Rw1G004140

Annexin-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr1
OG0001318
Physical Location & Seq
Reverse (-)
7762753 .. 7777517
14765 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw1G004140.1

Sequence Viewer

Length: 1110 bp
ATGAGCGTCTGGAACTACGTCGTCACGGCCCACAAGCCCACCAACCCTGTCTTGGATGTGCCGATATATGGACGAATTGCAACCCTTAAACTTTTTCGGCCACATGGTGAAGCCCAGGATTTTCTGTTTATTGCAAGAGAAAGATACAAGTTTTGTGTCCTTCAGTGGGATGTTGAAACGCAAGAGCTTATTACCAAGGCAATGGGTGATGTCTCAGATCGTATAGGTCGTCCTACAGACAGCGGTCAGATTGGTATAATAGATCCAGATTGCAGATTAATTGGACTTCATTTGTATGATGGCTTGTTTAAGGTTATTCCTTTCGACAATAAAGGGCAGCTGAAGGAAGCATTTAACATTAGGCTTGAGGAACTTCAAGTTTTAGATATCAAGTTTCTTTATGGTTGTTCAAAACCCACAATTGTAGTTCTTTACCAGAGAGCGGTGTACCGGTGGATATTGGATCCAGCAGATTGTGATGCAGTTTCGGCTAATGTGGCCATCAAGAAATCCAACACTGACTACAATGTCATCATAGAAATGTCCTGCATTCACTCTCCTGAAGAGCTCCTAGCTGTAAGAAGAGCTTACCAGCTTCGCTACAACCACTCGTTGGAAGAAGATCTAGCTGCACATACCACCGGTGATATGTGCAAGATCAATGCAAAGTTGGCAAATTCAGAAGCTGATATTCTTCATGATGCTATCAAAGACAAGGCTTTCAATCATGAAGAAATTATCAGGATCCTGAGTACAAGGAGCAAGACACAGCTCATGGCTACATTCAACAAATACAGAAATGATCAGGGCATTTCTATCAGCAAGGCTTTGTTGGATGAGGAAGCTAATGATTTCCAGAAGGCATTGCACACAGCCATTCGATGCCTCAATGACTCCAAGAAGTACTTTGAGAAGGTACTTCGCAATGCAATCAAAACTCTTGGGACCGATGAGGATGCTCTCACTCGTGTAATTGTTACAAGGGCAGAGAGGGACTTGAGGGACATCAAGGAGGTTTACTACAAGAAGAACAGTGTTCCTCTTGAACAGGCTGTGGCCAAAGACACTTCAGGGGACTATAAGGCCTTCCTCCTTACTCTGTTGGGATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Annexin

Protein Analysis

369

Amino Acids

42.06

Weight (kDa)

6.52

Isoelectric Point (pI)

32.81

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Beta-prop_RSE1_1st PF10433 15 - 148 1.3e-28 RSE1/DDB1/CPSF1 first beta-propeller
Annexin PF00191 164 - 219 9.9e-11 Annexin
Annexin PF00191 228 - 290 5.8e-12 Annexin
Annexin PF00191 302 - 367 8.8e-18 Annexin
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 527
AccB7I CCANNNNNTGG 1 cut(s) 613
AccBSI CCGCTC 1 cut(s) 443
AciI CCGC 2 cut(s) 243, 443
AclWI GGATC 5 cut(s) 257, 458, 471, 739, 752
AcoI YGGCCR 3 cut(s) 98, 498, 1056
AcsI RAATTY 1 cut(s) 676
AcuI CTGAAG 4 cut(s) 146, 362, 582, 1053
AdeI CACNNNGTG 1 cut(s) 107
AfaI GTAC 4 cut(s) 449, 754, 905, 918
AfiI CCNNNNNNNGG 5 cut(s) 52, 68, 166, 442, 613
AgeI ACCGGT 2 cut(s) 450, 641
AgsI TTSAA 6 cut(s) 176, 377, 411, 724, 787, 1046
AjnI CCWGG 1 cut(s) 114
Alw21I GWGCWC 1 cut(s) 570
Alw26I GTCTC 1 cut(s) 217
AlwI GGATC 5 cut(s) 257, 458, 471, 739, 752
AlwNI CAGNNNCTG 1 cut(s) 686
AoxI GGCC 5 cut(s) 27, 98, 498, 1056, 1083
ApeKI GCWGC 2 cut(s) 337, 629
ApoI RAATTY 1 cut(s) 676
AseI ATTAAT 1 cut(s) 278
AsiGI ACCGGT 2 cut(s) 450, 641
AspS9I GGNCC 2 cut(s) 28, 945
AsuHPI GGTGA 3 cut(s) 119, 218, 656
AvaII GGWCC 1 cut(s) 945
BalI TGGCCA 2 cut(s) 500, 1058
BamHI GGATCC 2 cut(s) 463, 744
BanII GRGCYC 1 cut(s) 570
BauI CACGAG 1 cut(s) 966
Bbv12I GWGCWC 1 cut(s) 570
BbvI GCAGC 2 cut(s) 349, 616
BccI CCATC 2 cut(s) 293, 509
BceAI ACGGC 1 cut(s) 42
BcgI CGANNNNNNTGC 2 cut(s) 938, 972
BciT130I CCWGG 1 cut(s) 116
BclI TGATCA 1 cut(s) 802
BcoDI GTCTC 1 cut(s) 217
BfaI CTAG 2 cut(s) 572, 626
BfmI CTRYAG 1 cut(s) 234
BglII AGATCT 1 cut(s) 622
BisI GCNGC 2 cut(s) 338, 630
BlsI GCNGC 2 cut(s) 339, 631
BmcAI AGTACT 1 cut(s) 905
Bme1390I CCNGG 1 cut(s) 116
Bme18I GGWCC 1 cut(s) 945
BmgT120I GGNCC 2 cut(s) 28, 945
BmiI GGNNCC 3 cut(s) 465, 746, 946
BmrFI CCNGG 1 cut(s) 116
BmsI GCATC 4 cut(s) 469, 691, 872, 946
BoxI GACNNNNGTC 1 cut(s) 243
BpuEI CTTGAG 2 cut(s) 386, 1018
BsaJI CCNNGG 2 cut(s) 114, 195
BsaWI WCCGGW 2 cut(s) 450, 641
Bsc4I CCNNNNNNNGG 5 cut(s) 52, 68, 166, 442, 613
Bse118I RCCGGY 2 cut(s) 450, 641
Bse3DI GCAATG 3 cut(s) 207, 863, 931
BseBI CCWGG 1 cut(s) 116
BseDI CCNNGG 2 cut(s) 114, 195
BseGI GGATG 4 cut(s) 61, 175, 841, 961
BseLI CCNNNNNNNGG 5 cut(s) 52, 68, 166, 442, 613
BseMI GCAATG 3 cut(s) 207, 863, 931
BseMII CTCAG 2 cut(s) 228, 740
BseXI GCAGC 2 cut(s) 349, 616
BsgI GTGCAG 1 cut(s) 615
BshFI GGCC 5 cut(s) 29, 100, 500, 1058, 1085
BshTI ACCGGT 2 cut(s) 450, 641
BsiHKAI GWGCWC 1 cut(s) 570
BsiSI CCGG 2 cut(s) 451, 642
BslFI GGGAC 4 cut(s) 958, 1007, 1016, 1088
BslI CCNNNNNNNGG 5 cut(s) 52, 68, 166, 442, 613
BsmAI GTCTC 1 cut(s) 217
BsmFI GGGAC 4 cut(s) 958, 1007, 1016, 1088
BsmI GAATGC 1 cut(s) 549
BsnI GGCC 5 cut(s) 29, 100, 500, 1058, 1085
Bsp1286I GDGCHC 1 cut(s) 570
Bsp143I GATC 7 cut(s) 217, 262, 463, 622, 657, 744, 802
BspACI CCGC 2 cut(s) 243, 443
BspANI GGCC 5 cut(s) 29, 100, 500, 1058, 1085
BspCNI CTCAG 2 cut(s) 227, 741
BspHI TCATGA 2 cut(s) 697, 727
BspLI GGNNCC 3 cut(s) 465, 746, 946
BspPI GGATC 5 cut(s) 257, 458, 471, 739, 752
BspQI GCTCTTC 2 cut(s) 558, 577
BsrBI CCGCTC 1 cut(s) 443
BsrDI GCAATG 3 cut(s) 207, 863, 931
BsrFI RCCGGY 2 cut(s) 450, 641
BssAI RCCGGY 2 cut(s) 450, 641
BssECI CCNNGG 2 cut(s) 114, 195
BssMI GATC 7 cut(s) 217, 262, 463, 622, 657, 744, 802
BssSI CACGAG 1 cut(s) 966
BssT1I CCWWGG 1 cut(s) 195
Bst2BI CACGAG 1 cut(s) 966
Bst2UI CCWGG 1 cut(s) 116
Bst4CI ACNGT 1 cut(s) 1034
Bst6I CTCTTC 2 cut(s) 558, 577
BstDEI CTNAG 2 cut(s) 214, 749
BstF5I GGATG 4 cut(s) 61, 175, 841, 961
BstKTI GATC 7 cut(s) 220, 265, 466, 625, 660, 747, 805
BstMAI GTCTC 1 cut(s) 217
BstMBI GATC 7 cut(s) 217, 262, 463, 622, 657, 744, 802
BstMWI GCNNNNNNNGC 3 cut(s) 488, 497, 671
BstNI CCWGG 1 cut(s) 116
BstPAI GACNNNNGTC 1 cut(s) 243
BstSCI CCNGG 1 cut(s) 114
BstSFI CTRYAG 1 cut(s) 234
BstV1I GCAGC 2 cut(s) 349, 616
BstX2I RGATCY 4 cut(s) 262, 463, 622, 744
BstXI CCANNNNNNTGG 1 cut(s) 202
BstYI RGATCY 4 cut(s) 262, 463, 622, 744
BsuRI GGCC 5 cut(s) 29, 100, 500, 1058, 1085
BtsCI GGATG 4 cut(s) 61, 175, 841, 961
BtsIMutI CAGTG 3 cut(s) 170, 516, 1039
CaiI CAGNNNCTG 1 cut(s) 686
CciI TCATGA 2 cut(s) 697, 727
Cfr10I RCCGGY 2 cut(s) 450, 641
Cfr13I GGNCC 2 cut(s) 28, 945
Csp6I GTAC 4 cut(s) 448, 753, 904, 917
CspAI ACCGGT 2 cut(s) 450, 641
CviAII CATG 4 cut(s) 104, 698, 728, 775
CviQI GTAC 4 cut(s) 448, 753, 904, 917
DdeI CTNAG 2 cut(s) 214, 749
DpnI GATC 7 cut(s) 219, 264, 465, 624, 659, 746, 804
DpnII GATC 7 cut(s) 217, 262, 463, 622, 657, 744, 802
DraIII CACNNNGTG 1 cut(s) 107
DrdI GACNNNNNNGTC 1 cut(s) 527
DseDI GACNNNNNNGTC 1 cut(s) 527
EaeI YGGCCR 3 cut(s) 98, 498, 1056
Eam1104I CTCTTC 2 cut(s) 558, 577
EarI CTCTTC 2 cut(s) 558, 577
Ecl136II GAGCTC 1 cut(s) 568
Eco130I CCWWGG 1 cut(s) 195
Eco147I AGGCCT 1 cut(s) 1085
Eco24I GRGCYC 1 cut(s) 570
Eco32I GATATC 1 cut(s) 388
Eco47I GGWCC 1 cut(s) 945
Eco53kI GAGCTC 1 cut(s) 568
Eco57I CTGAAG 4 cut(s) 146, 362, 582, 1053
EcoICRI GAGCTC 1 cut(s) 568
EcoRII CCWGG 1 cut(s) 114
EcoRV GATATC 1 cut(s) 388
EcoT14I CCWWGG 1 cut(s) 195
EcoT38I GRGCYC 1 cut(s) 570
ErhI CCWWGG 1 cut(s) 195
FaeI CATG 4 cut(s) 107, 701, 731, 778
FalI AAGNNNNNCTT 4 cut(s) 571, 603, 890, 922
FaqI GGGAC 4 cut(s) 958, 1007, 1016, 1088
FatI CATG 4 cut(s) 103, 697, 727, 774
FbaI TGATCA 1 cut(s) 802
Fnu4HI GCNGC 2 cut(s) 338, 630
FokI GGATG 4 cut(s) 68, 182, 848, 968
FriOI GRGCYC 1 cut(s) 570
Fsp4HI GCNGC 2 cut(s) 338, 630
FspBI CTAG 2 cut(s) 572, 626
GluI GCNGC 2 cut(s) 338, 630
HaeIII GGCC 5 cut(s) 29, 100, 500, 1058, 1085
HapII CCGG 2 cut(s) 451, 642
Hin1II CATG 4 cut(s) 107, 701, 731, 778
HinfI GANTC 1 cut(s) 893
HpaII CCGG 2 cut(s) 451, 642
HphI GGTGA 3 cut(s) 119, 218, 656
Hpy166II GTNNAC 2 cut(s) 448, 1018
Hpy188I TCNGA 3 cut(s) 217, 249, 682
Hpy8I GTNNAC 2 cut(s) 448, 1018
Hpy99I CGWCG 1 cut(s) 23
HpyAV CCTTC 5 cut(s) 170, 337, 853, 907, 1096
HpyCH4III ACNGT 1 cut(s) 1034
HpyCH4IV ACGT 1 cut(s) 18
HpyF10VI GCNNNNNNNGC 3 cut(s) 488, 497, 671
HpyF3I CTNAG 2 cut(s) 214, 749
HpySE526I ACGT 1 cut(s) 18
Hsp92II CATG 4 cut(s) 107, 701, 731, 778
Ksp22I TGATCA 1 cut(s) 802
Kzo9I GATC 7 cut(s) 217, 262, 463, 622, 657, 744, 802
LguI GCTCTTC 2 cut(s) 558, 577
LmnI GCTCC 2 cut(s) 573, 759
Lsp1109I GCAGC 2 cut(s) 349, 616
LweI GCATC 4 cut(s) 469, 691, 872, 946
MaeI CTAG 2 cut(s) 572, 626
MaeII ACGT 1 cut(s) 18
MaeIII GTNAC 2 cut(s) 22, 976
MalI GATC 7 cut(s) 219, 264, 465, 624, 659, 746, 804
MbiI CCGCTC 1 cut(s) 443
MboI GATC 7 cut(s) 217, 262, 463, 622, 657, 744, 802
MboII GAAGA 7 cut(s) 575, 594, 629, 632, 686, 743, 1039
MfeI CAATTG 1 cut(s) 420
MflI RGATCY 4 cut(s) 262, 463, 622, 744
MhlI GDGCHC 1 cut(s) 570
MlsI TGGCCA 2 cut(s) 500, 1058
MluCI AATT 6 cut(s) 75, 279, 420, 676, 735, 972
MluNI TGGCCA 2 cut(s) 500, 1058
MlyI GAGTC 1 cut(s) 887
MmeI TCCRAC 3 cut(s) 537, 594, 813
MnlI CCTC 9 cut(s) 361, 832, 896, 946, 984, 993, 1006, 1050, 1100
Mox20I TGGCCA 2 cut(s) 500, 1058
MscI TGGCCA 2 cut(s) 500, 1058
MseI TTAA 4 cut(s) 87, 278, 309, 354
MslI CAYNNNNRTG 2 cut(s) 294, 539
Msp20I TGGCCA 2 cut(s) 500, 1058
MspA1I CMGCKG 2 cut(s) 243, 340
MspI CCGG 2 cut(s) 451, 642
MspR9I CCNGG 1 cut(s) 116
MunI CAATTG 1 cut(s) 420
Mva1269I GAATGC 1 cut(s) 549
MvaI CCWGG 1 cut(s) 116
MwoI GCNNNNNNNGC 3 cut(s) 488, 497, 671
NdeII GATC 7 cut(s) 217, 262, 463, 622, 657, 744, 802
NlaIII CATG 4 cut(s) 107, 701, 731, 778
NlaIV GGNNCC 3 cut(s) 465, 746, 946
NmuCI GTSAC 1 cut(s) 22
PagI TCATGA 2 cut(s) 697, 727
PceI AGGCCT 1 cut(s) 1085
PciSI GCTCTTC 2 cut(s) 558, 577
PcsI WCGNNNNNNNCGW 1 cut(s) 226
PctI GAATGC 1 cut(s) 549
PflMI CCANNNNNTGG 1 cut(s) 613
PinAI ACCGGT 2 cut(s) 450, 641
PkrI GCNGC 2 cut(s) 339, 631
PleI GAGTC 1 cut(s) 887
PpsI GAGTC 1 cut(s) 887
PshAI GACNNNNGTC 1 cut(s) 243
PshBI ATTAAT 1 cut(s) 278
Psp124BI GAGCTC 1 cut(s) 570
Psp6I CCWGG 1 cut(s) 114
PspGI CCWGG 1 cut(s) 114
PspN4I GGNNCC 3 cut(s) 465, 746, 946
PspPI GGNCC 2 cut(s) 28, 945
PstNI CAGNNNCTG 1 cut(s) 686
PsuI RGATCY 4 cut(s) 262, 463, 622, 744
PvuII CAGCTG 1 cut(s) 340
RsaI GTAC 4 cut(s) 449, 754, 905, 918
RsaNI GTAC 4 cut(s) 448, 753, 904, 917
RseI CAYNNNNRTG 2 cut(s) 294, 539
SacI GAGCTC 1 cut(s) 570
SapI GCTCTTC 2 cut(s) 558, 577
SaqAI TTAA 4 cut(s) 87, 278, 309, 354
SatI GCNGC 2 cut(s) 338, 630
Sau3AI GATC 7 cut(s) 217, 262, 463, 622, 657, 744, 802
Sau96I GGNCC 2 cut(s) 28, 945
ScaI AGTACT 1 cut(s) 905
SchI GAGTC 1 cut(s) 887
ScrFI CCNGG 1 cut(s) 116
SduI GDGCHC 1 cut(s) 570
SfaNI GCATC 4 cut(s) 469, 691, 872, 946
SfcI CTRYAG 1 cut(s) 234
SgrAI CRCCGGYG 1 cut(s) 641
SinI GGWCC 1 cut(s) 945
SmiMI CAYNNNNRTG 2 cut(s) 294, 539
SmlI CTYRAG 2 cut(s) 365, 997
SmoI CTYRAG 2 cut(s) 365, 997
Sse9I AATT 6 cut(s) 75, 279, 420, 676, 735, 972
SseBI AGGCCT 1 cut(s) 1085
SsiI CCGC 2 cut(s) 243, 443
SspMI CTAG 2 cut(s) 572, 626
SstI GAGCTC 1 cut(s) 570
StuI AGGCCT 1 cut(s) 1085
StyD4I CCNGG 1 cut(s) 114
StyI CCWWGG 1 cut(s) 195
TaaI ACNGT 1 cut(s) 1034
TaiI ACGT 1 cut(s) 21
TaqI TCGA 2 cut(s) 324, 880
TaqII GACCGA 1 cut(s) 962
TasI AATT 6 cut(s) 75, 279, 420, 676, 735, 972
TatI WGTACW 2 cut(s) 752, 903
Tru1I TTAA 4 cut(s) 87, 278, 309, 354
Tru9I TTAA 4 cut(s) 87, 278, 309, 354
TscAI CASTG 3 cut(s) 170, 523, 1039
TseFI GTSAC 1 cut(s) 22
TseI GCWGC 2 cut(s) 337, 629
Tsp45I GTSAC 1 cut(s) 22
TspDTI ATGAA 3 cut(s) 278, 686, 744
TspRI CASTG 3 cut(s) 170, 523, 1039
Van91I CCANNNNNTGG 1 cut(s) 613
VpaK11BI GGWCC 1 cut(s) 945
VspI ATTAAT 1 cut(s) 278
XapI RAATTY 1 cut(s) 676
XcmI CCANNNNNNNNNTGG 1 cut(s) 49
XspI CTAG 2 cut(s) 572, 626
ZrmI AGTACT 1 cut(s) 905
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.