RchiOBHm_Chr1g0321551

Annexin-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
OG0001318
Physical Location & Seq
Reverse (-)
9081125 .. 9083254
2130 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ55159

Sequence Viewer

Length: 945 bp
ATGGCTACCCTTGTTTCTCCTCCAAATTTCTCTGCCAATGAAGATGCAGAAGCTCTTCGAAACTCTGTGAAAGGATGGGGGACTAATGAGAAGGCTATCATCTCCATCCTGGGTCATAGAAATGCATGTCAAAGAAAAGAGATCAGGGCAGCTTATGAGCAACTTTATCAAGAAGATCTTATCAAGCGCCTTGAGTCTGAGCTCTCTGGGGATTTTGAGAGAGCGGTGTACCGTTGGATATTGGATCCAGCAGATCGTGATGCAGTTTTGGCTAATGTGGCCATCAAGAAATCCAACACTGACTACAATGTCATCATAGAAATGTCCTGCGTTCACTCTCCTGAAGAGCTCCTAGCTGTAAGAAGAGCTTACCAGCTTCGCTACAAGCACTCTTTGGAAGAAGATCTAGCTGCGCACACCACCGGTGATATGCGCAAGCTTTTGGTTGCTTTGGTGACTGCTTACCGTTATGACGGTAACCAGATCAATGCAAAGTTGGCAAATTCAGAAGCTGCTATTGTTCACGATGCTATCAAAGACAAGGCTTTCAATCATGAAGAAATTATCAGGATCCTGAGTACAAGGAGCAAGACACAGCTCATGGCTACATTCAACAAATACAGAGATGATCAGGGCATTTCTATCAGCAAGGCTTTGTTGGATGAGGAAGCTAATGATTTCCAGAAGGCATTGCACACAGCCATTCGATGCCTCAATGACCCCAAGAAGTACTTTGAGAAGGTACTTCGCAATGCAATCAAAAGGCTTGGAAGCGATGAGGATGCTCTCACTCGTGTAATTGTTACAAGGGCAGAGAGGGACTTGAGGGACATAAAGGAGGTTTACTACAAGAAGAACAGTGTTCCTCTTGAACAGGCTGTGGCCAAAGACACTTCAGGGGACTATAAGGCCTTCCTCCTTACTCTGTTGGGAAAGGAAGATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Annexin

Protein Analysis

314

Amino Acids

35.71

Weight (kDa)

6.69

Isoelectric Point (pI)

36.18

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Annexin PF00191 15 - 76 6.5e-23 Annexin
Annexin PF00191 87 - 151 8.5e-15 Annexin
Annexin PF00191 170 - 232 5e-11 Annexin
Annexin PF00191 244 - 309 2.1e-17 Annexin
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 308
Acc16I TGCGCA 2 cut(s) 414, 434
AccBSI CCGCTC 1 cut(s) 224
AciI CCGC 1 cut(s) 224
AclWI GGATC 4 cut(s) 239, 252, 565, 578
AcoI YGGCCR 2 cut(s) 279, 882
AcsI RAATTY 2 cut(s) 25, 502
AcuI CTGAAG 2 cut(s) 363, 879
AfaI GTAC 4 cut(s) 230, 580, 731, 744
AgeI ACCGGT 1 cut(s) 422
AgsI TTSAA 3 cut(s) 550, 613, 872
AjnI CCWGG 1 cut(s) 108
Alw21I GWGCWC 2 cut(s) 204, 351
AlwI GGATC 4 cut(s) 239, 252, 565, 578
AlwNI CAGNNNCTG 1 cut(s) 512
AoxI GGCC 3 cut(s) 279, 882, 909
ApeKI GCWGC 3 cut(s) 149, 410, 512
ApoI RAATTY 2 cut(s) 25, 502
AsiGI ACCGGT 1 cut(s) 422
Asp700I GAANNNNTTC 1 cut(s) 54
AspLEI GCGC 3 cut(s) 189, 415, 435
AsuHPI GGTGA 2 cut(s) 437, 466
AsuII TTCGAA 1 cut(s) 58
BalI TGGCCA 2 cut(s) 281, 884
BamHI GGATCC 2 cut(s) 244, 570
BanII GRGCYC 2 cut(s) 204, 351
BauI CACGAG 1 cut(s) 792
Bbv12I GWGCWC 2 cut(s) 204, 351
BbvI GCAGC 3 cut(s) 161, 397, 499
BccI CCATC 3 cut(s) 69, 113, 290
BcgI CGANNNNNNTGC 2 cut(s) 764, 798
BciT130I CCWGG 1 cut(s) 110
BclI TGATCA 1 cut(s) 628
BfaI CTAG 2 cut(s) 353, 407
BfoI RGCGCY 1 cut(s) 190
BglII AGATCT 2 cut(s) 175, 403
BisI GCNGC 3 cut(s) 150, 411, 513
BlsI GCNGC 3 cut(s) 151, 412, 514
BmcAI AGTACT 1 cut(s) 731
Bme1390I CCNGG 1 cut(s) 110
BmiI GGNNCC 2 cut(s) 246, 572
BmrFI CCNGG 1 cut(s) 110
BmsI GCATC 5 cut(s) 34, 250, 517, 698, 772
Bpu14I TTCGAA 1 cut(s) 58
BpuEI CTTGAG 2 cut(s) 212, 844
BsaJI CCNNGG 1 cut(s) 109
BsaWI WCCGGW 1 cut(s) 422
Bse118I RCCGGY 1 cut(s) 422
Bse3DI GCAATG 2 cut(s) 689, 757
BseBI CCWGG 1 cut(s) 110
BseDI CCNNGG 1 cut(s) 109
BseGI GGATG 4 cut(s) 80, 105, 667, 787
BseMI GCAATG 2 cut(s) 689, 757
BseMII CTCAG 2 cut(s) 189, 566
BseRI GAGGAG 1 cut(s) 9
BseXI GCAGC 3 cut(s) 161, 397, 499
BshFI GGCC 3 cut(s) 281, 884, 911
BshTI ACCGGT 1 cut(s) 422
BsiHKAI GWGCWC 2 cut(s) 204, 351
BsiSI CCGG 1 cut(s) 423
BslFI GGGAC 4 cut(s) 94, 833, 842, 914
BsmFI GGGAC 4 cut(s) 94, 833, 842, 914
BsnI GGCC 3 cut(s) 281, 884, 911
Bsp119I TTCGAA 1 cut(s) 58
Bsp1286I GDGCHC 2 cut(s) 204, 351
Bsp143I GATC 8 cut(s) 141, 175, 244, 253, 403, 483, 570, 628
BspACI CCGC 1 cut(s) 224
BspANI GGCC 3 cut(s) 281, 884, 911
BspCNI CTCAG 2 cut(s) 190, 567
BspHI TCATGA 1 cut(s) 553
BspLI GGNNCC 2 cut(s) 246, 572
BspPI GGATC 4 cut(s) 239, 252, 565, 578
BspQI GCTCTTC 3 cut(s) 60, 339, 358
BspT104I TTCGAA 1 cut(s) 58
BsrBI CCGCTC 1 cut(s) 224
BsrDI GCAATG 2 cut(s) 689, 757
BsrFI RCCGGY 1 cut(s) 422
BssAI RCCGGY 1 cut(s) 422
BssECI CCNNGG 1 cut(s) 109
BssMI GATC 8 cut(s) 141, 175, 244, 253, 403, 483, 570, 628
BssSI CACGAG 1 cut(s) 792
Bst2BI CACGAG 1 cut(s) 792
Bst2UI CCWGG 1 cut(s) 110
Bst4CI ACNGT 4 cut(s) 233, 467, 476, 860
Bst6I CTCTTC 3 cut(s) 60, 339, 358
BstBI TTCGAA 1 cut(s) 58
BstC8I GCNNGC 1 cut(s) 437
BstDEI CTNAG 2 cut(s) 198, 575
BstEII GGTNACC 1 cut(s) 476
BstF5I GGATG 4 cut(s) 80, 105, 667, 787
BstH2I RGCGCY 1 cut(s) 190
BstHHI GCGC 3 cut(s) 189, 415, 435
BstKTI GATC 8 cut(s) 144, 178, 247, 256, 406, 486, 573, 631
BstMBI GATC 8 cut(s) 141, 175, 244, 253, 403, 483, 570, 628
BstMWI GCNNNNNNNGC 3 cut(s) 269, 278, 497
BstNI CCWGG 1 cut(s) 110
BstNSI RCATGY 1 cut(s) 129
BstPI GGTNACC 1 cut(s) 476
BstSCI CCNGG 1 cut(s) 108
BstV1I GCAGC 3 cut(s) 161, 397, 499
BstX2I RGATCY 4 cut(s) 175, 244, 403, 570
BstYI RGATCY 4 cut(s) 175, 244, 403, 570
BsuRI GGCC 3 cut(s) 281, 884, 911
BtgZI GCGATG 1 cut(s) 789
BtsCI GGATG 4 cut(s) 80, 105, 667, 787
BtsIMutI CAGTG 2 cut(s) 297, 865
Cac8I GCNNGC 1 cut(s) 437
CaiI CAGNNNCTG 1 cut(s) 512
CciI TCATGA 1 cut(s) 553
CfoI GCGC 3 cut(s) 189, 415, 435
Cfr10I RCCGGY 1 cut(s) 422
Csp6I GTAC 4 cut(s) 229, 579, 730, 743
CspAI ACCGGT 1 cut(s) 422
CviAII CATG 3 cut(s) 126, 554, 601
CviQI GTAC 4 cut(s) 229, 579, 730, 743
DdeI CTNAG 2 cut(s) 198, 575
DpnI GATC 8 cut(s) 143, 177, 246, 255, 405, 485, 572, 630
DpnII GATC 8 cut(s) 141, 175, 244, 253, 403, 483, 570, 628
DrdI GACNNNNNNGTC 1 cut(s) 308
DseDI GACNNNNNNGTC 1 cut(s) 308
EaeI YGGCCR 2 cut(s) 279, 882
Eam1104I CTCTTC 3 cut(s) 60, 339, 358
EarI CTCTTC 3 cut(s) 60, 339, 358
Ecl136II GAGCTC 2 cut(s) 202, 349
Eco147I AGGCCT 1 cut(s) 911
Eco24I GRGCYC 2 cut(s) 204, 351
Eco53kI GAGCTC 2 cut(s) 202, 349
Eco57I CTGAAG 2 cut(s) 363, 879
Eco91I GGTNACC 1 cut(s) 476
EcoICRI GAGCTC 2 cut(s) 202, 349
EcoO65I GGTNACC 1 cut(s) 476
EcoRII CCWGG 1 cut(s) 108
EcoT22I ATGCAT 1 cut(s) 127
EcoT38I GRGCYC 2 cut(s) 204, 351
FaeI CATG 3 cut(s) 129, 557, 604
FalI AAGNNNNNCTT 6 cut(s) 162, 194, 352, 384, 716, 748
FaqI GGGAC 4 cut(s) 94, 833, 842, 914
FatI CATG 3 cut(s) 125, 553, 600
FbaI TGATCA 1 cut(s) 628
Fnu4HI GCNGC 3 cut(s) 150, 411, 513
FokI GGATG 4 cut(s) 87, 92, 674, 794
FriOI GRGCYC 2 cut(s) 204, 351
Fsp4HI GCNGC 3 cut(s) 150, 411, 513
FspBI CTAG 2 cut(s) 353, 407
FspI TGCGCA 2 cut(s) 414, 434
GlaI GCGC 3 cut(s) 188, 414, 434
GluI GCNGC 3 cut(s) 150, 411, 513
HaeII RGCGCY 1 cut(s) 190
HaeIII GGCC 3 cut(s) 281, 884, 911
HapII CCGG 1 cut(s) 423
HhaI GCGC 3 cut(s) 189, 415, 435
Hin1II CATG 3 cut(s) 129, 557, 604
Hin6I GCGC 3 cut(s) 187, 413, 433
HinP1I GCGC 3 cut(s) 187, 413, 433
HindIII AAGCTT 1 cut(s) 437
HinfI GANTC 1 cut(s) 194
HpaII CCGG 1 cut(s) 423
HphI GGTGA 2 cut(s) 437, 466
Hpy166II GTNNAC 4 cut(s) 229, 334, 523, 844
Hpy188I TCNGA 2 cut(s) 199, 508
Hpy8I GTNNAC 4 cut(s) 229, 334, 523, 844
HpyAV CCTTC 4 cut(s) 85, 679, 733, 922
HpyCH4III ACNGT 4 cut(s) 233, 467, 476, 860
HpyCH4V TGCA 6 cut(s) 47, 125, 263, 491, 694, 755
HpyF10VI GCNNNNNNNGC 3 cut(s) 269, 278, 497
HpyF3I CTNAG 2 cut(s) 198, 575
Hsp92II CATG 3 cut(s) 129, 557, 604
HspAI GCGC 3 cut(s) 187, 413, 433
Ksp22I TGATCA 1 cut(s) 628
Kzo9I GATC 8 cut(s) 141, 175, 244, 253, 403, 483, 570, 628
LguI GCTCTTC 3 cut(s) 60, 339, 358
LmnI GCTCC 2 cut(s) 354, 585
Lsp1109I GCAGC 3 cut(s) 161, 397, 499
LweI GCATC 5 cut(s) 34, 250, 517, 698, 772
MaeI CTAG 2 cut(s) 353, 407
MaeIII GTNAC 3 cut(s) 454, 476, 802
MalI GATC 8 cut(s) 143, 177, 246, 255, 405, 485, 572, 630
MbiI CCGCTC 1 cut(s) 224
MboI GATC 8 cut(s) 141, 175, 244, 253, 403, 483, 570, 628
MboII GAAGA 9 cut(s) 47, 53, 185, 356, 375, 410, 413, 569, 865
MflI RGATCY 4 cut(s) 175, 244, 403, 570
MhlI GDGCHC 2 cut(s) 204, 351
MlsI TGGCCA 2 cut(s) 281, 884
MluCI AATT 4 cut(s) 25, 502, 561, 798
MluNI TGGCCA 2 cut(s) 281, 884
MlyI GAGTC 1 cut(s) 203
MmeI TCCRAC 3 cut(s) 215, 318, 639
MnlI CCTC 9 cut(s) 30, 658, 722, 772, 810, 819, 832, 876, 926
Mox20I TGGCCA 2 cut(s) 281, 884
Mph1103I ATGCAT 1 cut(s) 127
MroXI GAANNNNTTC 1 cut(s) 54
MscI TGGCCA 2 cut(s) 281, 884
MslI CAYNNNNRTG 2 cut(s) 120, 320
Msp20I TGGCCA 2 cut(s) 281, 884
MspI CCGG 1 cut(s) 423
MspR9I CCNGG 1 cut(s) 110
MvaI CCWGG 1 cut(s) 110
MwoI GCNNNNNNNGC 3 cut(s) 269, 278, 497
NdeII GATC 8 cut(s) 141, 175, 244, 253, 403, 483, 570, 628
NlaIII CATG 3 cut(s) 129, 557, 604
NlaIV GGNNCC 2 cut(s) 246, 572
NmuCI GTSAC 1 cut(s) 454
NsbI TGCGCA 2 cut(s) 414, 434
NsiI ATGCAT 1 cut(s) 127
NspI RCATGY 1 cut(s) 129
NspV TTCGAA 1 cut(s) 58
PagI TCATGA 1 cut(s) 553
PceI AGGCCT 1 cut(s) 911
PciSI GCTCTTC 3 cut(s) 60, 339, 358
PdmI GAANNNNTTC 1 cut(s) 54
PinAI ACCGGT 1 cut(s) 422
PkrI GCNGC 3 cut(s) 151, 412, 514
PleI GAGTC 1 cut(s) 202
PpsI GAGTC 1 cut(s) 202
Psp124BI GAGCTC 2 cut(s) 204, 351
Psp6I CCWGG 1 cut(s) 108
PspEI GGTNACC 1 cut(s) 476
PspGI CCWGG 1 cut(s) 108
PspN4I GGNNCC 2 cut(s) 246, 572
PstNI CAGNNNCTG 1 cut(s) 512
PsuI RGATCY 4 cut(s) 175, 244, 403, 570
RsaI GTAC 4 cut(s) 230, 580, 731, 744
RsaNI GTAC 4 cut(s) 229, 579, 730, 743
RseI CAYNNNNRTG 2 cut(s) 120, 320
SacI GAGCTC 2 cut(s) 204, 351
SapI GCTCTTC 3 cut(s) 60, 339, 358
SatI GCNGC 3 cut(s) 150, 411, 513
Sau3AI GATC 8 cut(s) 141, 175, 244, 253, 403, 483, 570, 628
ScaI AGTACT 1 cut(s) 731
SchI GAGTC 1 cut(s) 203
ScrFI CCNGG 1 cut(s) 110
SduI GDGCHC 2 cut(s) 204, 351
SfaNI GCATC 5 cut(s) 34, 250, 517, 698, 772
SfuI TTCGAA 1 cut(s) 58
SgrAI CRCCGGYG 1 cut(s) 422
SmiMI CAYNNNNRTG 2 cut(s) 120, 320
SmlI CTYRAG 2 cut(s) 191, 823
SmoI CTYRAG 2 cut(s) 191, 823
Sse9I AATT 4 cut(s) 25, 502, 561, 798
SseBI AGGCCT 1 cut(s) 911
SsiI CCGC 1 cut(s) 224
SspMI CTAG 2 cut(s) 353, 407
SstI GAGCTC 2 cut(s) 204, 351
StuI AGGCCT 1 cut(s) 911
StyD4I CCNGG 1 cut(s) 108
TaaI ACNGT 4 cut(s) 233, 467, 476, 860
TaqI TCGA 2 cut(s) 58, 706
TasI AATT 4 cut(s) 25, 502, 561, 798
TatI WGTACW 2 cut(s) 578, 729
TscAI CASTG 2 cut(s) 304, 865
TseFI GTSAC 1 cut(s) 454
TseI GCWGC 3 cut(s) 149, 410, 512
Tsp45I GTSAC 1 cut(s) 454
TspDTI ATGAA 2 cut(s) 54, 570
TspRI CASTG 2 cut(s) 304, 865
XapI RAATTY 2 cut(s) 25, 502
XceI RCATGY 1 cut(s) 129
XmnI GAANNNNTTC 1 cut(s) 54
XspI CTAG 2 cut(s) 353, 407
ZrmI AGTACT 1 cut(s) 731
Zsp2I ATGCAT 1 cut(s) 127
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.