Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1A

Orthogroup ID

OG0001318

Physical Location & Seq

Genomic Coordinates Reverse (-)

7922652 .. 7923386

Gene Structure 735 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1AG046300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 525 bp

ATGGTGGATGTTGCAGCTTTTGGTTGCTTTGGTGACTGCTTATACCGTTATGACGGTAACGAGATCAATGCAAAGTTGGCAAATTCAGAAGCTGATATTCTCCATGATGCTATCAAAGACAAGGCTTTCAATCATGAAGAAATTATCAGGATCCTGAGTACAAGGAGCAAGACACAGCTCATGGCTACATTCAACAAATACAGAGATGATCAGGGCATTTCTATCAGCAAGGCTTTGTTGGATGAGGAAGCTAATGATTTCCAGAAGGCATTGCACACAGCCATTCGATGCCTCAATGACCCCAAGAAGTACTTTGAGAAGGTACTTCGCAATGCAATCAAAAGGCTTGGGACCTATGAGGATGCTCTCACTCGTGTAATTGTTACAAGGGCAGAGAGGGACTTGAGGGACATCAAGGAGGTTTACTACAAGAAGAACAGTGTTCCTCTTGAACAGGCTGTGGCCAAAGACACTTCAGGGGACTATAAGGCCTTCCTCCTTACTCTGTTGGGAAAGGAAGATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Annexin

Protein Analysis

174

Amino Acids

19.86

Weight (kDa)

6.33

Isoelectric Point (pI)

25.42

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Annexin	PF00191	30 - 92	3.1e-12	Annexin
Annexin	PF00191	104 - 169	1.9e-17	Annexin

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

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Orthologous Genes (Group: OG0001318)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G12380
fragaria_vesca	FvH4_7g02680 FvH4_7g02680
malus_domestica	MD02G1291000.v1.1 MD07G1035500.v1.1 MD07G1036200.v1.1 MD07G1036300.v1.1
prunus_persica	Prupe.2G031900_v2.0.a1 Prupe.2G031900_v2.0.a1
pyrus_communis	pycom02g24600 pycom07g02490 pycom07g02500
rosa_chinensis	RchiOBHm_Chr1g0321371 RchiOBHm_Chr1g0321531 RchiOBHm_Chr1g0321551 RchiOBHm_Chr1g0321701
rosa_laevigata	RLG00000030411 RLG00000030414 RLG00000030418
rosa_multiflora	Rmu_sc0000087.1_g000010 Rmu_sc0000087.1_g000013 Rmu_sc0000196.1_g000001 Rmu_sc0000724.1_g000024 Rmu_sc0000724.1_g000032 Rmu_sc0000960.1_g000004 Rmu_sc0003410.1_g000041 Rmu_sc0003410.1_g000044 Rmu_sc0025973.1_g000001
rosa_roxburghii	Rroxscaffold_160G00434000 Rroxscaffold_4G00327530 Rroxscaffold_4G00327560 Rroxscaffold_4G00327790
rosa_rugosa	Rorug01G0033300 Rorug01G0033500 Rorug01G0033600 Rorug01G0033700
rosa_samantha	Rh1AG044600 Rh1AG045100 Rh1AG045200 Rh1AG045600 Rh1AG046300 Rh1BG042300 Rh1BG043600 Rh1BG044800 Rh1CG047200 Rh1DG052300 Rh1DG052400 Rh1DG052800 Rh1DG054800
rosa_wichuraiana	Rw1G003980 Rw1G004000 Rw1G004080 Rw1G004120 Rw1G004140

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	2 cut(s)	145, 158
AcoI	YGGCCR	1 cut(s)	462
AcsI	RAATTY	1 cut(s)	82
AcuI	CTGAAG	1 cut(s)	459
AfaI	GTAC	3 cut(s)	160, 311, 324
AgsI	TTSAA	3 cut(s)	130, 193, 452
AluBI	AGCT	4 cut(s)	17, 92, 178, 251
AluI	AGCT	4 cut(s)	17, 92, 178, 251
AlwI	GGATC	2 cut(s)	145, 158
AlwNI	CAGNNNCTG	1 cut(s)	92
AoxI	GGCC	2 cut(s)	462, 489
ApeKI	GCWGC	1 cut(s)	14
ApoI	RAATTY	1 cut(s)	82
AspS9I	GGNCC	1 cut(s)	351
AsuHPI	GGTGA	1 cut(s)	44
AvaII	GGWCC	1 cut(s)	351
BalI	TGGCCA	1 cut(s)	464
BamHI	GGATCC	1 cut(s)	150
BauI	CACGAG	1 cut(s)	372
BbvI	GCAGC	1 cut(s)	26
BcgI	CGANNNNNNTGC	2 cut(s)	50, 84
BclI	TGATCA	1 cut(s)	208
BisI	GCNGC	1 cut(s)	15
BlsI	GCNGC	1 cut(s)	16
BmcAI	AGTACT	1 cut(s)	311
Bme18I	GGWCC	1 cut(s)	351
BmgT120I	GGNCC	1 cut(s)	351
BmiI	GGNNCC	2 cut(s)	152, 352
BmsI	GCATC	3 cut(s)	97, 278, 352
BpuEI	CTTGAG	1 cut(s)	424
Bse3DI	GCAATG	2 cut(s)	269, 337
BseGI	GGATG	3 cut(s)	13, 247, 367
BseMI	GCAATG	2 cut(s)	269, 337
BseMII	CTCAG	1 cut(s)	146
BseXI	GCAGC	1 cut(s)	26
BshFI	GGCC	2 cut(s)	464, 491
BslFI	GGGAC	4 cut(s)	364, 413, 422, 494
BsmFI	GGGAC	4 cut(s)	364, 413, 422, 494
BsnI	GGCC	2 cut(s)	464, 491
Bsp143I	GATC	3 cut(s)	63, 150, 208
BspANI	GGCC	2 cut(s)	464, 491
BspCNI	CTCAG	1 cut(s)	147
BspHI	TCATGA	1 cut(s)	133
BspLI	GGNNCC	2 cut(s)	152, 352
BspPI	GGATC	2 cut(s)	145, 158
BsrDI	GCAATG	2 cut(s)	269, 337
BssMI	GATC	3 cut(s)	63, 150, 208
BssSI	CACGAG	1 cut(s)	372
Bst2BI	CACGAG	1 cut(s)	372
Bst4CI	ACNGT	3 cut(s)	47, 56, 440
BstDEI	CTNAG	1 cut(s)	155
BstF5I	GGATG	3 cut(s)	13, 247, 367
BstKTI	GATC	3 cut(s)	66, 153, 211
BstMBI	GATC	3 cut(s)	63, 150, 208
BstMWI	GCNNNNNNNGC	1 cut(s)	77
BstV1I	GCAGC	1 cut(s)	26
BstX2I	RGATCY	1 cut(s)	150
BstYI	RGATCY	1 cut(s)	150
BsuRI	GGCC	2 cut(s)	464, 491
BtsCI	GGATG	3 cut(s)	13, 247, 367
BtsIMutI	CAGTG	1 cut(s)	445
CaiI	CAGNNNCTG	1 cut(s)	92
CciI	TCATGA	1 cut(s)	133
Cfr13I	GGNCC	1 cut(s)	351
Csp6I	GTAC	3 cut(s)	159, 310, 323
CviAII	CATG	3 cut(s)	104, 134, 181
CviQI	GTAC	3 cut(s)	159, 310, 323
DdeI	CTNAG	1 cut(s)	155
DpnI	GATC	3 cut(s)	65, 152, 210
DpnII	GATC	3 cut(s)	63, 150, 208
EaeI	YGGCCR	1 cut(s)	462
Eco147I	AGGCCT	1 cut(s)	491
Eco47I	GGWCC	1 cut(s)	351
Eco57I	CTGAAG	1 cut(s)	459
EcoO109I	RGGNCCY	1 cut(s)	351
FaeI	CATG	3 cut(s)	107, 137, 184
FaiI	YATR	7 cut(s)	43, 51, 105, 135, 182, 357, 486
FalI	AAGNNNNNCTT	2 cut(s)	296, 328
FaqI	GGGAC	4 cut(s)	364, 413, 422, 494
FatI	CATG	3 cut(s)	103, 133, 180
FbaI	TGATCA	1 cut(s)	208
Fnu4HI	GCNGC	1 cut(s)	15
FokI	GGATG	3 cut(s)	20, 254, 374
Fsp4HI	GCNGC	1 cut(s)	15
GluI	GCNGC	1 cut(s)	15
HaeIII	GGCC	2 cut(s)	464, 491
Hin1II	CATG	3 cut(s)	107, 137, 184
HphI	GGTGA	1 cut(s)	44
Hpy166II	GTNNAC	1 cut(s)	424
Hpy188I	TCNGA	1 cut(s)	88
Hpy188III	TCNNGA	5 cut(s)	134, 148, 154, 262, 449
Hpy8I	GTNNAC	1 cut(s)	424
HpyAV	CCTTC	3 cut(s)	259, 313, 502
HpyCH4III	ACNGT	3 cut(s)	47, 56, 440
HpyCH4V	TGCA	4 cut(s)	14, 71, 274, 335
HpyF10VI	GCNNNNNNNGC	1 cut(s)	77
HpyF3I	CTNAG	1 cut(s)	155
Hsp92II	CATG	3 cut(s)	107, 137, 184
Ksp22I	TGATCA	1 cut(s)	208
Kzo9I	GATC	3 cut(s)	63, 150, 208
LmnI	GCTCC	1 cut(s)	165
LpnPI	CCDG	6 cut(s)	133, 167, 197, 275, 440, 462
Lsp1109I	GCAGC	1 cut(s)	26
LweI	GCATC	3 cut(s)	97, 278, 352
MaeIII	GTNAC	3 cut(s)	32, 56, 382
MalI	GATC	3 cut(s)	65, 152, 210
MboI	GATC	3 cut(s)	63, 150, 208
MboII	GAAGA	2 cut(s)	149, 445
MflI	RGATCY	1 cut(s)	150
MlsI	TGGCCA	1 cut(s)	464
MluCI	AATT	3 cut(s)	82, 141, 378
MluNI	TGGCCA	1 cut(s)	464
MmeI	TCCRAC	1 cut(s)	219
MnlI	CCTC	8 cut(s)	238, 302, 352, 390, 399, 412, 456, 506
Mox20I	TGGCCA	1 cut(s)	464
MscI	TGGCCA	1 cut(s)	464
Msp20I	TGGCCA	1 cut(s)	464
MwoI	GCNNNNNNNGC	1 cut(s)	77
NdeII	GATC	3 cut(s)	63, 150, 208
NlaIII	CATG	3 cut(s)	107, 137, 184
NlaIV	GGNNCC	2 cut(s)	152, 352
NmuCI	GTSAC	1 cut(s)	32
PagI	TCATGA	1 cut(s)	133
PceI	AGGCCT	1 cut(s)	491
PkrI	GCNGC	1 cut(s)	16
PpuMI	RGGWCCY	1 cut(s)	351
Psp5II	RGGWCCY	1 cut(s)	351
PspN4I	GGNNCC	2 cut(s)	152, 352
PspPI	GGNCC	1 cut(s)	351
PspPPI	RGGWCCY	1 cut(s)	351
PstNI	CAGNNNCTG	1 cut(s)	92
PsuI	RGATCY	1 cut(s)	150
RsaI	GTAC	3 cut(s)	160, 311, 324
RsaNI	GTAC	3 cut(s)	159, 310, 323
SatI	GCNGC	1 cut(s)	15
Sau3AI	GATC	3 cut(s)	63, 150, 208
Sau96I	GGNCC	1 cut(s)	351
ScaI	AGTACT	1 cut(s)	311
SetI	ASST	7 cut(s)	19, 94, 180, 253, 324, 356, 423
SfaNI	GCATC	3 cut(s)	97, 278, 352
SinI	GGWCC	1 cut(s)	351
SmlI	CTYRAG	1 cut(s)	403
SmoI	CTYRAG	1 cut(s)	403
Sse9I	AATT	3 cut(s)	82, 141, 378
SseBI	AGGCCT	1 cut(s)	491
StuI	AGGCCT	1 cut(s)	491
TaaI	ACNGT	3 cut(s)	47, 56, 440
TaqI	TCGA	1 cut(s)	286
TasI	AATT	3 cut(s)	82, 141, 378
TatI	WGTACW	2 cut(s)	158, 309
TscAI	CASTG	1 cut(s)	445
TseFI	GTSAC	1 cut(s)	32
TseI	GCWGC	1 cut(s)	14
Tsp45I	GTSAC	1 cut(s)	32
TspDTI	ATGAA	1 cut(s)	150
TspRI	CASTG	1 cut(s)	445
VpaK11BI	GGWCC	1 cut(s)	351
XapI	RAATTY	1 cut(s)	82
ZrmI	AGTACT	1 cut(s)	311

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.