Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1B

Orthogroup ID

OG0001318

Physical Location & Seq

Genomic Coordinates Reverse (-)

5596034 .. 5599417

Gene Structure 3384 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1BG042300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 984 bp

ATGCGTCACAGCTCACCGACTTTCTTTCATAATTCATATATCTGCATGAATTTATGTTTTGTTCGGTACTCTTACATAGGATGCGGGACTGATGAGAAGGCCATCATCTGCTTACTGGGTCATAGAAATGCAACTCAAAGAAAAGAAATCAGGGTCGTTTATGAGCAACTTTATCAAGAAGATATTATCAAGCGCCTTGAGTCTGAGCTCTCTGGTGATTTTGAGAGAGCGGTGTACCGTTGGACATTGGATCCAGCTGATTGTGATGCTGTTTTGGCTAATCTGGCCATCAAGAAACCCGAGTGCAACTACAATGTCATCATCGAAATCTTCAGTGTTCGGTGTCCTGAAGAGCTTCTGGCTGTAACAAAAGCTTACCAGCTTCGTTACAAGTGCTCTTTGGAAGAAGATCTAGCTCAACATACCAATGGTGATATCCGCAAGCTTTTGGTTGCTTTGGTGACTGCTTACCGCTGTGATGGTAACGAGATTAATGTAAAGTTGGCAAATTCAGAAGCTAATATTCTTCAGGATGCTATCAAAGACGAGTGTTTTAATCATGAAGAAATTATTAGAATCCTGAGTACACGAAGCAAGACACAGTTCATGGCAACATTCAACAAATACAGAGATGACCATGGCAACTCTATCAGCAAGAATTTCTTGGAGGATGGGGCTAATGATTTCCAGAAGGCATTGCATACTGCCGTTCGATGCCTCAATGACCACAAGAAGTGCTTTGAGAAGGTACTTCGCAAGGCGATCATAGGGACAGGGACCAATGAGGATGCCCTCACTCGTGTGATTGTTACAAGGGCAGAGAAGGACTTGAACGACATCATGGAGGTTTACTACAAGAAGAACAGTGTTCCTCTTGAACAGGCTGTGGCCCAAGACACTTCAGGGGACTACAAGACCTTCCTCCTTACTCTGTTGGGAAAGAAGGACCGAGATCCTTCTCTGATCAAATTCGAATCAAGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Annexin

Protein Analysis

327

Amino Acids

37.51

Weight (kDa)

6.28

Isoelectric Point (pI)

36.52

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Annexin	PF00191	27 - 78	1.4e-14	Annexin
Annexin	PF00191	89 - 153	3.3e-13	Annexin
Annexin	PF00191	172 - 234	1.3e-09	Annexin
Annexin	PF00191	249 - 311	2.5e-16	Annexin

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001318)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G12380
fragaria_vesca	FvH4_7g02680 FvH4_7g02680
malus_domestica	MD02G1291000.v1.1 MD07G1035500.v1.1 MD07G1036200.v1.1 MD07G1036300.v1.1
prunus_persica	Prupe.2G031900_v2.0.a1 Prupe.2G031900_v2.0.a1
pyrus_communis	pycom02g24600 pycom07g02490 pycom07g02500
rosa_chinensis	RchiOBHm_Chr1g0321371 RchiOBHm_Chr1g0321531 RchiOBHm_Chr1g0321551 RchiOBHm_Chr1g0321701
rosa_laevigata	RLG00000030411 RLG00000030414 RLG00000030418
rosa_multiflora	Rmu_sc0000087.1_g000010 Rmu_sc0000087.1_g000013 Rmu_sc0000196.1_g000001 Rmu_sc0000724.1_g000024 Rmu_sc0000724.1_g000032 Rmu_sc0000960.1_g000004 Rmu_sc0003410.1_g000041 Rmu_sc0003410.1_g000044 Rmu_sc0025973.1_g000001
rosa_roxburghii	Rroxscaffold_160G00434000 Rroxscaffold_4G00327530 Rroxscaffold_4G00327560 Rroxscaffold_4G00327790
rosa_rugosa	Rorug01G0033300 Rorug01G0033500 Rorug01G0033600 Rorug01G0033700
rosa_samantha	Rh1AG044600 Rh1AG045100 Rh1AG045200 Rh1AG045600 Rh1AG046300 Rh1BG042300 Rh1BG043600 Rh1BG044800 Rh1CG047200 Rh1DG052300 Rh1DG052400 Rh1DG052800 Rh1DG054800
rosa_wichuraiana	Rw1G003980 Rw1G004000 Rw1G004080 Rw1G004120 Rw1G004140

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	230
AciI	CCGC	4 cut(s)	84, 230, 439, 472
AclWI	GGATC	3 cut(s)	245, 258, 947
AcoI	YGGCCR	1 cut(s)	285
AcsI	RAATTY	4 cut(s)	49, 508, 658, 968
AcuI	CTGAAG	4 cut(s)	316, 369, 512, 885
AfaI	GTAC	4 cut(s)	68, 236, 586, 750
AgsI	TTSAA	3 cut(s)	619, 832, 878
AleI	CACNNNNGTG	1 cut(s)	800
Alw21I	GWGCWC	2 cut(s)	210, 398
AlwI	GGATC	3 cut(s)	245, 258, 947
Ama87I	CYCGRG	1 cut(s)	299
AoxI	GGCC	3 cut(s)	99, 285, 888
ApoI	RAATTY	4 cut(s)	49, 508, 658, 968
AseI	ATTAAT	1 cut(s)	492
Asp700I	GAANNNNTTC	1 cut(s)	354
AspLEI	GCGC	1 cut(s)	195
AspS9I	GGNCC	3 cut(s)	777, 889, 946
AsuHPI	GGTGA	4 cut(s)	6, 227, 443, 472
AsuII	TTCGAA	1 cut(s)	972
AvaI	CYCGRG	1 cut(s)	299
AvaII	GGWCC	2 cut(s)	777, 946
BalI	TGGCCA	1 cut(s)	287
BamHI	GGATCC	1 cut(s)	250
BanII	GRGCYC	1 cut(s)	210
BauI	CACGAG	1 cut(s)	798
Bbv12I	GWGCWC	2 cut(s)	210, 398
BccI	CCATC	4 cut(s)	110, 296, 473, 665
BceAI	ACGGC	1 cut(s)	692
BclI	TGATCA	1 cut(s)	963
BfaI	CTAG	2 cut(s)	413, 982
BfoI	RGCGCY	1 cut(s)	196
BglII	AGATCT	1 cut(s)	409
Bme18I	GGWCC	2 cut(s)	777, 946
BmeT110I	CYCGRG	1 cut(s)	299
BmgT120I	GGNCC	3 cut(s)	777, 889, 946
BmiI	GGNNCC	2 cut(s)	252, 778
BmrI	ACTGGG	1 cut(s)	125
BmsI	GCATC	5 cut(s)	71, 256, 523, 704, 778
BmuI	ACTGGG	1 cut(s)	125
Bpu14I	TTCGAA	1 cut(s)	972
BpuEI	CTTGAG	1 cut(s)	218
BsaJI	CCNNGG	1 cut(s)	637
Bse1I	ACTGG	1 cut(s)	120
Bse3DI	GCAATG	1 cut(s)	695
BseDI	CCNNGG	1 cut(s)	637
BseGI	GGATG	4 cut(s)	86, 538, 676, 793
BseMI	GCAATG	1 cut(s)	695
BseMII	CTCAG	2 cut(s)	195, 572
BseNI	ACTGG	1 cut(s)	120
BshFI	GGCC	3 cut(s)	101, 287, 890
BsiHKAI	GWGCWC	2 cut(s)	210, 398
BsiHKCI	CYCGRG	1 cut(s)	299
BslFI	GGGAC	4 cut(s)	100, 784, 790, 920
BsmFI	GGGAC	4 cut(s)	100, 784, 790, 920
BsnI	GGCC	3 cut(s)	101, 287, 890
BsoBI	CYCGRG	1 cut(s)	299
Bsp119I	TTCGAA	1 cut(s)	972
Bsp1286I	GDGCHC	2 cut(s)	210, 398
Bsp143I	GATC	5 cut(s)	250, 409, 762, 952, 963
Bsp19I	CCATGG	1 cut(s)	637
BspACI	CCGC	4 cut(s)	84, 230, 439, 472
BspANI	GGCC	3 cut(s)	101, 287, 890
BspCNI	CTCAG	2 cut(s)	196, 573
BspHI	TCATGA	1 cut(s)	559
BspLI	GGNNCC	2 cut(s)	252, 778
BspPI	GGATC	3 cut(s)	245, 258, 947
BspQI	GCTCTTC	1 cut(s)	345
BspT104I	TTCGAA	1 cut(s)	972
BsrBI	CCGCTC	1 cut(s)	230
BsrDI	GCAATG	1 cut(s)	695
BsrI	ACTGG	1 cut(s)	120
BssECI	CCNNGG	1 cut(s)	637
BssMI	GATC	5 cut(s)	250, 409, 762, 952, 963
BssSI	CACGAG	1 cut(s)	798
BssT1I	CCWWGG	1 cut(s)	637
Bst2BI	CACGAG	1 cut(s)	798
Bst4CI	ACNGT	3 cut(s)	239, 603, 866
Bst6I	CTCTTC	1 cut(s)	345
BstBI	TTCGAA	1 cut(s)	972
BstC8I	GCNNGC	1 cut(s)	443
BstDEI	CTNAG	2 cut(s)	204, 581
BstDSI	CCRYGG	1 cut(s)	637
BstF5I	GGATG	4 cut(s)	86, 538, 676, 793
BstH2I	RGCGCY	1 cut(s)	196
BstHHI	GCGC	1 cut(s)	195
BstKTI	GATC	5 cut(s)	253, 412, 765, 955, 966
BstMBI	GATC	5 cut(s)	250, 409, 762, 952, 963
BstMWI	GCNNNNNNNGC	2 cut(s)	275, 284
BstX2I	RGATCY	3 cut(s)	250, 409, 952
BstYI	RGATCY	3 cut(s)	250, 409, 952
BsuRI	GGCC	3 cut(s)	101, 287, 890
BtgI	CCRYGG	1 cut(s)	637
BtsCI	GGATG	4 cut(s)	86, 538, 676, 793
BtsIMutI	CAGTG	2 cut(s)	340, 871
Cac8I	GCNNGC	1 cut(s)	443
CciI	TCATGA	1 cut(s)	559
CfoI	GCGC	1 cut(s)	195
Cfr13I	GGNCC	3 cut(s)	777, 889, 946
Csp6I	GTAC	4 cut(s)	67, 235, 585, 749
CviAII	CATG	5 cut(s)	46, 560, 607, 638, 841
CviQI	GTAC	4 cut(s)	67, 235, 585, 749
DdeI	CTNAG	2 cut(s)	204, 581
DpnI	GATC	5 cut(s)	252, 411, 764, 954, 965
DpnII	GATC	5 cut(s)	250, 409, 762, 952, 963
EaeI	YGGCCR	1 cut(s)	285
Eam1104I	CTCTTC	1 cut(s)	345
EarI	CTCTTC	1 cut(s)	345
Ecl136II	GAGCTC	1 cut(s)	208
Eco130I	CCWWGG	1 cut(s)	637
Eco24I	GRGCYC	1 cut(s)	210
Eco32I	GATATC	1 cut(s)	436
Eco47I	GGWCC	2 cut(s)	777, 946
Eco53kI	GAGCTC	1 cut(s)	208
Eco57I	CTGAAG	4 cut(s)	316, 369, 512, 885
Eco88I	CYCGRG	1 cut(s)	299
EcoICRI	GAGCTC	1 cut(s)	208
EcoRV	GATATC	1 cut(s)	436
EcoT14I	CCWWGG	1 cut(s)	637
EcoT38I	GRGCYC	1 cut(s)	210
ErhI	CCWWGG	1 cut(s)	637
FaeI	CATG	5 cut(s)	49, 563, 610, 641, 844
FalI	AAGNNNNNCTT	4 cut(s)	647, 679, 722, 754
FaqI	GGGAC	4 cut(s)	100, 784, 790, 920
FatI	CATG	5 cut(s)	45, 559, 606, 637, 840
FauI	CCCGC	1 cut(s)	77
FbaI	TGATCA	1 cut(s)	963
FokI	GGATG	4 cut(s)	93, 545, 683, 800
FriOI	GRGCYC	1 cut(s)	210
FspBI	CTAG	2 cut(s)	413, 982
GlaI	GCGC	1 cut(s)	194
HaeII	RGCGCY	1 cut(s)	196
HaeIII	GGCC	3 cut(s)	101, 287, 890
HhaI	GCGC	1 cut(s)	195
Hin1II	CATG	5 cut(s)	49, 563, 610, 641, 844
Hin6I	GCGC	1 cut(s)	193
HinP1I	GCGC	1 cut(s)	193
HindIII	AAGCTT	2 cut(s)	372, 443
HinfI	GANTC	3 cut(s)	200, 576, 974
HphI	GGTGA	4 cut(s)	6, 227, 443, 472
Hpy166II	GTNNAC	3 cut(s)	235, 587, 850
Hpy188I	TCNGA	3 cut(s)	205, 514, 963
Hpy188III	TCNNGA	8 cut(s)	176, 292, 347, 530, 560, 580, 688, 875
Hpy8I	GTNNAC	3 cut(s)	235, 587, 850
HpyAV	CCTTC	7 cut(s)	91, 685, 739, 817, 928, 937, 966
HpyCH4III	ACNGT	3 cut(s)	239, 603, 866
HpyCH4V	TGCA	4 cut(s)	45, 131, 306, 700
HpyF10VI	GCNNNNNNNGC	2 cut(s)	275, 284
HpyF3I	CTNAG	2 cut(s)	204, 581
Hsp92II	CATG	5 cut(s)	49, 563, 610, 641, 844
HspAI	GCGC	1 cut(s)	193
Ksp22I	TGATCA	1 cut(s)	963
Kzo9I	GATC	5 cut(s)	250, 409, 762, 952, 963
LguI	GCTCTTC	1 cut(s)	345
LweI	GCATC	5 cut(s)	71, 256, 523, 704, 778
MaeI	CTAG	2 cut(s)	413, 982
MaeIII	GTNAC	6 cut(s)	5, 364, 386, 460, 482, 808
MalI	GATC	5 cut(s)	252, 411, 764, 954, 965
MbiI	CCGCTC	1 cut(s)	230
MboI	GATC	5 cut(s)	250, 409, 762, 952, 963
MboII	GAAGA	8 cut(s)	191, 322, 362, 416, 419, 518, 575, 871
MflI	RGATCY	3 cut(s)	250, 409, 952
MhlI	GDGCHC	2 cut(s)	210, 398
MlsI	TGGCCA	1 cut(s)	287
MluCI	AATT	6 cut(s)	31, 49, 508, 567, 658, 968
MluNI	TGGCCA	1 cut(s)	287
MlyI	GAGTC	1 cut(s)	209
MmeI	TCCRAC	1 cut(s)	221
MnlI	CCTC	7 cut(s)	661, 728, 778, 803, 838, 882, 932
Mox20I	TGGCCA	1 cut(s)	287
MroXI	GAANNNNTTC	1 cut(s)	354
MscI	TGGCCA	1 cut(s)	287
MseI	TTAA	2 cut(s)	492, 555
MslI	CAYNNNNRTG	3 cut(s)	126, 426, 800
Msp20I	TGGCCA	1 cut(s)	287
MspA1I	CMGCKG	2 cut(s)	257, 474
MwoI	GCNNNNNNNGC	2 cut(s)	275, 284
NcoI	CCATGG	1 cut(s)	637
NdeII	GATC	5 cut(s)	250, 409, 762, 952, 963
NlaIII	CATG	5 cut(s)	49, 563, 610, 641, 844
NlaIV	GGNNCC	2 cut(s)	252, 778
NmuCI	GTSAC	2 cut(s)	5, 460
NspV	TTCGAA	1 cut(s)	972
OliI	CACNNNNGTG	1 cut(s)	800
PagI	TCATGA	1 cut(s)	559
PciSI	GCTCTTC	1 cut(s)	345
PdmI	GAANNNNTTC	1 cut(s)	354
PfeI	GAWTC	2 cut(s)	576, 974
PleI	GAGTC	1 cut(s)	208
PpsI	GAGTC	1 cut(s)	208
PshBI	ATTAAT	1 cut(s)	492
Psp124BI	GAGCTC	1 cut(s)	210
PspN4I	GGNNCC	2 cut(s)	252, 778
PspPI	GGNCC	3 cut(s)	777, 889, 946
PsuI	RGATCY	3 cut(s)	250, 409, 952
PvuII	CAGCTG	1 cut(s)	257
RsaI	GTAC	4 cut(s)	68, 236, 586, 750
RsaNI	GTAC	4 cut(s)	67, 235, 585, 749
RseI	CAYNNNNRTG	3 cut(s)	126, 426, 800
SacI	GAGCTC	1 cut(s)	210
SapI	GCTCTTC	1 cut(s)	345
SaqAI	TTAA	2 cut(s)	492, 555
Sau3AI	GATC	5 cut(s)	250, 409, 762, 952, 963
Sau96I	GGNCC	3 cut(s)	777, 889, 946
SchI	GAGTC	1 cut(s)	209
SduI	GDGCHC	2 cut(s)	210, 398
SfaNI	GCATC	5 cut(s)	71, 256, 523, 704, 778
SfuI	TTCGAA	1 cut(s)	972
SinI	GGWCC	2 cut(s)	777, 946
SmiMI	CAYNNNNRTG	3 cut(s)	126, 426, 800
SmlI	CTYRAG	1 cut(s)	197
SmoI	CTYRAG	1 cut(s)	197
Sse9I	AATT	6 cut(s)	31, 49, 508, 567, 658, 968
SsiI	CCGC	4 cut(s)	84, 230, 439, 472
SspI	AATATT	1 cut(s)	523
SspMI	CTAG	2 cut(s)	413, 982
SstI	GAGCTC	1 cut(s)	210
StyI	CCWWGG	1 cut(s)	637
TaaI	ACNGT	3 cut(s)	239, 603, 866
TaqI	TCGA	3 cut(s)	324, 712, 972
TaqII	GACCGA	1 cut(s)	963
TasI	AATT	6 cut(s)	31, 49, 508, 567, 658, 968
TatI	WGTACW	1 cut(s)	584
TfiI	GAWTC	2 cut(s)	576, 974
Tru1I	TTAA	2 cut(s)	492, 555
Tru9I	TTAA	2 cut(s)	492, 555
TscAI	CASTG	2 cut(s)	340, 871
TseFI	GTSAC	2 cut(s)	5, 460
Tsp45I	GTSAC	2 cut(s)	5, 460
TspDTI	ATGAA	5 cut(s)	17, 24, 62, 576, 595
TspRI	CASTG	2 cut(s)	340, 871
VpaK11BI	GGWCC	2 cut(s)	777, 946
VspI	ATTAAT	1 cut(s)	492
XapI	RAATTY	4 cut(s)	49, 508, 658, 968
XmnI	GAANNNNTTC	1 cut(s)	354
XspI	CTAG	2 cut(s)	413, 982

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.