Rh1CG047200

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1C
OG0001318
Physical Location & Seq
Reverse (-)
8849054 .. 8851986
2933 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1CG047200.1

Sequence Viewer

Length: 1671 bp
ATGGGTTCAAACTGGAAGCTTTTTAAAGCATGTATTGAAGATAGGATCAGTGGATTGCCAGATGCAATTCTTTTCCACATTATTTCATTCCTTGAAACAAGAGATGCTGTAAAGACCTGCCTATTATCTCATAGATGGAACAATGTGTGGACTTATGTTCCGAATCTGGAGGTATATGTATCTTCACCAAAATATGACTCAGATGAACATGTGGGTCAAGCCGGGTTTGTTGATCGAGTACTTCTGTTCCGTAACTTGTCAAACATTCATAAATTCCGTCTTATCTGCCTTGGAATCGAAGATTATTTTGATCATATTGATGCTTGGGTTTGCACTGCCATTAGGCATAATGTTGTAGAACTTGAACTTGATCTTTATACCACACCCTCAAATTCCTACACAAGGTGTCTTAAGTTGCCTACAAGCATTTTCATTTGCAAGACACTGGTAGTTTTGAAGCTGATACTAACAGATCATGTTATTGCTATCCCTCCTAACTCAAGTTGTTTTCCAAGTCTCAAGTACCTTGATGTTCAGCTATATTATCCTGTTGCTGTCGACTCAGTGTTCAACGTCAAGTACCTTTTGGCAAGCTATTCTTTGAAGAATGTAAAATCGCTAAGCACAGTTGAGCTTAAATTCAAAGGTCTGAATGCGGGAGAGAACCTATATTTTGCTGGTCGTATACATAAGCTCTTTGCAGAAATTGTGAATGTCAAATATTTGTCAATTTTAGCTTCAATTGTGGGGGATCCTGACATTGCATATCAATATCCTATGCCTAGGTTCAATAATTTGAAACAGTTGGAGCTACGATGGGGGACTGATGAGAAGGCCATCGTCTGCTTACTGGGTCATAGAAATGCAGCTCAAAGAAAAGAAATCAGGGTCGTTTATAAGCAACTTTACCAAGAAGATATTATCAACGCCTTGAGTCTGAGCTCTGGTGATTTTGAGAGAGCGGTGTACCGTTGGACATTGGATCCAGCTGATTGTGATGCTGTTTTGGCTAATCTGGCCATCAAGAAACCGAGTGCAACTACAATGTCATCATCGAAATCTTCAGTGTTCGGTGTCCTGAAGAGCGTAAGAAAAGCTTACCAGCTTCGTTACAAGTGCTCTTTGGAAGAAGATCTAGCTCAACATACCAATGGTAATATCTGCAAGCTTTTGGTTGCTTTGGTGACTGCTTACCGCTGTGACGGTAATGAGATTAATGTAAAGTTGGCAAATTCAGAAGCTAATATTCTTCAGGATGCTATCAAAGACAAGTGTTTTAATCATGAAGAAATTATTAGAATCCTGAGTACACGAAGCAAGACACAGCTCATGGCAACATTCAACAAATACAGAGATGACTATGGCAACTCTATCAGCAAGAATTTCTTGGAGGATGGAGCTAATGATTTCCAGAAGGCATTGCATACTGCCGTTCGATGCCTCAATGACCACAAGAAGTGCTTTGAGAAGGTACTTCGCAAGGCGATCATAGGGACAGGGACCAATGAGGATGCCCTCACTCGTGTGATTGTTACAAGGGCAGAGAAGGACTTGAAGGACATCATGGAGGTTTACTACAAGAAGAACAGTGTTCCTCTTGAACAGGCTGTGGCCCAAGACACTTCAGGGGACTACAAGACCTTCCTCCTTACTCTGTTGGGAAAGGACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box FBD LRR_2

Protein Analysis

556

Amino Acids

63.15

Weight (kDa)

8.53

Isoelectric Point (pI)

35.4

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box PF00646 16 - 54 1.1e-06 F-box domain
Annexin PF00191 266 - 322 1.2e-11 Annexin
Annexin PF00191 413 - 475 5.2e-12 Annexin
Annexin PF00191 490 - 552 3.8e-16 Annexin
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 897
Acc36I ACCTGC 1 cut(s) 125
AccBSI CCGCTC 1 cut(s) 962
AccI GTMKAC 2 cut(s) 558, 685
AciI CCGC 3 cut(s) 656, 962, 1195
AclWI GGATC 5 cut(s) 53, 746, 759, 977, 990
AcoI YGGCCR 1 cut(s) 1017
AcsI RAATTY 5 cut(s) 272, 391, 638, 1231, 1381
AcuI CTGAAG 4 cut(s) 1047, 1100, 1235, 1608
AdeI CACNNNGTG 1 cut(s) 405
AfaI GTAC 6 cut(s) 240, 524, 581, 968, 1309, 1473
AfiI CCNNNNNNNGG 1 cut(s) 402
AflII CTTAAG 1 cut(s) 410
AflIII ACRYGT 1 cut(s) 208
AleI CACNNNNGTG 1 cut(s) 1523
Alw21I GWGCWC 2 cut(s) 944, 1121
Alw26I GTCTC 1 cut(s) 521
AlwI GGATC 5 cut(s) 53, 746, 759, 977, 990
AoxI GGCC 3 cut(s) 834, 1017, 1611
ApeKI GCWGC 1 cut(s) 866
ApoI RAATTY 5 cut(s) 272, 391, 638, 1231, 1381
AseI ATTAAT 1 cut(s) 1215
AspA2I CCTAGG 1 cut(s) 782
AspS9I GGNCC 2 cut(s) 1500, 1612
AsuC2I CCSGG 1 cut(s) 223
AsuHPI GGTGA 3 cut(s) 177, 959, 1195
AvaII GGWCC 1 cut(s) 1500
AvrII CCTAGG 1 cut(s) 782
BalI TGGCCA 1 cut(s) 1019
BamHI GGATCC 2 cut(s) 751, 982
BanII GRGCYC 1 cut(s) 944
BauI CACGAG 1 cut(s) 1521
Bbv12I GWGCWC 2 cut(s) 944, 1121
BbvI GCAGC 1 cut(s) 878
BccI CCATC 5 cut(s) 129, 810, 845, 1028, 1388
BceAI ACGGC 1 cut(s) 1415
BclI TGATCA 1 cut(s) 310
BcnI CCSGG 1 cut(s) 223
BcoDI GTCTC 1 cut(s) 521
BfaI CTAG 2 cut(s) 783, 1136
BfrI CTTAAG 1 cut(s) 410
BfuAI ACCTGC 1 cut(s) 125
BglII AGATCT 1 cut(s) 1132
BisI GCNGC 1 cut(s) 867
BlnI CCTAGG 1 cut(s) 782
BlpI GCTNAGC 1 cut(s) 620
BlsI GCNGC 1 cut(s) 868
BmcAI AGTACT 1 cut(s) 240
Bme1390I CCNGG 1 cut(s) 223
Bme18I GGWCC 1 cut(s) 1500
BmgT120I GGNCC 2 cut(s) 1500, 1612
BmiI GGNNCC 3 cut(s) 753, 984, 1501
BmrFI CCNGG 1 cut(s) 223
BmrI ACTGGG 1 cut(s) 860
BmsI GCATC 7 cut(s) 52, 94, 310, 988, 1246, 1427, 1501
BmuI ACTGGG 1 cut(s) 860
BpmI CTGGAG 1 cut(s) 188
Bpu1102I GCTNAGC 1 cut(s) 620
BpuEI CTTGAG 3 cut(s) 484, 503, 952
BpuMI CCSGG 1 cut(s) 223
BsaJI CCNNGG 2 cut(s) 289, 782
Bsc4I CCNNNNNNNGG 1 cut(s) 402
Bse1I ACTGG 3 cut(s) 17, 450, 855
Bse3DI GCAATG 2 cut(s) 759, 1418
BseDI CCNNGG 2 cut(s) 289, 782
BseGI GGATG 3 cut(s) 1261, 1399, 1516
BseLI CCNNNNNNNGG 1 cut(s) 402
BseMI GCAATG 2 cut(s) 759, 1418
BseMII CTCAG 4 cut(s) 213, 576, 929, 1295
BseNI ACTGG 3 cut(s) 17, 450, 855
BseXI GCAGC 1 cut(s) 878
BshFI GGCC 3 cut(s) 836, 1019, 1613
BsiHKAI GWGCWC 2 cut(s) 944, 1121
BsiSI CCGG 1 cut(s) 222
BslFI GGGAC 4 cut(s) 835, 1507, 1513, 1643
BslI CCNNNNNNNGG 1 cut(s) 402
BsmAI GTCTC 1 cut(s) 521
BsmFI GGGAC 4 cut(s) 835, 1507, 1513, 1643
BsmI GAATGC 1 cut(s) 658
BsnI GGCC 3 cut(s) 836, 1019, 1613
Bsp1286I GDGCHC 2 cut(s) 944, 1121
Bsp143I GATC 9 cut(s) 45, 232, 310, 370, 472, 751, 982, 1132, 1485
Bsp1720I GCTNAGC 1 cut(s) 620
BspACI CCGC 3 cut(s) 656, 962, 1195
BspANI GGCC 3 cut(s) 836, 1019, 1613
BspCNI CTCAG 4 cut(s) 212, 575, 930, 1296
BspHI TCATGA 1 cut(s) 1282
BspLI GGNNCC 3 cut(s) 753, 984, 1501
BspMI ACCTGC 1 cut(s) 125
BspPI GGATC 5 cut(s) 53, 746, 759, 977, 990
BspQI GCTCTTC 1 cut(s) 1076
BspTI CTTAAG 1 cut(s) 410
BsrBI CCGCTC 1 cut(s) 962
BsrDI GCAATG 2 cut(s) 759, 1418
BsrI ACTGG 3 cut(s) 17, 450, 855
BssECI CCNNGG 2 cut(s) 289, 782
BssMI GATC 9 cut(s) 45, 232, 310, 370, 472, 751, 982, 1132, 1485
BssNAI GTATAC 1 cut(s) 686
BssSI CACGAG 1 cut(s) 1521
BssT1I CCWWGG 2 cut(s) 289, 782
Bst1107I GTATAC 1 cut(s) 686
Bst2BI CACGAG 1 cut(s) 1521
Bst4CI ACNGT 5 cut(s) 628, 804, 971, 1205, 1589
Bst6I CTCTTC 1 cut(s) 1076
BstAFI CTTAAG 1 cut(s) 410
BstC8I GCNNGC 2 cut(s) 592, 1166
BstDEI CTNAG 5 cut(s) 199, 562, 620, 938, 1304
BstENI CCTNNNNNAGG 1 cut(s) 400
BstF5I GGATG 3 cut(s) 1261, 1399, 1516
BstKTI GATC 9 cut(s) 48, 235, 313, 373, 475, 754, 985, 1135, 1488
BstMAI GTCTC 1 cut(s) 521
BstMBI GATC 9 cut(s) 45, 232, 310, 370, 472, 751, 982, 1132, 1485
BstMWI GCNNNNNNNGC 2 cut(s) 1007, 1016
BstNSI RCATGY 2 cut(s) 33, 212
BstSCI CCNGG 1 cut(s) 221
BstV1I GCAGC 1 cut(s) 878
BstX2I RGATCY 3 cut(s) 751, 982, 1132
BstYI RGATCY 3 cut(s) 751, 982, 1132
BstZ17I GTATAC 1 cut(s) 686
BsuRI GGCC 3 cut(s) 836, 1019, 1613
BtsCI GGATG 3 cut(s) 1261, 1399, 1516
BtsI GCAGTG 1 cut(s) 333
BtsIMutI CAGTG 6 cut(s) 55, 333, 443, 570, 1071, 1594
BveI ACCTGC 1 cut(s) 125
Cac8I GCNNGC 2 cut(s) 592, 1166
CciI TCATGA 1 cut(s) 1282
Cfr13I GGNCC 2 cut(s) 1500, 1612
Csp6I GTAC 6 cut(s) 239, 523, 580, 967, 1308, 1472
CviAII CATG 6 cut(s) 30, 209, 476, 1283, 1330, 1564
CviQI GTAC 6 cut(s) 239, 523, 580, 967, 1308, 1472
DdeI CTNAG 5 cut(s) 199, 562, 620, 938, 1304
DpnI GATC 9 cut(s) 47, 234, 312, 372, 474, 753, 984, 1134, 1487
DpnII GATC 9 cut(s) 45, 232, 310, 370, 472, 751, 982, 1132, 1485
DraI TTTAAA 1 cut(s) 25
DraIII CACNNNGTG 1 cut(s) 405
EaeI YGGCCR 1 cut(s) 1017
Eam1104I CTCTTC 1 cut(s) 1076
EarI CTCTTC 1 cut(s) 1076
Ecl136II GAGCTC 1 cut(s) 942
Eco130I CCWWGG 2 cut(s) 289, 782
Eco24I GRGCYC 1 cut(s) 944
Eco47I GGWCC 1 cut(s) 1500
Eco53kI GAGCTC 1 cut(s) 942
Eco57I CTGAAG 4 cut(s) 1047, 1100, 1235, 1608
EcoICRI GAGCTC 1 cut(s) 942
EcoNI CCTNNNNNAGG 1 cut(s) 400
EcoT14I CCWWGG 2 cut(s) 289, 782
EcoT38I GRGCYC 1 cut(s) 944
ErhI CCWWGG 2 cut(s) 289, 782
FaeI CATG 6 cut(s) 33, 212, 479, 1286, 1333, 1567
FalI AAGNNNNNCTT 8 cut(s) 583, 615, 1081, 1113, 1370, 1402, 1445, 1477
FaqI GGGAC 4 cut(s) 835, 1507, 1513, 1643
FatI CATG 6 cut(s) 29, 208, 475, 1282, 1329, 1563
FauI CCCGC 1 cut(s) 649
FbaI TGATCA 1 cut(s) 310
FblI GTMKAC 2 cut(s) 558, 685
Fnu4HI GCNGC 1 cut(s) 867
FokI GGATG 3 cut(s) 1268, 1406, 1523
FriOI GRGCYC 1 cut(s) 944
Fsp4HI GCNGC 1 cut(s) 867
FspBI CTAG 2 cut(s) 783, 1136
GluI GCNGC 1 cut(s) 867
GsuI CTGGAG 1 cut(s) 188
HaeIII GGCC 3 cut(s) 836, 1019, 1613
HapII CCGG 1 cut(s) 222
Hin1II CATG 6 cut(s) 33, 212, 479, 1286, 1333, 1567
HincII GTYRAC 1 cut(s) 559
HindII GTYRAC 1 cut(s) 559
HindIII AAGCTT 3 cut(s) 17, 1095, 1166
HinfI GANTC 6 cut(s) 163, 197, 294, 560, 934, 1299
HpaII CCGG 1 cut(s) 222
HphI GGTGA 3 cut(s) 177, 959, 1195
Hpy166II GTNNAC 6 cut(s) 150, 559, 686, 967, 1310, 1573
Hpy188I TCNGA 5 cut(s) 162, 202, 651, 939, 1237
Hpy188III TCNNGA 9 cut(s) 167, 755, 1024, 1078, 1253, 1283, 1303, 1411, 1598
Hpy8I GTNNAC 6 cut(s) 150, 559, 686, 967, 1310, 1573
HpyAV CCTTC 6 cut(s) 826, 1408, 1462, 1540, 1549, 1651
HpyCH4III ACNGT 5 cut(s) 628, 804, 971, 1205, 1589
HpyCH4IV ACGT 1 cut(s) 573
HpyCH4V TGCA 9 cut(s) 65, 333, 438, 701, 764, 866, 1037, 1164, 1423
HpyF10VI GCNNNNNNNGC 2 cut(s) 1007, 1016
HpyF3I CTNAG 5 cut(s) 199, 562, 620, 938, 1304
HpySE526I ACGT 1 cut(s) 573
Hsp92II CATG 6 cut(s) 33, 212, 479, 1286, 1333, 1567
Ksp22I TGATCA 1 cut(s) 310
Kzo9I GATC 9 cut(s) 45, 232, 310, 370, 472, 751, 982, 1132, 1485
LguI GCTCTTC 1 cut(s) 1076
LmnI GCTCC 2 cut(s) 808, 1397
Lsp1109I GCAGC 1 cut(s) 878
LweI GCATC 7 cut(s) 52, 94, 310, 988, 1246, 1427, 1501
MaeI CTAG 2 cut(s) 783, 1136
MaeII ACGT 1 cut(s) 573
MaeIII GTNAC 5 cut(s) 251, 1109, 1183, 1199, 1531
MalI GATC 9 cut(s) 47, 234, 312, 372, 474, 753, 984, 1134, 1487
MbiI CCGCTC 1 cut(s) 962
MboI GATC 9 cut(s) 45, 232, 310, 370, 472, 751, 982, 1132, 1485
MfeI CAATTG 1 cut(s) 741
MflI RGATCY 3 cut(s) 751, 982, 1132
MhlI GDGCHC 2 cut(s) 944, 1121
MlsI TGGCCA 1 cut(s) 1019
MluNI TGGCCA 1 cut(s) 1019
MlyI GAGTC 3 cut(s) 191, 554, 943
MmeI TCCRAC 2 cut(s) 786, 953
Mox20I TGGCCA 1 cut(s) 1019
MscI TGGCCA 1 cut(s) 1019
MseI TTAA 5 cut(s) 24, 411, 636, 1215, 1278
MslI CAYNNNNRTG 4 cut(s) 318, 861, 1149, 1523
Msp20I TGGCCA 1 cut(s) 1019
MspA1I CMGCKG 2 cut(s) 989, 1197
MspCI CTTAAG 1 cut(s) 410
MspI CCGG 1 cut(s) 222
MspR9I CCNGG 1 cut(s) 223
MunI CAATTG 1 cut(s) 741
Mva1269I GAATGC 1 cut(s) 658
MwoI GCNNNNNNNGC 2 cut(s) 1007, 1016
NciI CCSGG 1 cut(s) 223
NdeII GATC 9 cut(s) 45, 232, 310, 370, 472, 751, 982, 1132, 1485
NlaIII CATG 6 cut(s) 33, 212, 479, 1286, 1333, 1567
NlaIV GGNNCC 3 cut(s) 753, 984, 1501
NmuCI GTSAC 2 cut(s) 1183, 1199
NspI RCATGY 2 cut(s) 33, 212
OliI CACNNNNGTG 1 cut(s) 1523
PagI TCATGA 1 cut(s) 1282
PciI ACATGT 1 cut(s) 208
PciSI GCTCTTC 1 cut(s) 1076
PctI GAATGC 1 cut(s) 658
PfeI GAWTC 3 cut(s) 163, 294, 1299
PkrI GCNGC 1 cut(s) 868
PleI GAGTC 3 cut(s) 191, 554, 942
PpsI GAGTC 3 cut(s) 191, 554, 942
PscI ACATGT 1 cut(s) 208
PshBI ATTAAT 1 cut(s) 1215
PsiI TTATAA 1 cut(s) 897
Psp124BI GAGCTC 1 cut(s) 944
PspN4I GGNNCC 3 cut(s) 753, 984, 1501
PspPI GGNCC 2 cut(s) 1500, 1612
PsuI RGATCY 3 cut(s) 751, 982, 1132
PvuII CAGCTG 1 cut(s) 989
RsaI GTAC 6 cut(s) 240, 524, 581, 968, 1309, 1473
RsaNI GTAC 6 cut(s) 239, 523, 580, 967, 1308, 1472
RseI CAYNNNNRTG 4 cut(s) 318, 861, 1149, 1523
SacI GAGCTC 1 cut(s) 944
SalI GTCGAC 1 cut(s) 557
SapI GCTCTTC 1 cut(s) 1076
SaqAI TTAA 5 cut(s) 24, 411, 636, 1215, 1278
SatI GCNGC 1 cut(s) 867
Sau3AI GATC 9 cut(s) 45, 232, 310, 370, 472, 751, 982, 1132, 1485
Sau96I GGNCC 2 cut(s) 1500, 1612
ScaI AGTACT 1 cut(s) 240
SchI GAGTC 3 cut(s) 191, 554, 943
ScrFI CCNGG 1 cut(s) 223
SduI GDGCHC 2 cut(s) 944, 1121
SfaNI GCATC 7 cut(s) 52, 94, 310, 988, 1246, 1427, 1501
SinI GGWCC 1 cut(s) 1500
SmiMI CAYNNNNRTG 4 cut(s) 318, 861, 1149, 1523
SmlI CTYRAG 4 cut(s) 410, 499, 518, 931
SmoI CTYRAG 4 cut(s) 410, 499, 518, 931
SsiI CCGC 3 cut(s) 656, 962, 1195
SspI AATATT 2 cut(s) 722, 1246
SspMI CTAG 2 cut(s) 783, 1136
SstI GAGCTC 1 cut(s) 944
StyD4I CCNGG 1 cut(s) 221
StyI CCWWGG 2 cut(s) 289, 782
TaaI ACNGT 5 cut(s) 628, 804, 971, 1205, 1589
TaiI ACGT 1 cut(s) 576
TaqI TCGA 5 cut(s) 235, 297, 558, 1055, 1435
TatI WGTACW 2 cut(s) 238, 1307
TfiI GAWTC 3 cut(s) 163, 294, 1299
Tru1I TTAA 5 cut(s) 24, 411, 636, 1215, 1278
Tru9I TTAA 5 cut(s) 24, 411, 636, 1215, 1278
TscAI CASTG 6 cut(s) 55, 340, 450, 570, 1071, 1594
TseFI GTSAC 2 cut(s) 1183, 1199
TseI GCWGC 1 cut(s) 866
Tsp45I GTSAC 2 cut(s) 1183, 1199
TspDTI ATGAA 5 cut(s) 75, 219, 257, 421, 1299
TspGWI ACGGA 2 cut(s) 239, 266
TspRI CASTG 6 cut(s) 55, 340, 450, 570, 1071, 1594
Vha464I CTTAAG 1 cut(s) 410
VpaK11BI GGWCC 1 cut(s) 1500
VspI ATTAAT 1 cut(s) 1215
XagI CCTNNNNNAGG 1 cut(s) 400
XapI RAATTY 5 cut(s) 272, 391, 638, 1231, 1381
XceI RCATGY 2 cut(s) 33, 212
XmaJI CCTAGG 1 cut(s) 782
XmiI GTMKAC 2 cut(s) 558, 685
XspI CTAG 2 cut(s) 783, 1136
ZrmI AGTACT 1 cut(s) 240
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.