Rmu_sc0000196.1_g000001

Annexin-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000196.1
OG0001318
Physical Location & Seq
Reverse (-)
218 .. 1103
886 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0000196.1_g000001.1.cds

Sequence Viewer

Length: 495 bp
atgttttgtccttttactacagaagatagagggactggtggaaatgagaatattatccaagagaaactctttcgtcttacaagagcggtgtaccggtggatattggatccagcagatcgtgatgcagttttggctaatgtggccatcaagaaatccaacactgactacaatgtcatcatagaaatgtcctgcgttcactctcctgaagagctcctagctgtaagaagagcttaccagcttcgctacaagcactcgttggaagaagatctagctgcacataccaccggtgatatgcgcaatgtttttggcttatggtggatgttgcagcttttggttgctttggtgactgcttaccgttatgacggtaacgagatcaatgcaaagttggcaaattcagaagctgatattctccatgatgctatcaaagacaaggctttcaacaaatacaaggagcaagacacagctcatggctacattcaacaaatacagagatga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Annexin

Protein Analysis

164

Amino Acids

18.94

Weight (kDa)

5.95

Isoelectric Point (pI)

44.94

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 170
Acc16I TGCGCA 1 cut(s) 296
AccBSI CCGCTC 1 cut(s) 86
AciI CCGC 1 cut(s) 86
AclWI GGATC 2 cut(s) 101, 114
AcoI YGGCCR 1 cut(s) 141
AcsI RAATTY 1 cut(s) 391
AcuI CTGAAG 1 cut(s) 225
AfaI GTAC 1 cut(s) 92
AgeI ACCGGT 2 cut(s) 93, 284
AgsI TTSAA 2 cut(s) 439, 479
AluBI AGCT 8 cut(s) 211, 218, 230, 238, 272, 328, 401, 464
AluI AGCT 8 cut(s) 211, 218, 230, 238, 272, 328, 401, 464
Alw21I GWGCWC 1 cut(s) 213
AlwI GGATC 2 cut(s) 101, 114
AlwNI CAGNNNCTG 1 cut(s) 401
AoxI GGCC 1 cut(s) 141
ApeKI GCWGC 2 cut(s) 272, 325
ApoI RAATTY 1 cut(s) 391
AsiGI ACCGGT 2 cut(s) 93, 284
AspLEI GCGC 1 cut(s) 297
AsuHPI GGTGA 2 cut(s) 299, 355
BalI TGGCCA 1 cut(s) 143
BamHI GGATCC 1 cut(s) 106
BanII GRGCYC 1 cut(s) 213
Bbv12I GWGCWC 1 cut(s) 213
BbvI GCAGC 2 cut(s) 259, 337
BccI CCATC 1 cut(s) 152
BcgI CGANNNNNNTGC 2 cut(s) 359, 393
BfaI CTAG 2 cut(s) 215, 269
BfmI CTRYAG 1 cut(s) 18
BglII AGATCT 1 cut(s) 265
BisI GCNGC 2 cut(s) 273, 326
BlsI GCNGC 2 cut(s) 274, 327
BmiI GGNNCC 1 cut(s) 108
BmsI GCATC 2 cut(s) 112, 406
BsaWI WCCGGW 2 cut(s) 93, 284
Bse118I RCCGGY 2 cut(s) 93, 284
Bse1I ACTGG 1 cut(s) 40
Bse3DI GCAATG 1 cut(s) 304
BseGI GGATG 1 cut(s) 324
BseMI GCAATG 1 cut(s) 304
BseNI ACTGG 1 cut(s) 40
BseXI GCAGC 2 cut(s) 259, 337
BsgI GTGCAG 1 cut(s) 258
BshFI GGCC 1 cut(s) 143
BshTI ACCGGT 2 cut(s) 93, 284
BsiHKAI GWGCWC 1 cut(s) 213
BsiSI CCGG 2 cut(s) 94, 285
BslFI GGGAC 1 cut(s) 46
BsmFI GGGAC 1 cut(s) 46
BsnI GGCC 1 cut(s) 143
Bsp1286I GDGCHC 1 cut(s) 213
Bsp143I GATC 4 cut(s) 106, 115, 265, 372
BspACI CCGC 1 cut(s) 86
BspANI GGCC 1 cut(s) 143
BspLI GGNNCC 1 cut(s) 108
BspPI GGATC 2 cut(s) 101, 114
BspQI GCTCTTC 2 cut(s) 201, 220
BsrBI CCGCTC 1 cut(s) 86
BsrDI GCAATG 1 cut(s) 304
BsrFI RCCGGY 2 cut(s) 93, 284
BsrI ACTGG 1 cut(s) 40
BssAI RCCGGY 2 cut(s) 93, 284
BssMI GATC 4 cut(s) 106, 115, 265, 372
Bst4CI ACNGT 2 cut(s) 356, 365
Bst6I CTCTTC 2 cut(s) 201, 220
BstF5I GGATG 1 cut(s) 324
BstHHI GCGC 1 cut(s) 297
BstKTI GATC 4 cut(s) 109, 118, 268, 375
BstMBI GATC 4 cut(s) 106, 115, 265, 372
BstMWI GCNNNNNNNGC 3 cut(s) 131, 140, 386
BstSFI CTRYAG 1 cut(s) 18
BstV1I GCAGC 2 cut(s) 259, 337
BstX2I RGATCY 2 cut(s) 106, 265
BstYI RGATCY 2 cut(s) 106, 265
BsuRI GGCC 1 cut(s) 143
BtsCI GGATG 1 cut(s) 324
BtsIMutI CAGTG 1 cut(s) 159
CaiI CAGNNNCTG 1 cut(s) 401
CfoI GCGC 1 cut(s) 297
Cfr10I RCCGGY 2 cut(s) 93, 284
Csp6I GTAC 1 cut(s) 91
CspAI ACCGGT 2 cut(s) 93, 284
CviAII CATG 2 cut(s) 413, 467
CviQI GTAC 1 cut(s) 91
DpnI GATC 4 cut(s) 108, 117, 267, 374
DpnII GATC 4 cut(s) 106, 115, 265, 372
DrdI GACNNNNNNGTC 1 cut(s) 170
DseDI GACNNNNNNGTC 1 cut(s) 170
EaeI YGGCCR 1 cut(s) 141
Eam1104I CTCTTC 2 cut(s) 201, 220
EarI CTCTTC 2 cut(s) 201, 220
Ecl136II GAGCTC 1 cut(s) 211
Eco24I GRGCYC 1 cut(s) 213
Eco53kI GAGCTC 1 cut(s) 211
Eco57I CTGAAG 1 cut(s) 225
EcoICRI GAGCTC 1 cut(s) 211
EcoT38I GRGCYC 1 cut(s) 213
FaeI CATG 2 cut(s) 416, 470
FaiI YATR 7 cut(s) 179, 279, 293, 313, 360, 414, 468
FalI AAGNNNNNCTT 2 cut(s) 214, 246
FaqI GGGAC 1 cut(s) 46
FatI CATG 2 cut(s) 412, 466
Fnu4HI GCNGC 2 cut(s) 273, 326
FokI GGATG 1 cut(s) 331
FriOI GRGCYC 1 cut(s) 213
Fsp4HI GCNGC 2 cut(s) 273, 326
FspBI CTAG 2 cut(s) 215, 269
FspI TGCGCA 1 cut(s) 296
GlaI GCGC 1 cut(s) 296
GluI GCNGC 2 cut(s) 273, 326
HaeIII GGCC 1 cut(s) 143
HapII CCGG 2 cut(s) 94, 285
HhaI GCGC 1 cut(s) 297
Hin1II CATG 2 cut(s) 416, 470
Hin6I GCGC 1 cut(s) 295
HinP1I GCGC 1 cut(s) 295
HpaII CCGG 2 cut(s) 94, 285
HphI GGTGA 2 cut(s) 299, 355
Hpy166II GTNNAC 2 cut(s) 91, 196
Hpy188I TCNGA 1 cut(s) 397
Hpy188III TCNNGA 3 cut(s) 119, 148, 203
Hpy8I GTNNAC 2 cut(s) 91, 196
HpyCH4III ACNGT 2 cut(s) 356, 365
HpyCH4V TGCA 4 cut(s) 125, 275, 325, 380
HpyF10VI GCNNNNNNNGC 3 cut(s) 131, 140, 386
Hsp92II CATG 2 cut(s) 416, 470
HspAI GCGC 1 cut(s) 295
Kzo9I GATC 4 cut(s) 106, 115, 265, 372
LguI GCTCTTC 2 cut(s) 201, 220
LmnI GCTCC 2 cut(s) 216, 451
LpnPI CCDG 7 cut(s) 21, 107, 123, 202, 216, 248, 298
Lsp1109I GCAGC 2 cut(s) 259, 337
LweI GCATC 2 cut(s) 112, 406
MaeI CTAG 2 cut(s) 215, 269
MaeIII GTNAC 2 cut(s) 343, 365
MalI GATC 4 cut(s) 108, 117, 267, 374
MbiI CCGCTC 1 cut(s) 86
MboI GATC 4 cut(s) 106, 115, 265, 372
MboII GAAGA 5 cut(s) 35, 218, 237, 272, 275
MflI RGATCY 2 cut(s) 106, 265
MhlI GDGCHC 1 cut(s) 213
MlsI TGGCCA 1 cut(s) 143
MluCI AATT 1 cut(s) 391
MluNI TGGCCA 1 cut(s) 143
MmeI TCCRAC 2 cut(s) 180, 237
MnlI CCTC 1 cut(s) 23
Mox20I TGGCCA 1 cut(s) 143
MscI TGGCCA 1 cut(s) 143
MslI CAYNNNNRTG 1 cut(s) 182
Msp20I TGGCCA 1 cut(s) 143
MspI CCGG 2 cut(s) 94, 285
MwoI GCNNNNNNNGC 3 cut(s) 131, 140, 386
NdeII GATC 4 cut(s) 106, 115, 265, 372
NlaIII CATG 2 cut(s) 416, 470
NlaIV GGNNCC 1 cut(s) 108
NmuCI GTSAC 1 cut(s) 343
NsbI TGCGCA 1 cut(s) 296
PciSI GCTCTTC 2 cut(s) 201, 220
PinAI ACCGGT 2 cut(s) 93, 284
PkrI GCNGC 2 cut(s) 274, 327
Psp124BI GAGCTC 1 cut(s) 213
PspN4I GGNNCC 1 cut(s) 108
PstNI CAGNNNCTG 1 cut(s) 401
PsuI RGATCY 2 cut(s) 106, 265
RsaI GTAC 1 cut(s) 92
RsaNI GTAC 1 cut(s) 91
RseI CAYNNNNRTG 1 cut(s) 182
SacI GAGCTC 1 cut(s) 213
SapI GCTCTTC 2 cut(s) 201, 220
SatI GCNGC 2 cut(s) 273, 326
Sau3AI GATC 4 cut(s) 106, 115, 265, 372
SduI GDGCHC 1 cut(s) 213
SetI ASST 8 cut(s) 213, 220, 232, 240, 274, 330, 403, 466
SfaNI GCATC 2 cut(s) 112, 406
SfcI CTRYAG 1 cut(s) 18
SgrAI CRCCGGYG 1 cut(s) 284
SmiMI CAYNNNNRTG 1 cut(s) 182
Sse9I AATT 1 cut(s) 391
SsiI CCGC 1 cut(s) 86
SspI AATATT 1 cut(s) 52
SspMI CTAG 2 cut(s) 215, 269
SstI GAGCTC 1 cut(s) 213
TaaI ACNGT 2 cut(s) 356, 365
TasI AATT 1 cut(s) 391
TscAI CASTG 1 cut(s) 166
TseFI GTSAC 1 cut(s) 343
TseI GCWGC 2 cut(s) 272, 325
Tsp45I GTSAC 1 cut(s) 343
TspRI CASTG 1 cut(s) 166
XapI RAATTY 1 cut(s) 391
XspI CTAG 2 cut(s) 215, 269
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.