Rroxscaffold_4G00327790

Annexin-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000004
OG0001318
Physical Location & Seq
Forward (+)
60638169 .. 60645288
7120 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_4G00327790.1

Sequence Viewer

Length: 537 bp
ATGTTGCATCTTTTTGTTGCTTTGGTGACTGCTTACTGCTGTGACGGTAACGAGATTAATGTAAAGTTGGCAAATTCAGAAGCTAATATTCTTCAGGATGCTATCAAAGACGAGTGTTTTAATCATGAAGAAATTATTAGAATCCTGAGTACACGAAGCAAGACACAGGTCATGGCAACATTCAACAAATACAGAGATGACCATGGCAACTCTATCAGCAAGAATTTCTTGGAGGATGGGGCTAATGATTTCCAGAAGGCATTGCATACTGCCGTTCCATTCCTCAATGACCACAAGAAGTACTTTGAGAAGGTACTTCAGAAGGCAATCATAGGGACAGGGACCAATGAGGATGCCCTCACTCGTGTGATTGTTACAAGGGCAGAGAAGGACTTGAAGGATCATGGAGGCTTGCAAGAAGACAGACGTGCGCCGGAAAGGAAAAAGGATGCAGTTGGTTTGCGTTGGTGCTGCAGGGGCAGCAGACTTGCAGCGGTGCTGCAGGGGCAGCAGGGATGCATGCGCAGGGGCGCGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Annexin

Protein Analysis

178

Amino Acids

20.03

Weight (kDa)

8.52

Isoelectric Point (pI)

47.49

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Annexin PF00191 27 - 89 3e-10 Annexin
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 524
AccII CGCG 1 cut(s) 533
AciI CCGC 1 cut(s) 494
AclWI GGATC 1 cut(s) 408
AcsI RAATTY 2 cut(s) 73, 223
AcuI CTGAAG 2 cut(s) 77, 302
AfaI GTAC 3 cut(s) 151, 302, 315
AgsI TTSAA 2 cut(s) 184, 397
AjiI CACGTC 1 cut(s) 428
AleI CACNNNNGTG 1 cut(s) 365
AluBI AGCT 1 cut(s) 83
AluI AGCT 1 cut(s) 83
AlwI GGATC 1 cut(s) 408
ApeKI GCWGC 5 cut(s) 471, 480, 491, 499, 508
ApoI RAATTY 2 cut(s) 73, 223
AseI ATTAAT 1 cut(s) 57
AspLEI GCGC 3 cut(s) 433, 525, 533
AspS9I GGNCC 1 cut(s) 342
AsuHPI GGTGA 1 cut(s) 37
AvaII GGWCC 1 cut(s) 342
BauI CACGAG 1 cut(s) 363
BbsI GAAGAC 1 cut(s) 426
BbvI GCAGC 5 cut(s) 458, 486, 492, 503, 520
BccI CCATC 1 cut(s) 230
BceAI ACGGC 1 cut(s) 257
BfmI CTRYAG 2 cut(s) 472, 500
BisI GCNGC 5 cut(s) 472, 481, 492, 500, 509
BlsI GCNGC 5 cut(s) 473, 482, 493, 501, 510
BmcAI AGTACT 1 cut(s) 302
Bme18I GGWCC 1 cut(s) 342
BmgBI CACGTC 1 cut(s) 428
BmgT120I GGNCC 1 cut(s) 342
BmiI GGNNCC 1 cut(s) 343
BmsI GCATC 5 cut(s) 16, 88, 343, 439, 506
BoxI GACNNNNGTC 1 cut(s) 167
BpiI GAAGAC 1 cut(s) 426
BsaJI CCNNGG 1 cut(s) 202
Bse3DI GCAATG 1 cut(s) 260
BseDI CCNNGG 1 cut(s) 202
BseGI GGATG 5 cut(s) 103, 241, 358, 454, 521
BseMI GCAATG 1 cut(s) 260
BseMII CTCAG 1 cut(s) 137
BseXI GCAGC 5 cut(s) 458, 486, 492, 503, 520
Bsh1236I CGCG 1 cut(s) 533
BsiSI CCGG 1 cut(s) 434
BslFI GGGAC 2 cut(s) 349, 355
BsmFI GGGAC 2 cut(s) 349, 355
Bsp143I GATC 1 cut(s) 400
Bsp19I CCATGG 1 cut(s) 202
BspACI CCGC 1 cut(s) 494
BspCNI CTCAG 1 cut(s) 138
BspFNI CGCG 1 cut(s) 533
BspHI TCATGA 1 cut(s) 124
BspLI GGNNCC 1 cut(s) 343
BspMAI CTGCAG 2 cut(s) 476, 504
BspPI GGATC 1 cut(s) 408
BsrDI GCAATG 1 cut(s) 260
BssECI CCNNGG 1 cut(s) 202
BssMI GATC 1 cut(s) 400
BssSI CACGAG 1 cut(s) 363
BssT1I CCWWGG 1 cut(s) 202
Bst2BI CACGAG 1 cut(s) 363
Bst4CI ACNGT 1 cut(s) 47
BstC8I GCNNGC 2 cut(s) 413, 521
BstDEI CTNAG 1 cut(s) 146
BstDSI CCRYGG 1 cut(s) 202
BstF5I GGATG 5 cut(s) 103, 241, 358, 454, 521
BstFNI CGCG 1 cut(s) 533
BstHHI GCGC 3 cut(s) 433, 525, 533
BstKTI GATC 1 cut(s) 403
BstMBI GATC 1 cut(s) 400
BstMWI GCNNNNNNNGC 4 cut(s) 477, 480, 505, 508
BstNSI RCATGY 1 cut(s) 523
BstPAI GACNNNNGTC 1 cut(s) 167
BstSFI CTRYAG 2 cut(s) 472, 500
BstUI CGCG 1 cut(s) 533
BstV1I GCAGC 5 cut(s) 458, 486, 492, 503, 520
BstV2I GAAGAC 1 cut(s) 426
BtgI CCRYGG 1 cut(s) 202
BtrI CACGTC 1 cut(s) 428
BtsCI GGATG 5 cut(s) 103, 241, 358, 454, 521
Cac8I GCNNGC 2 cut(s) 413, 521
CciI TCATGA 1 cut(s) 124
CfoI GCGC 3 cut(s) 433, 525, 533
Cfr13I GGNCC 1 cut(s) 342
Csp6I GTAC 3 cut(s) 150, 301, 314
CviAII CATG 5 cut(s) 125, 172, 203, 404, 520
CviJI RGCY 3 cut(s) 83, 242, 411
CviKI_1 RGCY 3 cut(s) 83, 242, 411
CviQI GTAC 3 cut(s) 150, 301, 314
DdeI CTNAG 1 cut(s) 146
DpnI GATC 1 cut(s) 402
DpnII GATC 1 cut(s) 400
Eco130I CCWWGG 1 cut(s) 202
Eco47I GGWCC 1 cut(s) 342
Eco57I CTGAAG 2 cut(s) 77, 302
EcoT14I CCWWGG 1 cut(s) 202
EcoT22I ATGCAT 1 cut(s) 521
ErhI CCWWGG 1 cut(s) 202
FaeI CATG 5 cut(s) 128, 175, 206, 407, 523
FaiI YATR 7 cut(s) 126, 173, 204, 267, 332, 405, 521
FalI AAGNNNNNCTT 4 cut(s) 212, 244, 287, 319
FaqI GGGAC 2 cut(s) 349, 355
FatI CATG 5 cut(s) 124, 171, 202, 403, 519
Fnu4HI GCNGC 5 cut(s) 472, 481, 492, 500, 509
FokI GGATG 5 cut(s) 110, 248, 365, 461, 528
Fsp4HI GCNGC 5 cut(s) 472, 481, 492, 500, 509
FspI TGCGCA 1 cut(s) 524
GlaI GCGC 3 cut(s) 432, 524, 532
GluI GCNGC 5 cut(s) 472, 481, 492, 500, 509
HapII CCGG 1 cut(s) 434
HhaI GCGC 3 cut(s) 433, 525, 533
Hin1II CATG 5 cut(s) 128, 175, 206, 407, 523
Hin6I GCGC 3 cut(s) 431, 523, 531
HinP1I GCGC 3 cut(s) 431, 523, 531
HinfI GANTC 1 cut(s) 141
HpaII CCGG 1 cut(s) 434
HphI GGTGA 1 cut(s) 37
Hpy166II GTNNAC 1 cut(s) 152
Hpy188I TCNGA 2 cut(s) 79, 321
Hpy188III TCNNGA 4 cut(s) 95, 125, 145, 253
Hpy8I GTNNAC 1 cut(s) 152
HpyAV CCTTC 5 cut(s) 250, 304, 316, 382, 391
HpyCH4III ACNGT 1 cut(s) 47
HpyCH4IV ACGT 1 cut(s) 427
HpyCH4V TGCA 8 cut(s) 7, 265, 415, 452, 474, 491, 502, 519
HpyF10VI GCNNNNNNNGC 4 cut(s) 477, 480, 505, 508
HpyF3I CTNAG 1 cut(s) 146
HpySE526I ACGT 1 cut(s) 427
Hsp92II CATG 5 cut(s) 128, 175, 206, 407, 523
HspAI GCGC 3 cut(s) 431, 523, 531
Kzo9I GATC 1 cut(s) 400
Lsp1109I GCAGC 5 cut(s) 458, 486, 492, 503, 520
LweI GCATC 5 cut(s) 16, 88, 343, 439, 506
MaeII ACGT 1 cut(s) 427
MaeIII GTNAC 4 cut(s) 25, 41, 47, 373
MalI GATC 1 cut(s) 402
MboI GATC 1 cut(s) 400
MboII GAAGA 3 cut(s) 83, 140, 431
MluCI AATT 3 cut(s) 73, 132, 223
MnlI CCTC 5 cut(s) 226, 293, 343, 368, 401
Mph1103I ATGCAT 1 cut(s) 521
MseI TTAA 2 cut(s) 57, 120
MslI CAYNNNNRTG 1 cut(s) 365
MspA1I CMGCKG 1 cut(s) 494
MspI CCGG 1 cut(s) 434
MvnI CGCG 1 cut(s) 533
MwoI GCNNNNNNNGC 4 cut(s) 477, 480, 505, 508
NcoI CCATGG 1 cut(s) 202
NdeII GATC 1 cut(s) 400
NlaIII CATG 5 cut(s) 128, 175, 206, 407, 523
NlaIV GGNNCC 1 cut(s) 343
NmuCI GTSAC 2 cut(s) 25, 41
NsbI TGCGCA 1 cut(s) 524
NsiI ATGCAT 1 cut(s) 521
NspI RCATGY 1 cut(s) 523
OliI CACNNNNGTG 1 cut(s) 365
PaeI GCATGC 1 cut(s) 523
PagI TCATGA 1 cut(s) 124
PfeI GAWTC 1 cut(s) 141
PkrI GCNGC 5 cut(s) 473, 482, 493, 501, 510
PshAI GACNNNNGTC 1 cut(s) 167
PshBI ATTAAT 1 cut(s) 57
PspN4I GGNNCC 1 cut(s) 343
PspPI GGNCC 1 cut(s) 342
PstI CTGCAG 2 cut(s) 476, 504
RsaI GTAC 3 cut(s) 151, 302, 315
RsaNI GTAC 3 cut(s) 150, 301, 314
RseI CAYNNNNRTG 1 cut(s) 365
SaqAI TTAA 2 cut(s) 57, 120
SatI GCNGC 5 cut(s) 472, 481, 492, 500, 509
Sau3AI GATC 1 cut(s) 400
Sau96I GGNCC 1 cut(s) 342
ScaI AGTACT 1 cut(s) 302
SetI ASST 4 cut(s) 85, 171, 315, 430
SfaNI GCATC 5 cut(s) 16, 88, 343, 439, 506
SfcI CTRYAG 2 cut(s) 472, 500
SinI GGWCC 1 cut(s) 342
SmiMI CAYNNNNRTG 1 cut(s) 365
SphI GCATGC 1 cut(s) 523
Sse9I AATT 3 cut(s) 73, 132, 223
SsiI CCGC 1 cut(s) 494
SspI AATATT 1 cut(s) 88
StyI CCWWGG 1 cut(s) 202
TaaI ACNGT 1 cut(s) 47
TaiI ACGT 1 cut(s) 430
TasI AATT 3 cut(s) 73, 132, 223
TatI WGTACW 2 cut(s) 149, 300
TfiI GAWTC 1 cut(s) 141
Tru1I TTAA 2 cut(s) 57, 120
Tru9I TTAA 2 cut(s) 57, 120
TseFI GTSAC 2 cut(s) 25, 41
TseI GCWGC 5 cut(s) 471, 480, 491, 499, 508
Tsp45I GTSAC 2 cut(s) 25, 41
TspDTI ATGAA 1 cut(s) 141
VpaK11BI GGWCC 1 cut(s) 342
VspI ATTAAT 1 cut(s) 57
XapI RAATTY 2 cut(s) 73, 223
XceI RCATGY 1 cut(s) 523
ZrmI AGTACT 1 cut(s) 302
Zsp2I ATGCAT 1 cut(s) 521
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.