Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000960.1

Orthogroup ID

OG0001318

Physical Location & Seq

Genomic Coordinates Forward (+)

15129 .. 16150

Gene Structure 1022 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000960.1_g000004.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 615 bp

atgtcatcatcgaaatcttcagtgttcggtgtcctgaagagcgtaagaaaagcttaccagcttcgttacaagtgctctttggaagaagatctagctcaacataccaatggtgatatccgcaagcttttggttgctttggtgactgctcaccgctgtgacggtaatgagattaatgtaaggttggcaaattcagaagctaatattcttcaggatgctatcaaagacaagtgttttaatcatgaagaaattattagaatcctgagtacacgaagcaagacacagctcatggcaacattcaacaaatacagagatgaccatggcaactctatcagcaagaatttcttggaggatggggctaatgatttccagaaggcattgcatactgccgttcgatgcctcaatgaccacaaaaagttctttgagaaggcgatcatagggacagggaccaatgaggatgccctcactcgtgtgattgttacaagggcagagaaggacttgaaggacatcatggaggtttactacaagaagaacggtgttcctcttgaacaggctgtggcccaagacacttcaggggactacaagacctttctccttactctgttgggaaaggactga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Annexin

Protein Analysis

204

Amino Acids

23.03

Weight (kDa)

8.58

Isoelectric Point (pI)

28.31

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001318)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G12380
fragaria_vesca	FvH4_7g02680 FvH4_7g02680
malus_domestica	MD02G1291000.v1.1 MD07G1035500.v1.1 MD07G1036200.v1.1 MD07G1036300.v1.1
prunus_persica	Prupe.2G031900_v2.0.a1 Prupe.2G031900_v2.0.a1
pyrus_communis	pycom02g24600 pycom07g02490 pycom07g02500
rosa_chinensis	RchiOBHm_Chr1g0321371 RchiOBHm_Chr1g0321531 RchiOBHm_Chr1g0321551 RchiOBHm_Chr1g0321701
rosa_laevigata	RLG00000030411 RLG00000030414 RLG00000030418
rosa_multiflora	Rmu_sc0000087.1_g000010 Rmu_sc0000087.1_g000013 Rmu_sc0000196.1_g000001 Rmu_sc0000724.1_g000024 Rmu_sc0000724.1_g000032 Rmu_sc0000960.1_g000004 Rmu_sc0003410.1_g000041 Rmu_sc0003410.1_g000044 Rmu_sc0025973.1_g000001
rosa_roxburghii	Rroxscaffold_160G00434000 Rroxscaffold_4G00327530 Rroxscaffold_4G00327560 Rroxscaffold_4G00327790
rosa_rugosa	Rorug01G0033300 Rorug01G0033500 Rorug01G0033600 Rorug01G0033700
rosa_samantha	Rh1AG044600 Rh1AG045100 Rh1AG045200 Rh1AG045600 Rh1AG046300 Rh1BG042300 Rh1BG043600 Rh1BG044800 Rh1CG047200 Rh1DG052300 Rh1DG052400 Rh1DG052800 Rh1DG054800
rosa_wichuraiana	Rw1G003980 Rw1G004000 Rw1G004080 Rw1G004120 Rw1G004140

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	118, 151
AcsI	RAATTY	2 cut(s)	187, 337
AcuI	CTGAAG	3 cut(s)	56, 191, 552
AfaI	GTAC	1 cut(s)	265
AgsI	TTSAA	3 cut(s)	298, 499, 545
AleI	CACNNNNGTG	2 cut(s)	153, 467
AluBI	AGCT	6 cut(s)	53, 61, 95, 124, 197, 283
AluI	AGCT	6 cut(s)	53, 61, 95, 124, 197, 283
Alw21I	GWGCWC	1 cut(s)	77
AoxI	GGCC	1 cut(s)	555
ApoI	RAATTY	2 cut(s)	187, 337
AseI	ATTAAT	1 cut(s)	171
AspS9I	GGNCC	2 cut(s)	444, 556
AsuHPI	GGTGA	3 cut(s)	122, 140, 151
AvaII	GGWCC	1 cut(s)	444
BauI	CACGAG	1 cut(s)	465
Bbv12I	GWGCWC	1 cut(s)	77
BccI	CCATC	1 cut(s)	344
BceAI	ACGGC	1 cut(s)	371
BfaI	CTAG	1 cut(s)	92
BglII	AGATCT	1 cut(s)	88
Bme18I	GGWCC	1 cut(s)	444
BmgT120I	GGNCC	2 cut(s)	444, 556
BmiI	GGNNCC	1 cut(s)	445
BmsI	GCATC	3 cut(s)	202, 383, 445
BsaJI	CCNNGG	1 cut(s)	316
Bse3DI	GCAATG	1 cut(s)	374
BseDI	CCNNGG	1 cut(s)	316
BseGI	GGATG	3 cut(s)	217, 355, 460
BseMI	GCAATG	1 cut(s)	374
BseMII	CTCAG	1 cut(s)	251
BshFI	GGCC	1 cut(s)	557
BsiHKAI	GWGCWC	1 cut(s)	77
BslFI	GGGAC	3 cut(s)	451, 457, 587
BsmFI	GGGAC	3 cut(s)	451, 457, 587
BsnI	GGCC	1 cut(s)	557
Bsp1286I	GDGCHC	1 cut(s)	77
Bsp143I	GATC	2 cut(s)	88, 429
Bsp19I	CCATGG	1 cut(s)	316
BspACI	CCGC	2 cut(s)	118, 151
BspANI	GGCC	1 cut(s)	557
BspCNI	CTCAG	1 cut(s)	252
BspHI	TCATGA	1 cut(s)	238
BspLI	GGNNCC	1 cut(s)	445
BspQI	GCTCTTC	1 cut(s)	32
BsrDI	GCAATG	1 cut(s)	374
BssECI	CCNNGG	1 cut(s)	316
BssMI	GATC	2 cut(s)	88, 429
BssSI	CACGAG	1 cut(s)	465
BssT1I	CCWWGG	1 cut(s)	316
Bst2BI	CACGAG	1 cut(s)	465
Bst4CI	ACNGT	2 cut(s)	161, 533
Bst6I	CTCTTC	1 cut(s)	32
BstC8I	GCNNGC	1 cut(s)	122
BstDEI	CTNAG	1 cut(s)	260
BstDSI	CCRYGG	1 cut(s)	316
BstF5I	GGATG	3 cut(s)	217, 355, 460
BstKTI	GATC	2 cut(s)	91, 432
BstMBI	GATC	2 cut(s)	88, 429
BstX2I	RGATCY	1 cut(s)	88
BstYI	RGATCY	1 cut(s)	88
BsuRI	GGCC	1 cut(s)	557
BtgI	CCRYGG	1 cut(s)	316
BtsCI	GGATG	3 cut(s)	217, 355, 460
BtsIMutI	CAGTG	1 cut(s)	27
Cac8I	GCNNGC	1 cut(s)	122
CciI	TCATGA	1 cut(s)	238
Cfr13I	GGNCC	2 cut(s)	444, 556
Csp6I	GTAC	1 cut(s)	264
CviAII	CATG	4 cut(s)	239, 286, 317, 508
CviJI	RGCY	9 cut(s)	53, 61, 95, 124, 197, 283, 356, 551, 557
CviKI_1	RGCY	9 cut(s)	53, 61, 95, 124, 197, 283, 356, 551, 557
CviQI	GTAC	1 cut(s)	264
DdeI	CTNAG	1 cut(s)	260
DpnI	GATC	2 cut(s)	90, 431
DpnII	GATC	2 cut(s)	88, 429
Eam1104I	CTCTTC	1 cut(s)	32
EarI	CTCTTC	1 cut(s)	32
Eco130I	CCWWGG	1 cut(s)	316
Eco32I	GATATC	1 cut(s)	115
Eco47I	GGWCC	1 cut(s)	444
Eco57I	CTGAAG	3 cut(s)	56, 191, 552
EcoRV	GATATC	1 cut(s)	115
EcoT14I	CCWWGG	1 cut(s)	316
ErhI	CCWWGG	1 cut(s)	316
FaeI	CATG	4 cut(s)	242, 289, 320, 511
FaiI	YATR	7 cut(s)	102, 240, 287, 318, 381, 434, 509
FalI	AAGNNNNNCTT	4 cut(s)	37, 69, 326, 358
FaqI	GGGAC	3 cut(s)	451, 457, 587
FatI	CATG	4 cut(s)	238, 285, 316, 507
FokI	GGATG	3 cut(s)	224, 362, 467
FspBI	CTAG	1 cut(s)	92
HaeIII	GGCC	1 cut(s)	557
Hin1II	CATG	4 cut(s)	242, 289, 320, 511
HindIII	AAGCTT	2 cut(s)	51, 122
HinfI	GANTC	1 cut(s)	255
HphI	GGTGA	3 cut(s)	122, 140, 151
Hpy166II	GTNNAC	2 cut(s)	266, 517
Hpy188I	TCNGA	1 cut(s)	193
Hpy188III	TCNNGA	6 cut(s)	34, 209, 239, 259, 367, 542
Hpy8I	GTNNAC	2 cut(s)	266, 517
HpyAV	CCTTC	4 cut(s)	364, 418, 484, 493
HpyCH4III	ACNGT	2 cut(s)	161, 533
HpyCH4V	TGCA	1 cut(s)	379
HpyF3I	CTNAG	1 cut(s)	260
Hsp92II	CATG	4 cut(s)	242, 289, 320, 511
Kzo9I	GATC	2 cut(s)	88, 429
LguI	GCTCTTC	1 cut(s)	32
LpnPI	CCDG	8 cut(s)	47, 71, 194, 272, 380, 426, 533, 555
LweI	GCATC	3 cut(s)	202, 383, 445
MaeI	CTAG	1 cut(s)	92
MaeIII	GTNAC	4 cut(s)	65, 139, 155, 475
MalI	GATC	2 cut(s)	90, 431
MboI	GATC	2 cut(s)	88, 429
MboII	GAAGA	7 cut(s)	9, 49, 95, 98, 197, 254, 538
MflI	RGATCY	1 cut(s)	88
MhlI	GDGCHC	1 cut(s)	77
MluCI	AATT	3 cut(s)	187, 246, 337
MnlI	CCTC	6 cut(s)	340, 407, 445, 470, 505, 549
MseI	TTAA	2 cut(s)	171, 234
MslI	CAYNNNNRTG	3 cut(s)	105, 153, 467
MspA1I	CMGCKG	1 cut(s)	153
NcoI	CCATGG	1 cut(s)	316
NdeII	GATC	2 cut(s)	88, 429
NlaIII	CATG	4 cut(s)	242, 289, 320, 511
NlaIV	GGNNCC	1 cut(s)	445
NmuCI	GTSAC	2 cut(s)	139, 155
OliI	CACNNNNGTG	2 cut(s)	153, 467
PagI	TCATGA	1 cut(s)	238
PciSI	GCTCTTC	1 cut(s)	32
PfeI	GAWTC	1 cut(s)	255
PshBI	ATTAAT	1 cut(s)	171
PspN4I	GGNNCC	1 cut(s)	445
PspPI	GGNCC	2 cut(s)	444, 556
PsuI	RGATCY	1 cut(s)	88
RsaI	GTAC	1 cut(s)	265
RsaNI	GTAC	1 cut(s)	264
RseI	CAYNNNNRTG	3 cut(s)	105, 153, 467
SapI	GCTCTTC	1 cut(s)	32
SaqAI	TTAA	2 cut(s)	171, 234
Sau3AI	GATC	2 cut(s)	88, 429
Sau96I	GGNCC	2 cut(s)	444, 556
SduI	GDGCHC	1 cut(s)	77
SetI	ASST	9 cut(s)	55, 63, 97, 126, 182, 199, 285, 516, 587
SfaNI	GCATC	3 cut(s)	202, 383, 445
SinI	GGWCC	1 cut(s)	444
SmiMI	CAYNNNNRTG	3 cut(s)	105, 153, 467
Sse9I	AATT	3 cut(s)	187, 246, 337
SsiI	CCGC	2 cut(s)	118, 151
SspI	AATATT	1 cut(s)	202
SspMI	CTAG	1 cut(s)	92
StyI	CCWWGG	1 cut(s)	316
TaaI	ACNGT	2 cut(s)	161, 533
TaqI	TCGA	2 cut(s)	11, 391
TasI	AATT	3 cut(s)	187, 246, 337
TatI	WGTACW	1 cut(s)	263
TfiI	GAWTC	1 cut(s)	255
Tru1I	TTAA	2 cut(s)	171, 234
Tru9I	TTAA	2 cut(s)	171, 234
TscAI	CASTG	1 cut(s)	27
TseFI	GTSAC	2 cut(s)	139, 155
Tsp45I	GTSAC	2 cut(s)	139, 155
TspDTI	ATGAA	1 cut(s)	255
TspRI	CASTG	1 cut(s)	27
VpaK11BI	GGWCC	1 cut(s)	444
VspI	ATTAAT	1 cut(s)	171
XapI	RAATTY	2 cut(s)	187, 337
XspI	CTAG	1 cut(s)	92

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.