1 cut(s) 189
BstKTI GATC 7 cut(s) 25, 178, 247, 256, 409, 489, 576
BstMAI GTCTC 1 cut(s) 293
BstMBI GATC 7 cut(s) 22, 175, 244, 253, 406, 486, 573
BstMWI GCNNNNNNNGC 3 cut(s) 269, 278, 390
BstSFI CTRYAG 1 cut(s) 385
BstX2I RGATCY 4 cut(s) 175, 244, 406, 573
BstYI RGATCY 4 cut(s) 175, 244, 406, 573
BsuRI GGCC 3 cut(s) 281, 704, 887
BtgI CCRYGG 1 cut(s) 634
BtsCI GGATG 3 cut(s) 5, 80, 673
BtsI GCAGTG 1 cut(s) 420
BtsIMutI CAGTG 3 cut(s) 337, 420, 868
Cac8I GCNNGC 1 cut(s) 440
CciI TCATGA 1 cut(s) 556
CfoI GCGC 1 cut(s) 189
Cfr13I GGNCC 2 cut(s) 774, 886
Csp6I GTAC 4 cut(s) 229, 582, 733, 746
CviAII CATG 4 cut(s) 557, 604, 635, 838
CviQI GTAC 4 cut(s) 229, 582, 733, 746
DdeI CTNAG 2 cut(s) 198, 578
DpnI GATC 7 cut(s) 24, 177, 246, 255, 408, 488, 575
DpnII GATC 7 cut(s) 22, 175, 244, 253, 406, 486, 573
DrdI GACNNNNNNGTC 1 cut(s) 311
DseDI GACNNNNNNGTC 1 cut(s) 311
EaeI YGGCCR 2 cut(s) 279, 702
Eam1104I CTCTTC 1 cut(s) 342
EarI CTCTTC 1 cut(s) 342
Ecl136II GAGCTC 1 cut(s) 202
Eco130I CCWWGG 2 cut(s) 396, 634
Eco24I GRGCYC 1 cut(s) 204
Eco32I GATATC 1 cut(s) 433
Eco47I GGWCC 1 cut(s) 774
Eco53kI GAGCTC 1 cut(s) 202
Eco57I CTGAAG 2 cut(s) 366, 882
Eco72I CACGTG 1 cut(s) 700
Eco88I CYCGRG 1 cut(s) 795
EcoICRI GAGCTC 1 cut(s) 202
EcoRV GATATC 1 cut(s) 433
EcoT14I CCWWGG 2 cut(s) 396, 634
EcoT38I GRGCYC 1 cut(s) 204
ErhI CCWWGG 2 cut(s) 396, 634
FaeI CATG 4 cut(s) 560, 607, 638, 841
FaiI YATR 9 cut(s) 107, 117, 156, 474, 558, 605, 636, 764, 839
FalI AAGNNNNNCTT 6 cut(s) 162, 194, 355, 387, 719, 751
FaqI GGGAC 7 cut(s) 94, 685, 781, 787, 836, 845, 917
FatI CATG 4 cut(s) 556, 603, 634, 837
FokI GGATG 2 cut(s) 87, 680
FriOI GRGCYC 1 cut(s) 204
FspBI CTAG 3 cut(s) 356, 410, 675
GlaI GCGC 1 cut(s) 188
GsuI CTGGAG 1 cut(s) 313
HaeII RGCGCY 1 cut(s) 190
HaeIII GGCC 3 cut(s) 281, 704, 887
HhaI GCGC 1 cut(s) 189
Hin1II CATG 4 cut(s) 560, 607, 638, 841
Hin6I GCGC 1 cut(s) 187
HinP1I GCGC 1 cut(s) 187
HindIII AAGCTT 2 cut(s) 369, 440
HinfI GANTC 1 cut(s) 194
HphI GGTGA 4 cut(s) 221, 440, 469, 811
Hpy166II GTNNAC 2 cut(s) 229, 847
Hpy188I TCNGA 3 cut(s) 59, 199, 511
Hpy188III TCNNGA 9 cut(s) 20, 170, 257, 344, 527, 557, 577, 685, 872
Hpy8I GTNNAC 2 cut(s) 229, 847
HpyAV CCTTC 4 cut(s) 85, 682, 736, 925
HpyCH4III ACNGT 4 cut(s) 233, 470, 479, 863
HpyCH4IV ACGT 1 cut(s) 699
HpyCH4V TGCA 2 cut(s) 125, 533
HpyF10VI GCNNNNNNNGC 3 cut(s) 269, 278, 390
HpyF3I CTNAG 2 cut(s) 198, 578
HpySE526I ACGT 1 cut(s) 699
Hsp92II CATG 4 cut(s) 560, 607, 638, 841
HspAI GCGC 1 cut(s) 187
Kzo9I GATC 7 cut(s) 22, 175, 244, 253, 406, 486, 573
LguI GCTCTTC 1 cut(s) 342
LmnI GCTCC 2 cut(s) 398, 588
LweI GCATC 5 cut(s) 14, 34, 250, 520, 701
MaeI CTAG 3 cut(s) 356, 410, 675
MaeII ACGT 1 cut(s) 699
MaeIII GTNAC 2 cut(s) 457, 805
MalI GATC 7 cut(s) 24, 177, 246, 255, 408, 488, 575
MbiI CCGCTC 1 cut(s) 224
MboI GATC 7 cut(s) 22, 175, 244, 253, 406, 486, 573
MboII GAAGA 8 cut(s) 170, 185, 359, 413, 416, 515, 572, 868
MflI RGATCY 4 cut(s) 175, 244, 406, 573
MhlI GDGCHC 2 cut(s) 204, 395
MlsI TGGCCA 2 cut(s) 281, 704
MluCI AATT 2 cut(s) 564, 655
MluNI TGGCCA 2 cut(s) 281, 704
MmeI TCCRAC 1 cut(s) 215
MnlI CCTC 6 cut(s) 43, 725, 813, 822, 879, 929
Mox20I TGGCCA 2 cut(s) 281, 704
MroXI GAANNNNTTC 2 cut(s) 177, 351
MscI TGGCCA 2 cut(s) 281, 704
MseI TTAA 2 cut(s) 285, 552
MslI CAYNNNNRTG 3 cut(s) 120, 797, 839
Msp20I TGGCCA 2 cut(s) 281, 704
MspA1I CMGCKG 1 cut(s) 251
Mva1269I GAATGC 1 cut(s) 790
MwoI GCNNNNNNNGC 3 cut(s) 269, 278, 390
NcoI CCATGG 1 cut(s) 634
NdeII GATC 7 cut(s) 22, 175, 244, 253, 406, 486, 573
NlaIII CATG 4 cut(s) 560, 607, 638, 841
NlaIV GGNNCC 3 cut(s) 246, 575, 775
NmeAIII GCCGAG 1 cut(s) 73
NmuCI GTSAC 2 cut(s) 457, 805
OliI CACNNNNGTG 1 cut(s) 797
PagI TCATGA 1 cut(s) 556
PciSI GCTCTTC 1 cut(s) 342
PctI GAATGC 1 cut(s) 790
PdmI GAANNNNTTC 2 cut(s) 177, 351
PfeI GAWTC 1 cut(s) 194
PmaCI CACGTG 1 cut(s) 700
PmlI CACGTG 1 cut(s) 700
Ppu21I YACGTR 1 cut(s) 700
Psp124BI GAGCTC 1 cut(s) 204
PspCI CACGTG 1 cut(s) 700
PspN4I GGNNCC 3 cut(s) 246, 575, 775
PspPI GGNCC 2 cut(s) 774, 886
PsuI RGATCY 4 cut(s) 175, 244, 406, 573
PvuII CAGCTG 1 cut(s) 251
RsaI GTAC 4 cut(s) 230, 583, 734, 747
RsaNI GTAC 4 cut(s) 229, 582, 733, 746
RseI CAYNNNNRTG 3 cut(s) 120, 797, 839
SacI GAGCTC 1 cut(s) 204
SapI GCTCTTC 1 cut(s) 342
SaqAI TTAA 2 cut(s) 285, 552
Sau3AI GATC 7 cut(s) 22, 175, 244, 253, 406, 486, 573
Sau96I GGNCC 2 cut(s) 774, 886
ScaI AGTACT 1 cut(s) 734
SduI GDGCHC 2 cut(s) 204, 395
SfaNI GCATC 5 cut(s) 14, 34, 250, 520, 701
SfcI CTRYAG 1 cut(s) 385
SinI GGWCC 1 cut(s) 774
SmiMI CAYNNNNRTG 3 cut(s) 120, 797, 839
SmlI CTYRAG 2 cut(s) 182, 826
SmoI CTYRAG 2 cut(s) 182, 826
SpeI ACTAGT 1 cut(s) 674
Sse9I AATT 2 cut(s) 564, 655
SsiI CCGC 2 cut(s) 224, 436
SspI AATATT 1 cut(s) 520
SspMI CTAG 3 cut(s) 356, 410, 675
SstI GAGCTC 1 cut(s) 204
StyI CCWWGG 2 cut(s) 396, 634
TaaI ACNGT 4 cut(s) 233, 470, 479, 863
TaiI ACGT 1 cut(s) 702
TaqI TCGA 2 cut(s) 321, 709
TaqII GACCGA 1 cut(s) 791
TasI AATT 2 cut(s) 564, 655
TatI WGTACW 2 cut(s) 581, 732
TfiI GAWTC 1 cut(s) 194
Tru1I TTAA 2 cut(s) 285, 552
Tru9I TTAA 2 cut(s) 285, 552
TscAI CASTG 3 cut(s) 337, 427, 868
TseFI GTSAC 2 cut(s) 457, 805
Tsp45I GTSAC 2 cut(s) 457, 805
TspDTI ATGAA 3 cut(s) 171, 507, 573
TspRI CASTG 3 cut(s) 337, 427, 868
VpaK11BI GGWCC 1 cut(s) 774
XapI RAATTY 1 cut(s) 655
XmnI GAANNNNTTC 2 cut(s) 177, 351
XspI CTAG 3 cut(s) 356, 410, 675
ZrmI AGTACT 1 cut(s) 734
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.