Rorug01G0033600

Annexin-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000001
OG0001318
Physical Location & Seq
Reverse (-)
5665397 .. 5666505
1109 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug01G0033600.1

Sequence Viewer

Length: 393 bp
ATGGCAAAGCTTCTCATCTCCAACACCGCCTCTCTCTCCCTCTCTCCACCCTCTTCCTCCTCCTCACGTGCTTCATTCAACCCTCCGCACGTGCCGCCGGCTCGGTTATTCCTCGCCGGGAAATCCAGCAACAGAGGCGTCACCACGGTGGTGACTCGAGCGGGCCCCACCACGAGCCAGTACGTGTTCGCATTCGTTTTGCCGCTCTCACTGATCGCCTTCACCGTCTTCACCTCCATCAGAATCGCTGACAAGCTCGACAGAGACTATCTCGAGGAGGTTGCAATTAACCAAGCTATTAGGGAAACTGATGAGGATGATGAAGTTGACATGTCTCTGGAAGAAAAAGCTGCCGTTCCACGCACTCGTAATCGTCCCAAAAGGGAAGTCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Annexin

Protein Analysis

130

Amino Acids

14.25

Weight (kDa)

8.09

Isoelectric Point (pI)

41.72

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 2 cut(s) 161, 205
AciI CCGC 5 cut(s) 27, 86, 95, 161, 203
AcvI CACGTG 2 cut(s) 68, 91
AcyI GRCGYC 1 cut(s) 138
AfaI GTAC 1 cut(s) 182
AflIII ACRYGT 2 cut(s) 183, 330
AgsI TTSAA 1 cut(s) 79
AleI CACNNNNGTG 2 cut(s) 146, 149
AluBI AGCT 4 cut(s) 10, 256, 296, 350
AluI AGCT 4 cut(s) 10, 256, 296, 350
Alw26I GTCTC 2 cut(s) 258, 339
Ama87I CYCGRG 2 cut(s) 156, 272
AoxI GGCC 1 cut(s) 163
ApaI GGGCCC 1 cut(s) 167
ApeKI GCWGC 1 cut(s) 350
ArsI GACNNNNNNTTYG 1 cut(s) 372
AspS9I GGNCC 2 cut(s) 163, 164
AsuC2I CCSGG 1 cut(s) 118
AsuHPI GGTGA 4 cut(s) 133, 163, 214, 223
AvaI CYCGRG 2 cut(s) 156, 272
BaeGI GKGCMC 1 cut(s) 167
BanII GRGCYC 1 cut(s) 167
BauI CACGAG 1 cut(s) 172
BbrPI CACGTG 2 cut(s) 68, 91
BbsI GAAGAC 1 cut(s) 220
BbvI GCAGC 1 cut(s) 337
BccI CCATC 1 cut(s) 245
BceAI ACGGC 1 cut(s) 338
BcgI CGANNNNNNTGC 2 cut(s) 263, 297
BcnI CCSGG 1 cut(s) 118
BcoDI GTCTC 2 cut(s) 258, 339
BfaI CTAG 1 cut(s) 391
BisI GCNGC 3 cut(s) 95, 203, 351
BlsI GCNGC 3 cut(s) 96, 204, 352
Bme1390I CCNGG 1 cut(s) 118
BmeT110I CYCGRG 2 cut(s) 156, 272
BmgT120I GGNCC 2 cut(s) 163, 164
BmiI GGNNCC 2 cut(s) 165, 166
BmrFI CCNGG 1 cut(s) 118
BpiI GAAGAC 1 cut(s) 220
BplI GAGNNNNNCTC 2 cut(s) 255, 287
BpuMI CCSGG 1 cut(s) 118
BsaAI YACGTR 3 cut(s) 68, 91, 184
BsaHI GRCGYC 1 cut(s) 138
BsaJI CCNNGG 1 cut(s) 144
Bse118I RCCGGY 1 cut(s) 97
Bse1I ACTGG 1 cut(s) 178
BseDI CCNNGG 1 cut(s) 144
BseGI GGATG 1 cut(s) 322
BseNI ACTGG 1 cut(s) 178
BseRI GAGGAG 3 cut(s) 49, 52, 290
BseSI GKGCMC 1 cut(s) 167
BseXI GCAGC 1 cut(s) 337
BshFI GGCC 1 cut(s) 165
BsiHKCI CYCGRG 2 cut(s) 156, 272
BsiSI CCGG 2 cut(s) 98, 117
BslFI GGGAC 1 cut(s) 360
BsmAI GTCTC 2 cut(s) 258, 339
BsmFI GGGAC 1 cut(s) 360
BsmI GAATGC 1 cut(s) 191
BsnI GGCC 1 cut(s) 165
BsoBI CYCGRG 2 cut(s) 156, 272
Bsp120I GGGCCC 1 cut(s) 163
Bsp1286I GDGCHC 1 cut(s) 167
Bsp143I GATC 1 cut(s) 213
BspACI CCGC 5 cut(s) 27, 86, 95, 161, 203
BspANI GGCC 1 cut(s) 165
BspLI GGNNCC 2 cut(s) 165, 166
BsrBI CCGCTC 2 cut(s) 161, 205
BsrFI RCCGGY 1 cut(s) 97
BsrI ACTGG 1 cut(s) 178
BssAI RCCGGY 1 cut(s) 97
BssECI CCNNGG 1 cut(s) 144
BssMI GATC 1 cut(s) 213
BssNI GRCGYC 1 cut(s) 138
BssSI CACGAG 1 cut(s) 172
Bst2BI CACGAG 1 cut(s) 172
Bst4CI ACNGT 2 cut(s) 148, 226
Bst6I CTCTTC 1 cut(s) 58
BstACI GRCGYC 1 cut(s) 138
BstBAI YACGTR 3 cut(s) 68, 91, 184
BstC8I GCNNGC 2 cut(s) 99, 163
BstDSI CCRYGG 1 cut(s) 144
BstF5I GGATG 1 cut(s) 322
BstKTI GATC 1 cut(s) 216
BstMAI GTCTC 2 cut(s) 258, 339
BstMBI GATC 1 cut(s) 213
BstMWI GCNNNNNNNGC 2 cut(s) 94, 135
BstNSI RCATGY 1 cut(s) 334
BstSCI CCNGG 1 cut(s) 116
BstSLI GKGCMC 1 cut(s) 167
BstV1I GCAGC 1 cut(s) 337
BstV2I GAAGAC 1 cut(s) 220
BsuRI GGCC 1 cut(s) 165
BtgI CCRYGG 1 cut(s) 144
BtsCI GGATG 1 cut(s) 322
BtsIMutI CAGTG 1 cut(s) 209
Cac8I GCNNGC 2 cut(s) 99, 163
Cfr10I RCCGGY 1 cut(s) 97
Cfr13I GGNCC 2 cut(s) 163, 164
CseI GACGC 1 cut(s) 127
Csp6I GTAC 1 cut(s) 181
CviAII CATG 1 cut(s) 331
CviJI RGCY 7 cut(s) 10, 101, 165, 177, 256, 296, 350
CviKI_1 RGCY 7 cut(s) 10, 101, 165, 177, 256, 296, 350
CviQI GTAC 1 cut(s) 181
DpnI GATC 1 cut(s) 215
DpnII GATC 1 cut(s) 213
Eam1104I CTCTTC 1 cut(s) 58
EarI CTCTTC 1 cut(s) 58
Eco24I GRGCYC 1 cut(s) 167
Eco72I CACGTG 2 cut(s) 68, 91
Eco88I CYCGRG 2 cut(s) 156, 272
EcoO109I RGGNCCY 1 cut(s) 164
EcoT38I GRGCYC 1 cut(s) 167
FaeI CATG 1 cut(s) 334
FaiI YATR 1 cut(s) 332
FaqI GGGAC 1 cut(s) 360
FatI CATG 1 cut(s) 330
FauI CCCGC 1 cut(s) 154
Fnu4HI GCNGC 3 cut(s) 95, 203, 351
FokI GGATG 1 cut(s) 329
FriOI GRGCYC 1 cut(s) 167
Fsp4HI GCNGC 3 cut(s) 95, 203, 351
FspBI CTAG 1 cut(s) 391
GluI GCNGC 3 cut(s) 95, 203, 351
HaeIII GGCC 1 cut(s) 165
HapII CCGG 2 cut(s) 98, 117
HgaI GACGC 1 cut(s) 127
Hin1I GRCGYC 1 cut(s) 138
Hin1II CATG 1 cut(s) 334
HincII GTYRAC 1 cut(s) 328
HindII GTYRAC 1 cut(s) 328
HindIII AAGCTT 1 cut(s) 8
HinfI GANTC 2 cut(s) 154, 243
HpaII CCGG 2 cut(s) 98, 117
HphI GGTGA 4 cut(s) 133, 163, 214, 223
Hpy166II GTNNAC 1 cut(s) 328
Hpy188I TCNGA 1 cut(s) 242
Hpy188III TCNNGA 2 cut(s) 272, 338
Hpy8I GTNNAC 1 cut(s) 328
HpyAV CCTTC 1 cut(s) 229
HpyCH4III ACNGT 2 cut(s) 148, 226
HpyCH4IV ACGT 3 cut(s) 67, 90, 183
HpyCH4V TGCA 1 cut(s) 284
HpyF10VI GCNNNNNNNGC 2 cut(s) 94, 135
HpySE526I ACGT 3 cut(s) 67, 90, 183
Hsp92I GRCGYC 1 cut(s) 138
Hsp92II CATG 1 cut(s) 334
KroI GCCGGC 1 cut(s) 97
KroNI GCCGGC 1 cut(s) 99
Kzo9I GATC 1 cut(s) 213
LpnPI CCDG 5 cut(s) 111, 130, 139, 191, 323
Lsp1109I GCAGC 1 cut(s) 337
MaeI CTAG 1 cut(s) 391
MaeII ACGT 3 cut(s) 67, 90, 183
MaeIII GTNAC 2 cut(s) 139, 151
MalI GATC 1 cut(s) 215
MbiI CCGCTC 2 cut(s) 161, 205
MboI GATC 1 cut(s) 213
MboII GAAGA 3 cut(s) 45, 220, 353
MhlI GDGCHC 1 cut(s) 167
MluCI AATT 1 cut(s) 285
MlyI GAGTC 1 cut(s) 148
MmeI TCCRAC 1 cut(s) 45
MroNI GCCGGC 1 cut(s) 97
MseI TTAA 1 cut(s) 288
MslI CAYNNNNRTG 2 cut(s) 146, 149
MspI CCGG 2 cut(s) 98, 117
MspR9I CCNGG 1 cut(s) 118
Mva1269I GAATGC 1 cut(s) 191
MwoI GCNNNNNNNGC 2 cut(s) 94, 135
NaeI GCCGGC 1 cut(s) 99
NciI CCSGG 1 cut(s) 118
NdeII GATC 1 cut(s) 213
NgoMIV GCCGGC 1 cut(s) 97
NlaIII CATG 1 cut(s) 334
NlaIV GGNNCC 2 cut(s) 165, 166
NmuCI GTSAC 2 cut(s) 139, 151
NspI RCATGY 1 cut(s) 334
OliI CACNNNNGTG 2 cut(s) 146, 149
PaeR7I CTCGAG 2 cut(s) 156, 272
PciI ACATGT 1 cut(s) 330
PcsI WCGNNNNNNNCGW 1 cut(s) 222
PctI GAATGC 1 cut(s) 191
PdiI GCCGGC 1 cut(s) 99
PfeI GAWTC 1 cut(s) 243
PkrI GCNGC 3 cut(s) 96, 204, 352
PleI GAGTC 1 cut(s) 148
PmaCI CACGTG 2 cut(s) 68, 91
PmlI CACGTG 2 cut(s) 68, 91
PpsI GAGTC 1 cut(s) 148
Ppu21I YACGTR 3 cut(s) 68, 91, 184
PscI ACATGT 1 cut(s) 330
PspCI CACGTG 2 cut(s) 68, 91
PspN4I GGNNCC 2 cut(s) 165, 166
PspOMI GGGCCC 1 cut(s) 163
PspPI GGNCC 2 cut(s) 163, 164
PspXI VCTCGAGB 1 cut(s) 156
RsaI GTAC 1 cut(s) 182
RsaNI GTAC 1 cut(s) 181
RseI CAYNNNNRTG 2 cut(s) 146, 149
SaqAI TTAA 1 cut(s) 288
SatI GCNGC 3 cut(s) 95, 203, 351
Sau3AI GATC 1 cut(s) 213
Sau96I GGNCC 2 cut(s) 163, 164
SchI GAGTC 1 cut(s) 148
ScrFI CCNGG 1 cut(s) 118
SduI GDGCHC 1 cut(s) 167
SetI ASST 9 cut(s) 12, 70, 93, 186, 236, 258, 282, 298, 352
Sfr274I CTCGAG 2 cut(s) 156, 272
SlaI CTCGAG 2 cut(s) 156, 272
SmiMI CAYNNNNRTG 2 cut(s) 146, 149
SmlI CTYRAG 2 cut(s) 156, 272
SmoI CTYRAG 2 cut(s) 156, 272
Sse9I AATT 1 cut(s) 285
SsiI CCGC 5 cut(s) 27, 86, 95, 161, 203
SspMI CTAG 1 cut(s) 391
StyD4I CCNGG 1 cut(s) 116
TaaI ACNGT 2 cut(s) 148, 226
TaiI ACGT 3 cut(s) 70, 93, 186
TaqI TCGA 3 cut(s) 157, 258, 273
TasI AATT 1 cut(s) 285
TauI GCSGC 2 cut(s) 97, 205
TfiI GAWTC 1 cut(s) 243
Tru1I TTAA 1 cut(s) 288
Tru9I TTAA 1 cut(s) 288
TscAI CASTG 1 cut(s) 216
TseFI GTSAC 2 cut(s) 139, 151
TseI GCWGC 1 cut(s) 350
Tsp45I GTSAC 2 cut(s) 139, 151
TspDTI ATGAA 2 cut(s) 63, 336
TspRI CASTG 1 cut(s) 216
XceI RCATGY 1 cut(s) 334
XhoI CTCGAG 2 cut(s) 156, 272
XspI CTAG 1 cut(s) 391
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.