Rroxscaffold_160G00434000

Annexin-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000160
OG0001318
Physical Location & Seq
Reverse (-)
500110 .. 500682
573 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_160G00434000.1

Sequence Viewer

Length: 384 bp
ATGTTGCATCTTTTTGTTGCTTTGGTGACTGCTTACTGCTGTGACGGTAACGAGATTAATGTAAAGTTGGCAAATTCAGAAGCTAATATTCTTCAGGATGCTATCAAAGACGAGTGTTTTAATCATGAAGAAATTATTAGAATCCTGAGTACACGAAGCAAGACACAGGTCATGGCAACATTCAACAAATACAGAGATGACCATGGCAACTCTATCAGCAAGAATTTCTTGGAGGATGGGGCTAATGATTTCCAGAAGGCATTGCATACTGCCGTTCCATTCCTCAATGACCACAAGAAGTACTTTGAGAAGAAACAGTTCCCTCTCAAACTAATATATTACCCCTGGTATTCTGTGTACAGGTACTTCAGAAGGCAATCATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Annexin

Protein Analysis

127

Amino Acids

15.01

Weight (kDa)

8.4

Isoelectric Point (pI)

46.46

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Annexin PF00191 27 - 89 1.4e-10 Annexin
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 2 cut(s) 73, 223
AcuI CTGAAG 2 cut(s) 77, 352
AfaI GTAC 4 cut(s) 151, 302, 359, 365
AgsI TTSAA 1 cut(s) 184
AjnI CCWGG 1 cut(s) 344
AluBI AGCT 1 cut(s) 83
AluI AGCT 1 cut(s) 83
ApoI RAATTY 2 cut(s) 73, 223
AseI ATTAAT 1 cut(s) 57
Asp700I GAANNNNTTC 1 cut(s) 317
AsuHPI GGTGA 1 cut(s) 37
BarI GAAGNNNNNNTAC 2 cut(s) 350, 382
BccI CCATC 1 cut(s) 230
BceAI ACGGC 1 cut(s) 257
BciT130I CCWGG 1 cut(s) 346
BmcAI AGTACT 1 cut(s) 302
Bme1390I CCNGG 1 cut(s) 346
BmrFI CCNGG 1 cut(s) 346
BmsI GCATC 2 cut(s) 16, 88
BoxI GACNNNNGTC 1 cut(s) 167
BsaJI CCNNGG 2 cut(s) 202, 344
Bse3DI GCAATG 1 cut(s) 260
BseBI CCWGG 1 cut(s) 346
BseDI CCNNGG 2 cut(s) 202, 344
BseGI GGATG 2 cut(s) 103, 241
BseMI GCAATG 1 cut(s) 260
BseMII CTCAG 1 cut(s) 137
Bsp1407I TGTACA 1 cut(s) 357
Bsp19I CCATGG 1 cut(s) 202
BspCNI CTCAG 1 cut(s) 138
BspHI TCATGA 1 cut(s) 124
BsrDI GCAATG 1 cut(s) 260
BsrGI TGTACA 1 cut(s) 357
BssECI CCNNGG 2 cut(s) 202, 344
BssT1I CCWWGG 1 cut(s) 202
Bst2UI CCWGG 1 cut(s) 346
Bst4CI ACNGT 2 cut(s) 47, 318
BstAUI TGTACA 1 cut(s) 357
BstDEI CTNAG 1 cut(s) 146
BstDSI CCRYGG 1 cut(s) 202
BstF5I GGATG 2 cut(s) 103, 241
BstNI CCWGG 1 cut(s) 346
BstPAI GACNNNNGTC 1 cut(s) 167
BstSCI CCNGG 1 cut(s) 344
BtgI CCRYGG 1 cut(s) 202
BtsCI GGATG 2 cut(s) 103, 241
CciI TCATGA 1 cut(s) 124
Csp6I GTAC 4 cut(s) 150, 301, 358, 364
CviAII CATG 3 cut(s) 125, 172, 203
CviJI RGCY 2 cut(s) 83, 242
CviKI_1 RGCY 2 cut(s) 83, 242
CviQI GTAC 4 cut(s) 150, 301, 358, 364
DdeI CTNAG 1 cut(s) 146
Eco130I CCWWGG 1 cut(s) 202
Eco57I CTGAAG 2 cut(s) 77, 352
EcoRII CCWGG 1 cut(s) 344
EcoT14I CCWWGG 1 cut(s) 202
ErhI CCWWGG 1 cut(s) 202
FaeI CATG 3 cut(s) 128, 175, 206
FaiI YATR 6 cut(s) 126, 173, 204, 267, 337, 382
FalI AAGNNNNNCTT 4 cut(s) 212, 244, 287, 319
FatI CATG 3 cut(s) 124, 171, 202
FokI GGATG 2 cut(s) 110, 248
Hin1II CATG 3 cut(s) 128, 175, 206
HinfI GANTC 1 cut(s) 141
HphI GGTGA 1 cut(s) 37
Hpy166II GTNNAC 2 cut(s) 152, 358
Hpy188I TCNGA 2 cut(s) 79, 371
Hpy188III TCNNGA 4 cut(s) 95, 125, 145, 253
Hpy8I GTNNAC 2 cut(s) 152, 358
HpyAV CCTTC 2 cut(s) 250, 366
HpyCH4III ACNGT 2 cut(s) 47, 318
HpyCH4V TGCA 2 cut(s) 7, 265
HpyF3I CTNAG 1 cut(s) 146
Hsp92II CATG 3 cut(s) 128, 175, 206
LpnPI CCDG 7 cut(s) 80, 152, 158, 266, 331, 346, 358
LweI GCATC 2 cut(s) 16, 88
MaeIII GTNAC 3 cut(s) 25, 41, 47
MboII GAAGA 3 cut(s) 83, 140, 322
MluCI AATT 3 cut(s) 73, 132, 223
MnlI CCTC 3 cut(s) 226, 293, 333
MroXI GAANNNNTTC 1 cut(s) 317
MseI TTAA 2 cut(s) 57, 120
MspR9I CCNGG 1 cut(s) 346
MvaI CCWGG 1 cut(s) 346
NcoI CCATGG 1 cut(s) 202
NlaIII CATG 3 cut(s) 128, 175, 206
NmuCI GTSAC 2 cut(s) 25, 41
PagI TCATGA 1 cut(s) 124
PdmI GAANNNNTTC 1 cut(s) 317
PfeI GAWTC 1 cut(s) 141
PshAI GACNNNNGTC 1 cut(s) 167
PshBI ATTAAT 1 cut(s) 57
Psp6I CCWGG 1 cut(s) 344
PspGI CCWGG 1 cut(s) 344
RsaI GTAC 4 cut(s) 151, 302, 359, 365
RsaNI GTAC 4 cut(s) 150, 301, 358, 364
SaqAI TTAA 2 cut(s) 57, 120
ScaI AGTACT 1 cut(s) 302
ScrFI CCNGG 1 cut(s) 346
SetI ASST 3 cut(s) 85, 171, 365
SfaNI GCATC 2 cut(s) 16, 88
Sse9I AATT 3 cut(s) 73, 132, 223
SspI AATATT 1 cut(s) 88
StyD4I CCNGG 1 cut(s) 344
StyI CCWWGG 1 cut(s) 202
TaaI ACNGT 2 cut(s) 47, 318
TasI AATT 3 cut(s) 73, 132, 223
TatI WGTACW 3 cut(s) 149, 300, 357
TfiI GAWTC 1 cut(s) 141
Tru1I TTAA 2 cut(s) 57, 120
Tru9I TTAA 2 cut(s) 57, 120
TseFI GTSAC 2 cut(s) 25, 41
Tsp45I GTSAC 2 cut(s) 25, 41
TspDTI ATGAA 1 cut(s) 141
VspI ATTAAT 1 cut(s) 57
XapI RAATTY 2 cut(s) 73, 223
XmnI GAANNNNTTC 1 cut(s) 317
ZrmI AGTACT 1 cut(s) 302
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.