Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0003410.1

Orthogroup ID

OG0001318

Physical Location & Seq

Genomic Coordinates Reverse (-)

230220 .. 232095

Gene Structure 1876 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0003410.1_g000044.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 795 bp

atggctacccttgtttctcctccaaatttctcagccaatgaagatgcagaagctcttcgaatatctgttaaaggttgggggactaatgagaaggctatcatctccatcttgggtcatagaactgcaggtcaaagaaaagagatcagggcagcttatgaacaactttatcaagaagatctaatcaagcgccttgaagcggtgtaccggtggatattggatccagcagatcgtgatgcagttttggctaatgtggccatcaagaaatccaacactgactacaatgtcatcatagaaatgtcctgcgttcactctcctgaagagctcctagctgtaagaagagcttaccagcttcgctacaagcactcgttggaagaagatctagctgcacataccaccggtgatatgcgcaagcttttggttgctttggtgactgcttaccgttatgacggtaacgagatcaatgcaaagttggcaaattcagaagctgatattctccatgatgctatcaaagacaaggctttcaatcatgaagaaattatcaggatcctgacccttcgatgcctcaatgaccccaagaagtactttgagaaggtacttcgcaatgcaatcaaaaggcttgggacctatgaggatgctctcactcgtgtaattgttacaagggcagagagggacttgagggacatcaaggaggtttactacaagaagaacagtgttcctcttgaacaggctgtggccaaagacacttcaggggactataaggccttcctccttactctgttgggaaaggaagattga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Annexin

Protein Analysis

264

Amino Acids

30.12

Weight (kDa)

7.03

Isoelectric Point (pI)

36.61

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001318)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G12380
fragaria_vesca	FvH4_7g02680 FvH4_7g02680
malus_domestica	MD02G1291000.v1.1 MD07G1035500.v1.1 MD07G1036200.v1.1 MD07G1036300.v1.1
prunus_persica	Prupe.2G031900_v2.0.a1 Prupe.2G031900_v2.0.a1
pyrus_communis	pycom02g24600 pycom07g02490 pycom07g02500
rosa_chinensis	RchiOBHm_Chr1g0321371 RchiOBHm_Chr1g0321531 RchiOBHm_Chr1g0321551 RchiOBHm_Chr1g0321701
rosa_laevigata	RLG00000030411 RLG00000030414 RLG00000030418
rosa_multiflora	Rmu_sc0000087.1_g000010 Rmu_sc0000087.1_g000013 Rmu_sc0000196.1_g000001 Rmu_sc0000724.1_g000024 Rmu_sc0000724.1_g000032 Rmu_sc0000960.1_g000004 Rmu_sc0003410.1_g000041 Rmu_sc0003410.1_g000044 Rmu_sc0025973.1_g000001
rosa_roxburghii	Rroxscaffold_160G00434000 Rroxscaffold_4G00327530 Rroxscaffold_4G00327560 Rroxscaffold_4G00327790
rosa_rugosa	Rorug01G0033300 Rorug01G0033500 Rorug01G0033600 Rorug01G0033700
rosa_samantha	Rh1AG044600 Rh1AG045100 Rh1AG045200 Rh1AG045600 Rh1AG046300 Rh1BG042300 Rh1BG043600 Rh1BG044800 Rh1CG047200 Rh1DG052300 Rh1DG052400 Rh1DG052800 Rh1DG054800
rosa_wichuraiana	Rw1G003980 Rw1G004000 Rw1G004080 Rw1G004120 Rw1G004140

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	281
Acc16I	TGCGCA	1 cut(s)	407
Acc36I	ACCTGC	1 cut(s)	116
AciI	CCGC	1 cut(s)	197
AclWI	GGATC	4 cut(s)	212, 225, 538, 551
AcoI	YGGCCR	2 cut(s)	252, 732
AcsI	RAATTY	2 cut(s)	25, 475
AcuI	CTGAAG	2 cut(s)	336, 729
AfaI	GTAC	3 cut(s)	203, 581, 594
AfiI	CCNNNNNNNGG	1 cut(s)	196
AgeI	ACCGGT	2 cut(s)	204, 395
AgsI	TTSAA	3 cut(s)	194, 523, 722
AluBI	AGCT	9 cut(s)	53, 152, 322, 329, 341, 349, 383, 412, 485
AluI	AGCT	9 cut(s)	53, 152, 322, 329, 341, 349, 383, 412, 485
Alw21I	GWGCWC	1 cut(s)	324
AlwI	GGATC	4 cut(s)	212, 225, 538, 551
AlwNI	CAGNNNCTG	1 cut(s)	485
AoxI	GGCC	3 cut(s)	252, 732, 759
ApeKI	GCWGC	2 cut(s)	149, 383
ApoI	RAATTY	2 cut(s)	25, 475
AsiGI	ACCGGT	2 cut(s)	204, 395
Asp700I	GAANNNNTTC	1 cut(s)	54
AspLEI	GCGC	2 cut(s)	189, 408
AspS9I	GGNCC	1 cut(s)	621
AsuHPI	GGTGA	2 cut(s)	410, 439
AsuII	TTCGAA	1 cut(s)	58
AvaII	GGWCC	1 cut(s)	621
BalI	TGGCCA	2 cut(s)	254, 734
BamHI	GGATCC	2 cut(s)	217, 543
BanII	GRGCYC	1 cut(s)	324
BauI	CACGAG	1 cut(s)	642
Bbv12I	GWGCWC	1 cut(s)	324
BbvI	GCAGC	2 cut(s)	161, 370
BccI	CCATC	2 cut(s)	113, 263
BcgI	CGANNNNNNTGC	2 cut(s)	443, 477
BfaI	CTAG	2 cut(s)	326, 380
BfmI	CTRYAG	1 cut(s)	123
BfoI	RGCGCY	1 cut(s)	190
BfuAI	ACCTGC	1 cut(s)	116
BglII	AGATCT	2 cut(s)	175, 376
BisI	GCNGC	2 cut(s)	150, 384
BlsI	GCNGC	2 cut(s)	151, 385
BmcAI	AGTACT	1 cut(s)	581
Bme18I	GGWCC	1 cut(s)	621
BmgT120I	GGNCC	1 cut(s)	621
BmiI	GGNNCC	3 cut(s)	219, 545, 622
BmsI	GCATC	5 cut(s)	34, 223, 490, 548, 622
Bpu14I	TTCGAA	1 cut(s)	58
BpuEI	CTTGAG	1 cut(s)	694
BsaWI	WCCGGW	2 cut(s)	204, 395
Bsc4I	CCNNNNNNNGG	1 cut(s)	196
Bse118I	RCCGGY	2 cut(s)	204, 395
Bse3DI	GCAATG	1 cut(s)	607
BseGI	GGATG	1 cut(s)	637
BseLI	CCNNNNNNNGG	1 cut(s)	196
BseMI	GCAATG	1 cut(s)	607
BseMII	CTCAG	1 cut(s)	45
BseRI	GAGGAG	1 cut(s)	9
BseXI	GCAGC	2 cut(s)	161, 370
BsgI	GTGCAG	1 cut(s)	369
BshFI	GGCC	3 cut(s)	254, 734, 761
BshTI	ACCGGT	2 cut(s)	204, 395
BsiHKAI	GWGCWC	1 cut(s)	324
BsiSI	CCGG	2 cut(s)	205, 396
BslFI	GGGAC	5 cut(s)	94, 634, 683, 692, 764
BslI	CCNNNNNNNGG	1 cut(s)	196
BsmFI	GGGAC	5 cut(s)	94, 634, 683, 692, 764
BsnI	GGCC	3 cut(s)	254, 734, 761
Bsp119I	TTCGAA	1 cut(s)	58
Bsp1286I	GDGCHC	1 cut(s)	324
Bsp143I	GATC	7 cut(s)	141, 175, 217, 226, 376, 456, 543
BspACI	CCGC	1 cut(s)	197
BspANI	GGCC	3 cut(s)	254, 734, 761
BspCNI	CTCAG	1 cut(s)	44
BspHI	TCATGA	1 cut(s)	526
BspLI	GGNNCC	3 cut(s)	219, 545, 622
BspMAI	CTGCAG	1 cut(s)	127
BspMI	ACCTGC	1 cut(s)	116
BspPI	GGATC	4 cut(s)	212, 225, 538, 551
BspQI	GCTCTTC	3 cut(s)	60, 312, 331
BspT104I	TTCGAA	1 cut(s)	58
BsrDI	GCAATG	1 cut(s)	607
BsrFI	RCCGGY	2 cut(s)	204, 395
BssAI	RCCGGY	2 cut(s)	204, 395
BssMI	GATC	7 cut(s)	141, 175, 217, 226, 376, 456, 543
BssSI	CACGAG	1 cut(s)	642
Bst2BI	CACGAG	1 cut(s)	642
Bst4CI	ACNGT	3 cut(s)	440, 449, 710
Bst6I	CTCTTC	3 cut(s)	60, 312, 331
BstBI	TTCGAA	1 cut(s)	58
BstC8I	GCNNGC	1 cut(s)	410
BstDEI	CTNAG	1 cut(s)	31
BstF5I	GGATG	1 cut(s)	637
BstH2I	RGCGCY	1 cut(s)	190
BstHHI	GCGC	2 cut(s)	189, 408
BstKTI	GATC	7 cut(s)	144, 178, 220, 229, 379, 459, 546
BstMBI	GATC	7 cut(s)	141, 175, 217, 226, 376, 456, 543
BstMWI	GCNNNNNNNGC	3 cut(s)	242, 251, 470
BstSFI	CTRYAG	1 cut(s)	123
BstV1I	GCAGC	2 cut(s)	161, 370
BstX2I	RGATCY	4 cut(s)	175, 217, 376, 543
BstYI	RGATCY	4 cut(s)	175, 217, 376, 543
BsuRI	GGCC	3 cut(s)	254, 734, 761
BtsCI	GGATG	1 cut(s)	637
BtsIMutI	CAGTG	2 cut(s)	270, 715
BveI	ACCTGC	1 cut(s)	116
Cac8I	GCNNGC	1 cut(s)	410
CaiI	CAGNNNCTG	1 cut(s)	485
CciI	TCATGA	1 cut(s)	526
CfoI	GCGC	2 cut(s)	189, 408
Cfr10I	RCCGGY	2 cut(s)	204, 395
Cfr13I	GGNCC	1 cut(s)	621
Csp6I	GTAC	3 cut(s)	202, 580, 593
CspAI	ACCGGT	2 cut(s)	204, 395
CviAII	CATG	2 cut(s)	497, 527
CviQI	GTAC	3 cut(s)	202, 580, 593
DdeI	CTNAG	1 cut(s)	31
DpnI	GATC	7 cut(s)	143, 177, 219, 228, 378, 458, 545
DpnII	GATC	7 cut(s)	141, 175, 217, 226, 376, 456, 543
DrdI	GACNNNNNNGTC	1 cut(s)	281
DseDI	GACNNNNNNGTC	1 cut(s)	281
EaeI	YGGCCR	2 cut(s)	252, 732
Eam1104I	CTCTTC	3 cut(s)	60, 312, 331
EarI	CTCTTC	3 cut(s)	60, 312, 331
Ecl136II	GAGCTC	1 cut(s)	322
Eco147I	AGGCCT	1 cut(s)	761
Eco24I	GRGCYC	1 cut(s)	324
Eco47I	GGWCC	1 cut(s)	621
Eco53kI	GAGCTC	1 cut(s)	322
Eco57I	CTGAAG	2 cut(s)	336, 729
EcoICRI	GAGCTC	1 cut(s)	322
EcoO109I	RGGNCCY	1 cut(s)	621
EcoT38I	GRGCYC	1 cut(s)	324
FaeI	CATG	2 cut(s)	500, 530
FalI	AAGNNNNNCTT	4 cut(s)	325, 357, 566, 598
FaqI	GGGAC	5 cut(s)	94, 634, 683, 692, 764
FatI	CATG	2 cut(s)	496, 526
Fnu4HI	GCNGC	2 cut(s)	150, 384
FokI	GGATG	1 cut(s)	644
FriOI	GRGCYC	1 cut(s)	324
Fsp4HI	GCNGC	2 cut(s)	150, 384
FspBI	CTAG	2 cut(s)	326, 380
FspI	TGCGCA	1 cut(s)	407
GlaI	GCGC	2 cut(s)	188, 407
GluI	GCNGC	2 cut(s)	150, 384
HaeII	RGCGCY	1 cut(s)	190
HaeIII	GGCC	3 cut(s)	254, 734, 761
HapII	CCGG	2 cut(s)	205, 396
HhaI	GCGC	2 cut(s)	189, 408
Hin1II	CATG	2 cut(s)	500, 530
Hin6I	GCGC	2 cut(s)	187, 406
HinP1I	GCGC	2 cut(s)	187, 406
HindIII	AAGCTT	1 cut(s)	410
HpaII	CCGG	2 cut(s)	205, 396
HphI	GGTGA	2 cut(s)	410, 439
Hpy166II	GTNNAC	3 cut(s)	202, 307, 694
Hpy188I	TCNGA	1 cut(s)	481
Hpy188III	TCNNGA	8 cut(s)	170, 230, 259, 314, 527, 541, 547, 719
Hpy8I	GTNNAC	3 cut(s)	202, 307, 694
HpyAV	CCTTC	4 cut(s)	85, 563, 583, 772
HpyCH4III	ACNGT	3 cut(s)	440, 449, 710
HpyCH4V	TGCA	6 cut(s)	47, 125, 236, 386, 464, 605
HpyF10VI	GCNNNNNNNGC	3 cut(s)	242, 251, 470
HpyF3I	CTNAG	1 cut(s)	31
Hsp92II	CATG	2 cut(s)	500, 530
HspAI	GCGC	2 cut(s)	187, 406
Kzo9I	GATC	7 cut(s)	141, 175, 217, 226, 376, 456, 543
LguI	GCTCTTC	3 cut(s)	60, 312, 331
LmnI	GCTCC	1 cut(s)	327
Lsp1109I	GCAGC	2 cut(s)	161, 370
LweI	GCATC	5 cut(s)	34, 223, 490, 548, 622
MaeI	CTAG	2 cut(s)	326, 380
MaeIII	GTNAC	3 cut(s)	427, 449, 652
MalI	GATC	7 cut(s)	143, 177, 219, 228, 378, 458, 545
MboI	GATC	7 cut(s)	141, 175, 217, 226, 376, 456, 543
MboII	GAAGA	9 cut(s)	47, 53, 185, 329, 348, 383, 386, 542, 715
MflI	RGATCY	4 cut(s)	175, 217, 376, 543
MhlI	GDGCHC	1 cut(s)	324
MlsI	TGGCCA	2 cut(s)	254, 734
MluCI	AATT	4 cut(s)	25, 475, 534, 648
MluNI	TGGCCA	2 cut(s)	254, 734
MmeI	TCCRAC	2 cut(s)	291, 348
MnlI	CCTC	8 cut(s)	30, 572, 622, 660, 669, 682, 726, 776
Mox20I	TGGCCA	2 cut(s)	254, 734
MroXI	GAANNNNTTC	1 cut(s)	54
MscI	TGGCCA	2 cut(s)	254, 734
MseI	TTAA	1 cut(s)	69
MslI	CAYNNNNRTG	1 cut(s)	293
Msp20I	TGGCCA	2 cut(s)	254, 734
MspI	CCGG	2 cut(s)	205, 396
MwoI	GCNNNNNNNGC	3 cut(s)	242, 251, 470
NdeII	GATC	7 cut(s)	141, 175, 217, 226, 376, 456, 543
NlaIII	CATG	2 cut(s)	500, 530
NlaIV	GGNNCC	3 cut(s)	219, 545, 622
NmuCI	GTSAC	1 cut(s)	427
NsbI	TGCGCA	1 cut(s)	407
NspV	TTCGAA	1 cut(s)	58
PagI	TCATGA	1 cut(s)	526
PceI	AGGCCT	1 cut(s)	761
PciSI	GCTCTTC	3 cut(s)	60, 312, 331
PdmI	GAANNNNTTC	1 cut(s)	54
PinAI	ACCGGT	2 cut(s)	204, 395
PkrI	GCNGC	2 cut(s)	151, 385
PpuMI	RGGWCCY	1 cut(s)	621
Psp124BI	GAGCTC	1 cut(s)	324
Psp5II	RGGWCCY	1 cut(s)	621
PspN4I	GGNNCC	3 cut(s)	219, 545, 622
PspPI	GGNCC	1 cut(s)	621
PspPPI	RGGWCCY	1 cut(s)	621
PstI	CTGCAG	1 cut(s)	127
PstNI	CAGNNNCTG	1 cut(s)	485
PsuI	RGATCY	4 cut(s)	175, 217, 376, 543
RsaI	GTAC	3 cut(s)	203, 581, 594
RsaNI	GTAC	3 cut(s)	202, 580, 593
RseI	CAYNNNNRTG	1 cut(s)	293
SacI	GAGCTC	1 cut(s)	324
SapI	GCTCTTC	3 cut(s)	60, 312, 331
SaqAI	TTAA	1 cut(s)	69
SatI	GCNGC	2 cut(s)	150, 384
Sau3AI	GATC	7 cut(s)	141, 175, 217, 226, 376, 456, 543
Sau96I	GGNCC	1 cut(s)	621
ScaI	AGTACT	1 cut(s)	581
SduI	GDGCHC	1 cut(s)	324
SfaNI	GCATC	5 cut(s)	34, 223, 490, 548, 622
SfcI	CTRYAG	1 cut(s)	123
SfuI	TTCGAA	1 cut(s)	58
SgrAI	CRCCGGYG	1 cut(s)	395
SinI	GGWCC	1 cut(s)	621
SmiMI	CAYNNNNRTG	1 cut(s)	293
SmlI	CTYRAG	1 cut(s)	673
SmoI	CTYRAG	1 cut(s)	673
Sse9I	AATT	4 cut(s)	25, 475, 534, 648
SseBI	AGGCCT	1 cut(s)	761
SsiI	CCGC	1 cut(s)	197
SspMI	CTAG	2 cut(s)	326, 380
SstI	GAGCTC	1 cut(s)	324
StuI	AGGCCT	1 cut(s)	761
TaaI	ACNGT	3 cut(s)	440, 449, 710
TaqI	TCGA	2 cut(s)	58, 556
TasI	AATT	4 cut(s)	25, 475, 534, 648
TatI	WGTACW	1 cut(s)	579
Tru1I	TTAA	1 cut(s)	69
Tru9I	TTAA	1 cut(s)	69
TscAI	CASTG	2 cut(s)	277, 715
TseFI	GTSAC	1 cut(s)	427
TseI	GCWGC	2 cut(s)	149, 383
Tsp45I	GTSAC	1 cut(s)	427
TspDTI	ATGAA	3 cut(s)	54, 171, 543
TspRI	CASTG	2 cut(s)	277, 715
VpaK11BI	GGWCC	1 cut(s)	621
XapI	RAATTY	2 cut(s)	25, 475
XmnI	GAANNNNTTC	1 cut(s)	54
XspI	CTAG	2 cut(s)	326, 380
ZrmI	AGTACT	1 cut(s)	581

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.