Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr02

Orthogroup ID

OG0001318

Physical Location & Seq

Genomic Coordinates Forward (+)

34675067 .. 34677939

Gene Structure 2873 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD02G1291000.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 942 bp

ATGGCAACCCTCACTGTTCCAGATCACTTCTCTTCTAACGAGGATGCAGAAGCTCTCAGAAAGGCATGCAAAGGATGGGGGACTGATGAGAAGGCTATAATCTCTATTCTGGGACACAGAAATGCGGCACAGAGAAAGCAAATCAGGCTTGCTTATGAGCAGTCTTATCAAGAAGATCTTCTCAAACGCCTTGAATCCGAGCTTTCTGGGGATTTTGAGAAAGCTGTGTACCGTTGGATCTTGGATCCTGCAGATCGAGATGCTGTTTTGGCTCATGTGGCCATCAAGAAATCTGGGTGTAACTACAATGTCATCATCGAAATTGGAACCATACTATCTCCTGAAGAGCTCTTTGCAGTAAGGAAAGCTTACCAAGTTCGCTACAAGCACTCCTTGGAGGAAGACTTGGCTGCCCACACCACTGGTGATATCCGAAAGCTTCTGGTTGCTTTAGTGACTGCGTATCGTTATGACGGTGGCGAGATCAATGCAAAACTGGCAAAATCGGAAGCTGATATTCTTCATGATGCTATCAAAGACAAGGCTTTCAATCATGATGAAATTATTAGGATCCTCAGTACTAGGAGCAAGACTCAGCTCATGGCAACCTTTAACCACTACCGAGATGACCATAAAATTTCCATCAGTAAGACTTTGTTGGAAGAGGGTGCTGATGATCTCCAGAAGGCACTGCATGTAGTCATTAGATGCCTCAATGACCACAAGAAGTACTTTGAGAAGGTTCTTCGCAATGGTATCAGGAGGCTTGGGACCGATGAGGATGCTCTCACTCGTGTGATTGTGATGAGGGCTGAGAGGGACTTGAAGGACATCAAGGAGGTTTACTACAAGAAAAACAGCGTTCCTCTCGAACATGCTGTGGCTAAAGACACTTCCGGGGATTACAAGGACTTCCTCCTTACTCTGCTGGGGAAGGAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Annexin

Protein Analysis

314

Amino Acids

35.68

Weight (kDa)

6.88

Isoelectric Point (pI)

35.12

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Annexin	PF00191	15 - 76	9.5e-25	Annexin
Annexin	PF00191	87 - 151	5e-15	Annexin
Annexin	PF00191	170 - 232	1.5e-11	Annexin
Annexin	PF00191	244 - 309	2e-16	Annexin

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001318)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G12380
fragaria_vesca	FvH4_7g02680 FvH4_7g02680
malus_domestica	MD02G1291000.v1.1 MD07G1035500.v1.1 MD07G1036200.v1.1 MD07G1036300.v1.1
prunus_persica	Prupe.2G031900_v2.0.a1 Prupe.2G031900_v2.0.a1
pyrus_communis	pycom02g24600 pycom07g02490 pycom07g02500
rosa_chinensis	RchiOBHm_Chr1g0321371 RchiOBHm_Chr1g0321531 RchiOBHm_Chr1g0321551 RchiOBHm_Chr1g0321701
rosa_laevigata	RLG00000030411 RLG00000030414 RLG00000030418
rosa_multiflora	Rmu_sc0000087.1_g000010 Rmu_sc0000087.1_g000013 Rmu_sc0000196.1_g000001 Rmu_sc0000724.1_g000024 Rmu_sc0000724.1_g000032 Rmu_sc0000960.1_g000004 Rmu_sc0003410.1_g000041 Rmu_sc0003410.1_g000044 Rmu_sc0025973.1_g000001
rosa_roxburghii	Rroxscaffold_160G00434000 Rroxscaffold_4G00327530 Rroxscaffold_4G00327560 Rroxscaffold_4G00327790
rosa_rugosa	Rorug01G0033300 Rorug01G0033500 Rorug01G0033600 Rorug01G0033700
rosa_samantha	Rh1AG044600 Rh1AG045100 Rh1AG045200 Rh1AG045600 Rh1AG046300 Rh1BG042300 Rh1BG043600 Rh1BG044800 Rh1CG047200 Rh1DG052300 Rh1DG052400 Rh1DG052800 Rh1DG054800
rosa_wichuraiana	Rw1G003980 Rw1G004000 Rw1G004080 Rw1G004120 Rw1G004140

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	125
AclWI	GGATC	5 cut(s)	239, 245, 252, 565, 578
AcoI	YGGCCR	1 cut(s)	279
AcsI	RAATTY	1 cut(s)	636
AcuI	CTGAAG	1 cut(s)	363
AfaI	GTAC	3 cut(s)	230, 580, 731
AgsI	TTSAA	3 cut(s)	194, 550, 826
AleI	CACNNNNGTG	1 cut(s)	794
AluBI	AGCT	8 cut(s)	53, 202, 224, 349, 368, 439, 512, 598
AluI	AGCT	8 cut(s)	53, 202, 224, 349, 368, 439, 512, 598
Alw21I	GWGCWC	1 cut(s)	351
AlwI	GGATC	5 cut(s)	239, 245, 252, 565, 578
AoxI	GGCC	1 cut(s)	279
ApeKI	GCWGC	1 cut(s)	410
ApoI	RAATTY	1 cut(s)	636
Asp700I	GAANNNNTTC	1 cut(s)	177
AspS9I	GGNCC	1 cut(s)	771
AsuC2I	CCSGG	1 cut(s)	898
AsuHPI	GGTGA	1 cut(s)	437
AvaII	GGWCC	1 cut(s)	771
BalI	TGGCCA	1 cut(s)	281
BamHI	GGATCC	2 cut(s)	244, 570
BanII	GRGCYC	1 cut(s)	351
BauI	CACGAG	1 cut(s)	792
BbsI	GAAGAC	1 cut(s)	408
Bbv12I	GWGCWC	1 cut(s)	351
BbvI	GCAGC	1 cut(s)	397
BccI	CCATC	3 cut(s)	69, 290, 650
BcgI	CGANNNNNNTGC	4 cut(s)	470, 504, 764, 798
BcnI	CCSGG	1 cut(s)	898
BfaI	CTAG	1 cut(s)	582
BfmI	CTRYAG	1 cut(s)	249
BglII	AGATCT	1 cut(s)	175
BisI	GCNGC	2 cut(s)	126, 411
BlsI	GCNGC	2 cut(s)	127, 412
BmcAI	AGTACT	2 cut(s)	580, 731
Bme1390I	CCNGG	1 cut(s)	898
Bme18I	GGWCC	1 cut(s)	771
BmgT120I	GGNCC	1 cut(s)	771
BmiI	GGNNCC	4 cut(s)	246, 328, 572, 772
BmrFI	CCNGG	1 cut(s)	898
BmsI	GCATC	5 cut(s)	34, 250, 517, 698, 772
BpiI	GAAGAC	1 cut(s)	408
BplI	GAGNNNNNCTC	2 cut(s)	577, 609
BpmI	CTGGAG	1 cut(s)	665
BpuMI	CCSGG	1 cut(s)	898
BsaJI	CCNNGG	2 cut(s)	393, 897
BsaXI	ACNNNNNCTCC	2 cut(s)	374, 404
Bse1I	ACTGG	2 cut(s)	427, 501
Bse3DI	GCAATG	1 cut(s)	757
BseDI	CCNNGG	2 cut(s)	393, 897
BseGI	GGATG	3 cut(s)	49, 80, 787
BseMI	GCAATG	1 cut(s)	757
BseMII	CTCAG	4 cut(s)	70, 589, 608, 804
BseNI	ACTGG	2 cut(s)	427, 501
BseXI	GCAGC	1 cut(s)	397
BseYI	CCCAGC	1 cut(s)	928
BshFI	GGCC	1 cut(s)	281
BsiHKAI	GWGCWC	1 cut(s)	351
BsiSI	CCGG	1 cut(s)	897
BslFI	GGGAC	4 cut(s)	94, 126, 784, 833
BsmFI	GGGAC	4 cut(s)	94, 126, 784, 833
BsnI	GGCC	1 cut(s)	281
Bsp1286I	GDGCHC	1 cut(s)	351
Bsp143I	GATC	8 cut(s)	22, 175, 237, 244, 253, 483, 570, 676
BspACI	CCGC	1 cut(s)	125
BspANI	GGCC	1 cut(s)	281
BspCNI	CTCAG	4 cut(s)	69, 588, 607, 805
BspHI	TCATGA	2 cut(s)	523, 553
BspLI	GGNNCC	4 cut(s)	246, 328, 572, 772
BspMAI	CTGCAG	1 cut(s)	253
BspPI	GGATC	5 cut(s)	239, 245, 252, 565, 578
BspQI	GCTCTTC	1 cut(s)	339
BsrDI	GCAATG	1 cut(s)	757
BsrI	ACTGG	2 cut(s)	427, 501
BssECI	CCNNGG	2 cut(s)	393, 897
BssMI	GATC	8 cut(s)	22, 175, 237, 244, 253, 483, 570, 676
BssSI	CACGAG	1 cut(s)	792
BssT1I	CCWWGG	1 cut(s)	393
Bst2BI	CACGAG	1 cut(s)	792
Bst4CI	ACNGT	3 cut(s)	16, 233, 476
Bst6I	CTCTTC	3 cut(s)	37, 339, 657
BstC8I	GCNNGC	2 cut(s)	67, 150
BstDEI	CTNAG	4 cut(s)	56, 575, 594, 813
BstF5I	GGATG	3 cut(s)	49, 80, 787
BstKTI	GATC	8 cut(s)	25, 178, 240, 247, 256, 486, 573, 679
BstMBI	GATC	8 cut(s)	22, 175, 237, 244, 253, 483, 570, 676
BstMWI	GCNNNNNNNGC	4 cut(s)	145, 269, 278, 497
BstNSI	RCATGY	3 cut(s)	69, 698, 878
BstSCI	CCNGG	1 cut(s)	896
BstSFI	CTRYAG	1 cut(s)	249
BstV1I	GCAGC	1 cut(s)	397
BstV2I	GAAGAC	1 cut(s)	408
BstX2I	RGATCY	4 cut(s)	175, 237, 244, 570
BstXI	CCANNNNNNTGG	1 cut(s)	422
BstYI	RGATCY	4 cut(s)	175, 237, 244, 570
BsuRI	GGCC	1 cut(s)	281
BtsCI	GGATG	3 cut(s)	49, 80, 787
BtsI	GCAGTG	1 cut(s)	689
BtsIMutI	CAGTG	3 cut(s)	12, 420, 689
Cac8I	GCNNGC	2 cut(s)	67, 150
CciI	TCATGA	2 cut(s)	523, 553
Cfr13I	GGNCC	1 cut(s)	771
Csp6I	GTAC	3 cut(s)	229, 579, 730
CviAII	CATG	7 cut(s)	66, 275, 524, 554, 601, 695, 875
CviQI	GTAC	3 cut(s)	229, 579, 730
DdeI	CTNAG	4 cut(s)	56, 575, 594, 813
DpnI	GATC	8 cut(s)	24, 177, 239, 246, 255, 485, 572, 678
DpnII	GATC	8 cut(s)	22, 175, 237, 244, 253, 483, 570, 676
EaeI	YGGCCR	1 cut(s)	279
Eam1104I	CTCTTC	3 cut(s)	37, 339, 657
EarI	CTCTTC	3 cut(s)	37, 339, 657
Ecl136II	GAGCTC	1 cut(s)	349
Eco130I	CCWWGG	1 cut(s)	393
Eco24I	GRGCYC	1 cut(s)	351
Eco32I	GATATC	1 cut(s)	430
Eco47I	GGWCC	1 cut(s)	771
Eco53kI	GAGCTC	1 cut(s)	349
Eco57I	CTGAAG	1 cut(s)	363
EcoICRI	GAGCTC	1 cut(s)	349
EcoRV	GATATC	1 cut(s)	430
EcoT14I	CCWWGG	1 cut(s)	393
EcoT38I	GRGCYC	1 cut(s)	351
ErhI	CCWWGG	1 cut(s)	393
FaeI	CATG	7 cut(s)	69, 278, 527, 557, 604, 698, 878
FalI	AAGNNNNNCTT	8 cut(s)	162, 194, 352, 384, 377, 409, 716, 748
FaqI	GGGAC	4 cut(s)	94, 126, 784, 833
FatI	CATG	7 cut(s)	65, 274, 523, 553, 600, 694, 874
Fnu4HI	GCNGC	2 cut(s)	126, 411
FokI	GGATG	3 cut(s)	56, 87, 794
FriOI	GRGCYC	1 cut(s)	351
Fsp4HI	GCNGC	2 cut(s)	126, 411
FspBI	CTAG	1 cut(s)	582
GluI	GCNGC	2 cut(s)	126, 411
GsaI	CCCAGC	1 cut(s)	932
GsuI	CTGGAG	1 cut(s)	665
HaeIII	GGCC	1 cut(s)	281
HapII	CCGG	1 cut(s)	897
Hin1II	CATG	7 cut(s)	69, 278, 527, 557, 604, 698, 878
HindIII	AAGCTT	2 cut(s)	366, 437
HinfI	GANTC	2 cut(s)	194, 592
HpaII	CCGG	1 cut(s)	897
HphI	GGTGA	1 cut(s)	437
Hpy166II	GTNNAC	2 cut(s)	229, 844
Hpy188I	TCNGA	4 cut(s)	59, 199, 434, 508
Hpy8I	GTNNAC	2 cut(s)	229, 844
HpyAV	CCTTC	5 cut(s)	85, 679, 733, 820, 928
HpyCH4III	ACNGT	3 cut(s)	16, 233, 476
HpyCH4V	TGCA	6 cut(s)	47, 69, 251, 356, 491, 694
HpyF10VI	GCNNNNNNNGC	4 cut(s)	145, 269, 278, 497
HpyF3I	CTNAG	4 cut(s)	56, 575, 594, 813
Hsp92II	CATG	7 cut(s)	69, 278, 527, 557, 604, 698, 878
Kzo9I	GATC	8 cut(s)	22, 175, 237, 244, 253, 483, 570, 676
LguI	GCTCTTC	1 cut(s)	339
LmnI	GCTCC	1 cut(s)	585
Lsp1109I	GCAGC	1 cut(s)	397
LweI	GCATC	5 cut(s)	34, 250, 517, 698, 772
MaeI	CTAG	1 cut(s)	582
MaeIII	GTNAC	2 cut(s)	299, 454
MalI	GATC	8 cut(s)	24, 177, 239, 246, 255, 485, 572, 678
MboI	GATC	8 cut(s)	22, 175, 237, 244, 253, 483, 570, 676
MboII	GAAGA	8 cut(s)	24, 170, 185, 356, 413, 512, 674, 737
MflI	RGATCY	4 cut(s)	175, 237, 244, 570
MhlI	GDGCHC	1 cut(s)	351
MlsI	TGGCCA	1 cut(s)	281
MluCI	AATT	3 cut(s)	321, 561, 636
MluNI	TGGCCA	1 cut(s)	281
MlyI	GAGTC	1 cut(s)	586
MmeI	TCCRAC	2 cut(s)	215, 639
Mox20I	TGGCCA	1 cut(s)	281
MroXI	GAANNNNTTC	1 cut(s)	177
MscI	TGGCCA	1 cut(s)	281
MseI	TTAA	1 cut(s)	612
MslI	CAYNNNNRTG	2 cut(s)	120, 794
Msp20I	TGGCCA	1 cut(s)	281
MspI	CCGG	1 cut(s)	897
MspR9I	CCNGG	1 cut(s)	898
MwoI	GCNNNNNNNGC	4 cut(s)	145, 269, 278, 497
NciI	CCSGG	1 cut(s)	898
NdeII	GATC	8 cut(s)	22, 175, 237, 244, 253, 483, 570, 676
NlaIII	CATG	7 cut(s)	69, 278, 527, 557, 604, 698, 878
NlaIV	GGNNCC	4 cut(s)	246, 328, 572, 772
NmuCI	GTSAC	1 cut(s)	454
NspI	RCATGY	3 cut(s)	69, 698, 878
OliI	CACNNNNGTG	1 cut(s)	794
PaeI	GCATGC	1 cut(s)	69
PagI	TCATGA	2 cut(s)	523, 553
PciSI	GCTCTTC	1 cut(s)	339
PdmI	GAANNNNTTC	1 cut(s)	177
PfeI	GAWTC	1 cut(s)	194
PkrI	GCNGC	2 cut(s)	127, 412
PleI	GAGTC	1 cut(s)	586
PpsI	GAGTC	1 cut(s)	586
Psp124BI	GAGCTC	1 cut(s)	351
PspFI	CCCAGC	1 cut(s)	928
PspN4I	GGNNCC	4 cut(s)	246, 328, 572, 772
PspPI	GGNCC	1 cut(s)	771
PstI	CTGCAG	1 cut(s)	253
PsuI	RGATCY	4 cut(s)	175, 237, 244, 570
RsaI	GTAC	3 cut(s)	230, 580, 731
RsaNI	GTAC	3 cut(s)	229, 579, 730
RseI	CAYNNNNRTG	2 cut(s)	120, 794
SacI	GAGCTC	1 cut(s)	351
SapI	GCTCTTC	1 cut(s)	339
SaqAI	TTAA	1 cut(s)	612
SatI	GCNGC	2 cut(s)	126, 411
Sau3AI	GATC	8 cut(s)	22, 175, 237, 244, 253, 483, 570, 676
Sau96I	GGNCC	1 cut(s)	771
ScaI	AGTACT	2 cut(s)	580, 731
SchI	GAGTC	1 cut(s)	586
ScrFI	CCNGG	1 cut(s)	898
SduI	GDGCHC	1 cut(s)	351
SfaNI	GCATC	5 cut(s)	34, 250, 517, 698, 772
SfcI	CTRYAG	1 cut(s)	249
SinI	GGWCC	1 cut(s)	771
SmiMI	CAYNNNNRTG	2 cut(s)	120, 794
SphI	GCATGC	1 cut(s)	69
Sse9I	AATT	3 cut(s)	321, 561, 636
SsiI	CCGC	1 cut(s)	125
SspMI	CTAG	1 cut(s)	582
SstI	GAGCTC	1 cut(s)	351
StyD4I	CCNGG	1 cut(s)	896
StyI	CCWWGG	1 cut(s)	393
TaaI	ACNGT	3 cut(s)	16, 233, 476
TaqI	TCGA	3 cut(s)	256, 318, 870
TaqII	GACCGA	1 cut(s)	788
TasI	AATT	3 cut(s)	321, 561, 636
TatI	WGTACW	2 cut(s)	578, 729
TauI	GCSGC	1 cut(s)	128
TfiI	GAWTC	1 cut(s)	194
Tru1I	TTAA	1 cut(s)	612
Tru9I	TTAA	1 cut(s)	612
TscAI	CASTG	3 cut(s)	19, 427, 696
TseFI	GTSAC	1 cut(s)	454
TseI	GCWGC	1 cut(s)	410
Tsp45I	GTSAC	1 cut(s)	454
TspDTI	ATGAA	2 cut(s)	512, 573
TspRI	CASTG	3 cut(s)	19, 427, 696
VpaK11BI	GGWCC	1 cut(s)	771
XapI	RAATTY	1 cut(s)	636
XceI	RCATGY	3 cut(s)	69, 698, 878
XmnI	GAANNNNTTC	1 cut(s)	177
XspI	CTAG	1 cut(s)	582
ZrmI	AGTACT	2 cut(s)	580, 731

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.