Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000001

Orthogroup ID

OG0001318

Physical Location & Seq

Genomic Coordinates Forward (+)

5653952 .. 5656931

Gene Structure 2980 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug01G0033300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1164 bp

ATGGGTAAATGGGGACATCGCCCCAATCGCAGATTCTTCCGTCAAGAAAAGCTTCCAAGCCCATTCCCTCTTCCTTTTCACCCTCGACCTCCTCCCCCTTCAGAGTTTTGGCGGGATGGTGTACCTCAATGGGAAAAGGAATACTGCACTTTGATCGGGTCCATACCATGGTGGAAGGTGGTAGATGCCAAGAATTATATGTATGGCAGTAGTAATGTACTCAATTGGGACGATTCAGCTGGTGAGGAGGCATTTCAAAATGCGAAAAAGCGCTTTTGGGCAGACATCAACGGCCTCCACTGTGACATCTCTCTACCTGATTCAGATATTTATATTGATGAAATAGATTGGAACCCTTTCATCAATCCTGATATCGTGAAGGAAGTGGATCGTGAGTACTTTGCTCCTGATGATGGAGATGGAGAAGGAAATGACAAGTTGGGGCAGAAAAAGAGGAAGACAGAACATTCAGCTATTATTCCTTTAGATGGACATAACTGTCTTCCAGATACTCCTACAAATCCTTGGGAATGTGACAATATGCAAAGTAGTGGGGATTTGAAAAATGAAGCAGAGGGCTGGAACCAGGGGAATAATCATACAGATTTGGTTAGTGGTGAAGTCAACTCTTGGGAACGCTTCATTACTCAGAGCAATGAAAGAATGGAAAATACTGCATGGGAAGATAGGGATAAATCATGGAGATGGAGCCAGATGGCAAAAAACAGTCTCTCAAAGAATTGGGATGATGGTGGCAATCCTTGGGGACGGGACTGTCAGGGTGTTACCCATGTGAAAGTTAATAATAGATGGGGTGATCCCTTAAATAAGTCTTGGGGATCCAACCAGCCGGAGACAGAGAATTTGGATCATGGTGAAAATCCTTGGGAGTGTGGTCCTAGTCAATATAATGAAGCTTTAACAAAAGATCGAGGATGGAAAGATTGTGGAGGTTGGAAACAGTGTGACAGCCGTATTAACCAGAGAAATAATTTGGATTTTAGGATAAAAGGTAGCAGATGGGGAACTACGAATCACAGTGGCCAGAAGAGGGAACGGTCTCACCAATATATAGCAGGATCCCAAAGCTCAAGATTTCAAGGGAGTGATTGTCAAACAGGTGGATACTGGAGGAGGGCAAACAATAGAAAGAGGCTCAGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Annexin

Protein Analysis

387

Amino Acids

44.88

Weight (kDa)

5.87

Isoelectric Point (pI)

43.05

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001318)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G12380
fragaria_vesca	FvH4_7g02680 FvH4_7g02680
malus_domestica	MD02G1291000.v1.1 MD07G1035500.v1.1 MD07G1036200.v1.1 MD07G1036300.v1.1
prunus_persica	Prupe.2G031900_v2.0.a1 Prupe.2G031900_v2.0.a1
pyrus_communis	pycom02g24600 pycom07g02490 pycom07g02500
rosa_chinensis	RchiOBHm_Chr1g0321371 RchiOBHm_Chr1g0321531 RchiOBHm_Chr1g0321551 RchiOBHm_Chr1g0321701
rosa_laevigata	RLG00000030411 RLG00000030414 RLG00000030418
rosa_multiflora	Rmu_sc0000087.1_g000010 Rmu_sc0000087.1_g000013 Rmu_sc0000196.1_g000001 Rmu_sc0000724.1_g000024 Rmu_sc0000724.1_g000032 Rmu_sc0000960.1_g000004 Rmu_sc0003410.1_g000041 Rmu_sc0003410.1_g000044 Rmu_sc0025973.1_g000001
rosa_roxburghii	Rroxscaffold_160G00434000 Rroxscaffold_4G00327530 Rroxscaffold_4G00327560 Rroxscaffold_4G00327790
rosa_rugosa	Rorug01G0033300 Rorug01G0033500 Rorug01G0033600 Rorug01G0033700
rosa_samantha	Rh1AG044600 Rh1AG045100 Rh1AG045200 Rh1AG045600 Rh1AG046300 Rh1BG042300 Rh1BG043600 Rh1BG044800 Rh1CG047200 Rh1DG052300 Rh1DG052400 Rh1DG052800 Rh1DG054800
rosa_wichuraiana	Rw1G003980 Rw1G004000 Rw1G004080 Rw1G004120 Rw1G004140

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	2 cut(s)	498, 774
AccB7I	CCANNNNNTGG	1 cut(s)	168
AciI	CCGC	1 cut(s)	112
AclWI	GGATC	7 cut(s)	396, 812, 834, 847, 876, 1074, 1087
AcoI	YGGCCR	1 cut(s)	1042
AcsI	RAATTY	1 cut(s)	862
AcuI	CTGAAG	1 cut(s)	84
AfaI	GTAC	3 cut(s)	123, 219, 398
AfeI	AGCGCT	1 cut(s)	272
AfiI	CCNNNNNNNGG	4 cut(s)	168, 413, 488, 1051
AgsI	TTSAA	3 cut(s)	257, 562, 1100
AjnI	CCWGG	1 cut(s)	585
AjuI	GAANNNNNNNTTGG	2 cut(s)	17, 49
AluBI	AGCT	6 cut(s)	52, 239, 473, 917, 1089, 1161
AluI	AGCT	6 cut(s)	52, 239, 473, 917, 1089, 1161
Alw26I	GTCTC	3 cut(s)	734, 848, 1065
AlwI	GGATC	7 cut(s)	396, 812, 834, 847, 876, 1074, 1087
Aor51HI	AGCGCT	1 cut(s)	272
AoxI	GGCC	2 cut(s)	292, 1042
ApoI	RAATTY	1 cut(s)	862
ArsI	GACNNNNNNTTYG	2 cut(s)	847, 879
Asp700I	GAANNNNTTC	2 cut(s)	51, 356
AspLEI	GCGC	1 cut(s)	273
AspS9I	GGNCC	2 cut(s)	159, 896
AsuHPI	GGTGA	6 cut(s)	71, 254, 629, 827, 887, 1055
AvaII	GGWCC	2 cut(s)	159, 896
BalI	TGGCCA	1 cut(s)	1044
BamHI	GGATCC	2 cut(s)	839, 1079
BbsI	GAAGAC	2 cut(s)	464, 494
BceAI	ACGGC	2 cut(s)	307, 957
BcgI	CGANNNNNNTGC	2 cut(s)	136, 170
BciT130I	CCWGG	1 cut(s)	587
BciVI	GTATCC	1 cut(s)	1118
BcoDI	GTCTC	3 cut(s)	734, 848, 1065
BfaI	CTAG	1 cut(s)	900
BfoI	RGCGCY	1 cut(s)	274
BfuI	GTATCC	1 cut(s)	1118
BlpI	GCTNAGC	1 cut(s)	1157
BmcAI	AGTACT	1 cut(s)	398
Bme1390I	CCNGG	1 cut(s)	587
Bme18I	GGWCC	2 cut(s)	159, 896
BmgT120I	GGNCC	2 cut(s)	159, 896
BmiI	GGNNCC	6 cut(s)	160, 353, 584, 710, 841, 1081
BmrFI	CCNGG	1 cut(s)	587
BmsI	GCATC	1 cut(s)	175
BpiI	GAAGAC	2 cut(s)	464, 494
BpmI	CTGGAG	1 cut(s)	1150
Bpu1102I	GCTNAGC	1 cut(s)	1157
BpuEI	CTTGAG	1 cut(s)	1075
BsaI	GGTCTC	1 cut(s)	1065
BsaJI	CCNNGG	5 cut(s)	167, 524, 586, 761, 884
BsaXI	ACNNNNNCTCC	2 cut(s)	1096, 1126
Bsc4I	CCNNNNNNNGG	4 cut(s)	168, 413, 488, 1051
Bse1I	ACTGG	1 cut(s)	1133
Bse3DI	GCAATG	1 cut(s)	661
BseBI	CCWGG	1 cut(s)	587
BseDI	CCNNGG	5 cut(s)	167, 524, 586, 761, 884
BseGI	GGATG	3 cut(s)	121, 751, 941
BseLI	CCNNNNNNNGG	4 cut(s)	168, 413, 488, 1051
BseMI	GCAATG	1 cut(s)	661
BseMII	CTCAG	1 cut(s)	662
BseNI	ACTGG	1 cut(s)	1133
BseRI	GAGGAG	3 cut(s)	81, 260, 1147
BsgI	GTGCAG	1 cut(s)	130
BshFI	GGCC	2 cut(s)	294, 1044
BsiSI	CCGG	1 cut(s)	851
BslFI	GGGAC	4 cut(s)	27, 242, 780, 785
BslI	CCNNNNNNNGG	4 cut(s)	168, 413, 488, 1051
BsmAI	GTCTC	3 cut(s)	734, 848, 1065
BsmFI	GGGAC	4 cut(s)	27, 242, 780, 785
BsnI	GGCC	2 cut(s)	294, 1044
Bso31I	GGTCTC	1 cut(s)	1065
Bsp143I	GATC	7 cut(s)	153, 388, 817, 839, 868, 928, 1079
Bsp1720I	GCTNAGC	1 cut(s)	1157
Bsp19I	CCATGG	1 cut(s)	167
BspACI	CCGC	1 cut(s)	112
BspANI	GGCC	2 cut(s)	294, 1044
BspCNI	CTCAG	1 cut(s)	661
BspLI	GGNNCC	6 cut(s)	160, 353, 584, 710, 841, 1081
BspPI	GGATC	7 cut(s)	396, 812, 834, 847, 876, 1074, 1087
BspTNI	GGTCTC	1 cut(s)	1065
BsrDI	GCAATG	1 cut(s)	661
BsrI	ACTGG	1 cut(s)	1133
BssECI	CCNNGG	5 cut(s)	167, 524, 586, 761, 884
BssMI	GATC	7 cut(s)	153, 388, 817, 839, 868, 928, 1079
BssT1I	CCWWGG	4 cut(s)	167, 524, 761, 884
Bst2UI	CCWGG	1 cut(s)	587
Bst4CI	ACNGT	7 cut(s)	302, 500, 728, 776, 963, 1040, 1059
Bst6I	CTCTTC	2 cut(s)	75, 1043
BstDEI	CTNAG	2 cut(s)	648, 1157
BstDSI	CCRYGG	1 cut(s)	167
BstF5I	GGATG	3 cut(s)	121, 751, 941
BstH2I	RGCGCY	1 cut(s)	274
BstHHI	GCGC	1 cut(s)	273
BstKTI	GATC	7 cut(s)	156, 391, 820, 842, 871, 931, 1082
BstMAI	GTCTC	3 cut(s)	734, 848, 1065
BstMBI	GATC	7 cut(s)	153, 388, 817, 839, 868, 928, 1079
BstMWI	GCNNNNNNNGC	1 cut(s)	27
BstNI	CCWGG	1 cut(s)	587
BstSCI	CCNGG	1 cut(s)	585
BstV2I	GAAGAC	2 cut(s)	464, 494
BstX2I	RGATCY	2 cut(s)	839, 1079
BstYI	RGATCY	2 cut(s)	839, 1079
BsuI	GTATCC	1 cut(s)	1118
BsuRI	GGCC	2 cut(s)	294, 1044
BtgI	CCRYGG	1 cut(s)	167
BtgZI	GCGATG	1 cut(s)	2
BtsCI	GGATG	3 cut(s)	121, 751, 941
BtsIMutI	CAGTG	3 cut(s)	298, 968, 1045
CfoI	GCGC	1 cut(s)	273
Cfr13I	GGNCC	2 cut(s)	159, 896
Csp6I	GTAC	3 cut(s)	122, 218, 397
CviAII	CATG	5 cut(s)	168, 678, 699, 791, 872
CviQI	GTAC	3 cut(s)	122, 218, 397
DdeI	CTNAG	2 cut(s)	648, 1157
DpnI	GATC	7 cut(s)	155, 390, 819, 841, 870, 930, 1081
DpnII	GATC	7 cut(s)	153, 388, 817, 839, 868, 928, 1079
DrdI	GACNNNNNNGTC	2 cut(s)	498, 774
DseDI	GACNNNNNNGTC	2 cut(s)	498, 774
EaeI	YGGCCR	1 cut(s)	1042
Eam1104I	CTCTTC	2 cut(s)	75, 1043
EarI	CTCTTC	2 cut(s)	75, 1043
Eco130I	CCWWGG	4 cut(s)	167, 524, 761, 884
Eco31I	GGTCTC	1 cut(s)	1065
Eco32I	GATATC	1 cut(s)	373
Eco47I	GGWCC	2 cut(s)	159, 896
Eco47III	AGCGCT	1 cut(s)	272
Eco57I	CTGAAG	1 cut(s)	84
EcoRII	CCWGG	1 cut(s)	585
EcoRV	GATATC	1 cut(s)	373
EcoT14I	CCWWGG	4 cut(s)	167, 524, 761, 884
ErhI	CCWWGG	4 cut(s)	167, 524, 761, 884
FaeI	CATG	5 cut(s)	171, 681, 702, 794, 875
FalI	AAGNNNNNCTT	2 cut(s)	36, 68
FaqI	GGGAC	4 cut(s)	27, 242, 780, 785
FatI	CATG	5 cut(s)	167, 677, 698, 790, 871
FauI	CCCGC	1 cut(s)	105
FokI	GGATG	3 cut(s)	128, 758, 948
FspBI	CTAG	1 cut(s)	900
GlaI	GCGC	1 cut(s)	272
GsuI	CTGGAG	1 cut(s)	1150
HaeII	RGCGCY	1 cut(s)	274
HaeIII	GGCC	2 cut(s)	294, 1044
HapII	CCGG	1 cut(s)	851
HhaI	GCGC	1 cut(s)	273
Hin1II	CATG	5 cut(s)	171, 681, 702, 794, 875
Hin6I	GCGC	1 cut(s)	271
HinP1I	GCGC	1 cut(s)	271
HincII	GTYRAC	1 cut(s)	625
HindII	GTYRAC	1 cut(s)	625
HindIII	AAGCTT	2 cut(s)	50, 915
HinfI	GANTC	4 cut(s)	33, 233, 320, 1033
HpaII	CCGG	1 cut(s)	851
HphI	GGTGA	6 cut(s)	71, 254, 629, 827, 887, 1055
Hpy166II	GTNNAC	2 cut(s)	122, 625
Hpy188I	TCNGA	3 cut(s)	103, 325, 651
Hpy188III	TCNNGA	7 cut(s)	44, 368, 376, 392, 407, 506, 1092
Hpy8I	GTNNAC	2 cut(s)	122, 625
HpyAV	CCTTC	4 cut(s)	108, 169, 373, 419
HpyCH4III	ACNGT	7 cut(s)	302, 500, 728, 776, 963, 1040, 1059
HpyCH4V	TGCA	3 cut(s)	147, 544, 677
HpyF10VI	GCNNNNNNNGC	1 cut(s)	27
HpyF3I	CTNAG	2 cut(s)	648, 1157
Hsp92II	CATG	5 cut(s)	171, 681, 702, 794, 875
HspAI	GCGC	1 cut(s)	271
Kzo9I	GATC	7 cut(s)	153, 388, 817, 839, 868, 928, 1079
LmnI	GCTCC	2 cut(s)	409, 708
LweI	GCATC	1 cut(s)	175
MaeI	CTAG	1 cut(s)	900
MaeIII	GTNAC	4 cut(s)	302, 533, 784, 965
MalI	GATC	7 cut(s)	155, 390, 819, 841, 870, 930, 1081
MboI	GATC	7 cut(s)	153, 388, 817, 839, 868, 928, 1079
MboII	GAAGA	6 cut(s)	28, 62, 469, 494, 695, 1060
MfeI	CAATTG	1 cut(s)	223
MflI	RGATCY	2 cut(s)	839, 1079
MlsI	TGGCCA	1 cut(s)	1044
MluCI	AATT	5 cut(s)	193, 223, 739, 862, 991
MluNI	TGGCCA	1 cut(s)	1044
MmeI	TCCRAC	2 cut(s)	867, 935
Mox20I	TGGCCA	1 cut(s)	1044
MroXI	GAANNNNTTC	2 cut(s)	51, 356
MscI	TGGCCA	1 cut(s)	1044
MseI	TTAA	4 cut(s)	801, 824, 920, 978
MslI	CAYNNNNRTG	1 cut(s)	703
Msp20I	TGGCCA	1 cut(s)	1044
MspA1I	CMGCKG	2 cut(s)	239, 1161
MspI	CCGG	1 cut(s)	851
MspR9I	CCNGG	1 cut(s)	587
MunI	CAATTG	1 cut(s)	223
MvaI	CCWGG	1 cut(s)	587
MwoI	GCNNNNNNNGC	1 cut(s)	27
NcoI	CCATGG	1 cut(s)	167
NdeII	GATC	7 cut(s)	153, 388, 817, 839, 868, 928, 1079
NlaIII	CATG	5 cut(s)	171, 681, 702, 794, 875
NlaIV	GGNNCC	6 cut(s)	160, 353, 584, 710, 841, 1081
NmuCI	GTSAC	3 cut(s)	302, 533, 965
PdmI	GAANNNNTTC	2 cut(s)	51, 356
PfeI	GAWTC	4 cut(s)	33, 233, 320, 1033
PflMI	CCANNNNNTGG	1 cut(s)	168
Psp6I	CCWGG	1 cut(s)	585
PspGI	CCWGG	1 cut(s)	585
PspN4I	GGNNCC	6 cut(s)	160, 353, 584, 710, 841, 1081
PspPI	GGNCC	2 cut(s)	159, 896
PsuI	RGATCY	2 cut(s)	839, 1079
PvuII	CAGCTG	2 cut(s)	239, 1161
RsaI	GTAC	3 cut(s)	123, 219, 398
RsaNI	GTAC	3 cut(s)	122, 218, 397
RseI	CAYNNNNRTG	1 cut(s)	703
SaqAI	TTAA	4 cut(s)	801, 824, 920, 978
Sau3AI	GATC	7 cut(s)	153, 388, 817, 839, 868, 928, 1079
Sau96I	GGNCC	2 cut(s)	159, 896
ScaI	AGTACT	1 cut(s)	398
ScrFI	CCNGG	1 cut(s)	587
SfaNI	GCATC	1 cut(s)	175
SinI	GGWCC	2 cut(s)	159, 896
SmiMI	CAYNNNNRTG	1 cut(s)	703
SmlI	CTYRAG	1 cut(s)	1090
SmoI	CTYRAG	1 cut(s)	1090
Sse9I	AATT	5 cut(s)	193, 223, 739, 862, 991
SsiI	CCGC	1 cut(s)	112
SspMI	CTAG	1 cut(s)	900
StyD4I	CCNGG	1 cut(s)	585
StyI	CCWWGG	4 cut(s)	167, 524, 761, 884
TaaI	ACNGT	7 cut(s)	302, 500, 728, 776, 963, 1040, 1059
TaqI	TCGA	2 cut(s)	85, 931
TasI	AATT	5 cut(s)	193, 223, 739, 862, 991
TatI	WGTACW	2 cut(s)	217, 396
TfiI	GAWTC	4 cut(s)	33, 233, 320, 1033
Tru1I	TTAA	4 cut(s)	801, 824, 920, 978
Tru9I	TTAA	4 cut(s)	801, 824, 920, 978
TscAI	CASTG	3 cut(s)	305, 968, 1045
TseFI	GTSAC	3 cut(s)	302, 533, 965
Tsp45I	GTSAC	3 cut(s)	302, 533, 965
TspDTI	ATGAA	6 cut(s)	349, 354, 582, 631, 672, 927
TspGWI	ACGGA	1 cut(s)	29
TspRI	CASTG	3 cut(s)	305, 968, 1045
Van91I	CCANNNNNTGG	1 cut(s)	168
VpaK11BI	GGWCC	2 cut(s)	159, 896
XapI	RAATTY	1 cut(s)	862
XmnI	GAANNNNTTC	2 cut(s)	51, 356
XspI	CTAG	1 cut(s)	900
ZrmI	AGTACT	1 cut(s)	398

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.