FvH4_7g02680

Annexin-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb7
OG0001318
Physical Location & Seq
Reverse (-)
2972152 .. 2975214
3063 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_7g02680.t1

Sequence Viewer

Length: 942 bp
ATGGCATCCCTCATTACTCCAGATCAATTTTCTGCTAACCAAGATGCAGAGGCTCTTCGAAAGGCCTGTCAAGGTTGGGGGACCAATGAGAAGGCTGTCATCTCCATCCTGGGTCATAGAAATGCAGGTCAAAGAAAAGAGATCAGGGCAGCTTATGAACAACTTTATCAAGAAGATCTTCTCAAGCGCCTTGAGTCTGAGCTCTCTGGTGATTTTGAGAAAGCAGTGTACCGCTGGATATTGGATCCAGCAGATCGTGATGCAGTTTTGGCTAATGTGGCCATCAAGAAATCCACTGACTACAATGTCATAATTGAAATTTCCTGCATTCACTCCCCTGAAGAGCTTCTAGCTGTAAGAAGAGCTTACCAGCTTCGCTACAAGCACTCTGTGGAAGAAGATCTAGCTGCACATACTACCGGTGATATCCGCAAGCTTTTGGTTGCTTTGGTGACTGCTTACCGCTATGACGGTCACGAGATCAATGCAAAGTTGGCAAATTCGGAAGCAGATATTCTTCAAGATGCTATCAAAGACAAGGCTTTCAATCTTGAAGAAATTATTAGGATCCTGAGTACTAGGAGCAAGACACAACTCATGGCGACATTCAACAAATACAGAGATGATCAAGGCATTTCTATCAGCAAGAATTTGCTGGAAGAAGGAGCTAATGATTTCCAGAAGGCATTGCATACTGCCATTCGATGCCTCAATGACCCCAAGAAGTACTTTGAGAAGGTACTTCGCAATGCAATAAAAAGAGTCGGCACCGATGAGGATGCTCTCACTCGTGTGATTGTTACAAGGGCAGAGAGGGACTTGAGGGACATCAAGGAGGTTTACTACAAGAAAAATAGTGTTCCTCTTGAACAGGCTGTGGCCAAAGACACTTCAGGGGACTACAAGGCCTTCCTCCTTACTCTGCTGGGAAAGGAAGATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Annexin

Protein Analysis

314

Amino Acids

35.55

Weight (kDa)

6.36

Isoelectric Point (pI)

36.92

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Annexin PF00191 14 - 76 3.2e-23 Annexin
Annexin PF00191 87 - 150 4.7e-13 Annexin
Annexin PF00191 169 - 231 1.3e-10 Annexin
Annexin PF00191 243 - 308 5e-18 Annexin
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 305
Acc36I ACCTGC 1 cut(s) 116
AccB1I GGYRCC 1 cut(s) 767
AciI CCGC 3 cut(s) 232, 430, 463
AclWI GGATC 4 cut(s) 239, 252, 562, 575
AcoI YGGCCR 2 cut(s) 279, 879
AcsI RAATTY 3 cut(s) 318, 499, 649
AcuI CTGAAG 2 cut(s) 360, 876
AdeI CACNNNGTG 1 cut(s) 391
AfaI GTAC 4 cut(s) 230, 577, 728, 741
AgeI ACCGGT 1 cut(s) 419
AgsI TTSAA 6 cut(s) 317, 521, 547, 554, 610, 869
AjnI CCWGG 1 cut(s) 108
AleI CACNNNNGTG 1 cut(s) 791
AluBI AGCT 9 cut(s) 152, 202, 346, 353, 365, 373, 407, 436, 668
AluI AGCT 9 cut(s) 152, 202, 346, 353, 365, 373, 407, 436, 668
Alw21I GWGCWC 1 cut(s) 204
AlwI GGATC 4 cut(s) 239, 252, 562, 575
AoxI GGCC 4 cut(s) 63, 279, 879, 906
ApeKI GCWGC 2 cut(s) 149, 407
ApoI RAATTY 3 cut(s) 318, 499, 649
ArsI GACNNNNNNTTYG 2 cut(s) 52, 84
AsiGI ACCGGT 1 cut(s) 419
Asp700I GAANNNNTTC 2 cut(s) 177, 345
AspLEI GCGC 1 cut(s) 189
AspS9I GGNCC 1 cut(s) 81
AsuHPI GGTGA 3 cut(s) 221, 434, 463
AsuII TTCGAA 1 cut(s) 58
AvaII GGWCC 1 cut(s) 81
BalI TGGCCA 2 cut(s) 281, 881
BamHI GGATCC 2 cut(s) 244, 567
BanI GGYRCC 1 cut(s) 767
BanII GRGCYC 1 cut(s) 204
BauI CACGAG 2 cut(s) 476, 789
Bbv12I GWGCWC 1 cut(s) 204
BbvI GCAGC 2 cut(s) 161, 394
BccI CCATC 2 cut(s) 113, 290
BcgI CGANNNNNNTGC 4 cut(s) 467, 501, 761, 795
BciT130I CCWGG 1 cut(s) 110
BclI TGATCA 1 cut(s) 625
BfaI CTAG 3 cut(s) 350, 404, 579
BfoI RGCGCY 1 cut(s) 190
BfuAI ACCTGC 1 cut(s) 116
BglII AGATCT 2 cut(s) 175, 400
BisI GCNGC 2 cut(s) 150, 408
BlsI GCNGC 2 cut(s) 151, 409
BmcAI AGTACT 2 cut(s) 577, 728
Bme1390I CCNGG 1 cut(s) 110
Bme18I GGWCC 1 cut(s) 81
BmgT120I GGNCC 1 cut(s) 81
BmiI GGNNCC 4 cut(s) 82, 246, 569, 769
BmrFI CCNGG 1 cut(s) 110
BmsI GCATC 6 cut(s) 14, 34, 250, 514, 695, 769
Bpu14I TTCGAA 1 cut(s) 58
BpuEI CTTGAG 3 cut(s) 167, 212, 841
BsaJI CCNNGG 1 cut(s) 109
BsaWI WCCGGW 1 cut(s) 419
Bse118I RCCGGY 1 cut(s) 419
Bse3DI GCAATG 2 cut(s) 686, 754
BseBI CCWGG 1 cut(s) 110
BseDI CCNNGG 1 cut(s) 109
BseGI GGATG 3 cut(s) 5, 105, 784
BseMI GCAATG 2 cut(s) 686, 754
BseMII CTCAG 2 cut(s) 189, 563
BseXI GCAGC 2 cut(s) 161, 394
BseYI CCCAGC 1 cut(s) 925
BsgI GTGCAG 1 cut(s) 393
BshFI GGCC 4 cut(s) 65, 281, 881, 908
BshNI GGYRCC 1 cut(s) 767
BshTI ACCGGT 1 cut(s) 419
BsiHKAI GWGCWC 1 cut(s) 204
BsiSI CCGG 1 cut(s) 420
BslFI GGGAC 4 cut(s) 94, 830, 839, 911
BsmFI GGGAC 4 cut(s) 94, 830, 839, 911
BsmI GAATGC 1 cut(s) 327
BsnI GGCC 4 cut(s) 65, 281, 881, 908
Bsp119I TTCGAA 1 cut(s) 58
Bsp1286I GDGCHC 1 cut(s) 204
Bsp143I GATC 9 cut(s) 22, 141, 175, 244, 253, 400, 480, 567, 625
BspACI CCGC 3 cut(s) 232, 430, 463
BspANI GGCC 4 cut(s) 65, 281, 881, 908
BspCNI CTCAG 2 cut(s) 190, 564
BspLI GGNNCC 4 cut(s) 82, 246, 569, 769
BspMI ACCTGC 1 cut(s) 116
BspPI GGATC 4 cut(s) 239, 252, 562, 575
BspQI GCTCTTC 3 cut(s) 60, 336, 355
BspT104I TTCGAA 1 cut(s) 58
BspT107I GGYRCC 1 cut(s) 767
BsrDI GCAATG 2 cut(s) 686, 754
BsrFI RCCGGY 1 cut(s) 419
BssAI RCCGGY 1 cut(s) 419
BssECI CCNNGG 1 cut(s) 109
BssMI GATC 9 cut(s) 22, 141, 175, 244, 253, 400, 480, 567, 625
BssSI CACGAG 2 cut(s) 476, 789
Bst2BI CACGAG 2 cut(s) 476, 789
Bst2UI CCWGG 1 cut(s) 110
Bst4CI ACNGT 1 cut(s) 473
Bst6I CTCTTC 3 cut(s) 60, 336, 355
BstBI TTCGAA 1 cut(s) 58
BstC8I GCNNGC 1 cut(s) 434
BstDEI CTNAG 2 cut(s) 198, 572
BstF5I GGATG 3 cut(s) 5, 105, 784
BstH2I RGCGCY 1 cut(s) 190
BstHHI GCGC 1 cut(s) 189
BstKTI GATC 9 cut(s) 25, 144, 178, 247, 256, 403, 483, 570, 628
BstMBI GATC 9 cut(s) 22, 141, 175, 244, 253, 400, 480, 567, 625
BstMWI GCNNNNNNNGC 3 cut(s) 269, 278, 494
BstNI CCWGG 1 cut(s) 110
BstSCI CCNGG 1 cut(s) 108
BstV1I GCAGC 2 cut(s) 161, 394
BstX2I RGATCY 4 cut(s) 175, 244, 400, 567
BstYI RGATCY 4 cut(s) 175, 244, 400, 567
BsuRI GGCC 4 cut(s) 65, 281, 881, 908
BtsCI GGATG 3 cut(s) 5, 105, 784
BtsI GCAGTG 1 cut(s) 231
BtsIMutI CAGTG 2 cut(s) 231, 294
BveI ACCTGC 1 cut(s) 116
Cac8I GCNNGC 1 cut(s) 434
CfoI GCGC 1 cut(s) 189
Cfr10I RCCGGY 1 cut(s) 419
Cfr13I GGNCC 1 cut(s) 81
Csp6I GTAC 4 cut(s) 229, 576, 727, 740
CspAI ACCGGT 1 cut(s) 419
CviAII CATG 1 cut(s) 598
CviQI GTAC 4 cut(s) 229, 576, 727, 740
DdeI CTNAG 2 cut(s) 198, 572
DpnI GATC 9 cut(s) 24, 143, 177, 246, 255, 402, 482, 569, 627
DpnII GATC 9 cut(s) 22, 141, 175, 244, 253, 400, 480, 567, 625
DraIII CACNNNGTG 1 cut(s) 391
DrdI GACNNNNNNGTC 1 cut(s) 305
DseDI GACNNNNNNGTC 1 cut(s) 305
EaeI YGGCCR 2 cut(s) 279, 879
Eam1104I CTCTTC 3 cut(s) 60, 336, 355
EarI CTCTTC 3 cut(s) 60, 336, 355
Ecl136II GAGCTC 1 cut(s) 202
Eco147I AGGCCT 2 cut(s) 65, 908
Eco24I GRGCYC 1 cut(s) 204
Eco32I GATATC 1 cut(s) 427
Eco47I GGWCC 1 cut(s) 81
Eco53kI GAGCTC 1 cut(s) 202
Eco57I CTGAAG 2 cut(s) 360, 876
EcoICRI GAGCTC 1 cut(s) 202
EcoRII CCWGG 1 cut(s) 108
EcoRV GATATC 1 cut(s) 427
EcoT38I GRGCYC 1 cut(s) 204
FaeI CATG 1 cut(s) 601
FaiI YATR 7 cut(s) 117, 156, 311, 414, 468, 599, 693
FalI AAGNNNNNCTT 6 cut(s) 162, 194, 349, 381, 713, 745
FaqI GGGAC 4 cut(s) 94, 830, 839, 911
FatI CATG 1 cut(s) 597
FbaI TGATCA 1 cut(s) 625
Fnu4HI GCNGC 2 cut(s) 150, 408
FokI GGATG 2 cut(s) 92, 791
FriOI GRGCYC 1 cut(s) 204
Fsp4HI GCNGC 2 cut(s) 150, 408
FspBI CTAG 3 cut(s) 350, 404, 579
GlaI GCGC 1 cut(s) 188
GluI GCNGC 2 cut(s) 150, 408
GsaI CCCAGC 1 cut(s) 929
HaeII RGCGCY 1 cut(s) 190
HaeIII GGCC 4 cut(s) 65, 281, 881, 908
HapII CCGG 1 cut(s) 420
HhaI GCGC 1 cut(s) 189
Hin1II CATG 1 cut(s) 601
Hin6I GCGC 1 cut(s) 187
HinP1I GCGC 1 cut(s) 187
HindIII AAGCTT 1 cut(s) 434
HinfI GANTC 2 cut(s) 194, 762
HpaII CCGG 1 cut(s) 420
HphI GGTGA 3 cut(s) 221, 434, 463
Hpy166II GTNNAC 2 cut(s) 229, 841
Hpy188I TCNGA 2 cut(s) 199, 505
Hpy8I GTNNAC 2 cut(s) 229, 841
HpyAV CCTTC 5 cut(s) 85, 656, 676, 730, 919
HpyCH4III ACNGT 1 cut(s) 473
HpyCH4V TGCA 8 cut(s) 47, 125, 263, 327, 410, 488, 691, 752
HpyF10VI GCNNNNNNNGC 3 cut(s) 269, 278, 494
HpyF3I CTNAG 2 cut(s) 198, 572
Hsp92II CATG 1 cut(s) 601
HspAI GCGC 1 cut(s) 187
Ksp22I TGATCA 1 cut(s) 625
Kzo9I GATC 9 cut(s) 22, 141, 175, 244, 253, 400, 480, 567, 625
LguI GCTCTTC 3 cut(s) 60, 336, 355
LmnI GCTCC 2 cut(s) 582, 665
Lsp1109I GCAGC 2 cut(s) 161, 394
LweI GCATC 6 cut(s) 14, 34, 250, 514, 695, 769
MaeI CTAG 3 cut(s) 350, 404, 579
MaeIII GTNAC 3 cut(s) 451, 473, 799
MalI GATC 9 cut(s) 24, 143, 177, 246, 255, 402, 482, 569, 627
MboI GATC 9 cut(s) 22, 141, 175, 244, 253, 400, 480, 567, 625
MflI RGATCY 4 cut(s) 175, 244, 400, 567
MhlI GDGCHC 1 cut(s) 204
MlsI TGGCCA 2 cut(s) 281, 881
MluCI AATT 6 cut(s) 26, 312, 318, 499, 558, 649
MluNI TGGCCA 2 cut(s) 281, 881
MlyI GAGTC 2 cut(s) 203, 771
MnlI CCTC 9 cut(s) 20, 43, 719, 769, 807, 816, 829, 873, 923
Mox20I TGGCCA 2 cut(s) 281, 881
MroXI GAANNNNTTC 2 cut(s) 177, 345
MscI TGGCCA 2 cut(s) 281, 881
MslI CAYNNNNRTG 2 cut(s) 120, 791
Msp20I TGGCCA 2 cut(s) 281, 881
MspA1I CMGCKG 1 cut(s) 234
MspI CCGG 1 cut(s) 420
MspR9I CCNGG 1 cut(s) 110
Mva1269I GAATGC 1 cut(s) 327
MvaI CCWGG 1 cut(s) 110
MwoI GCNNNNNNNGC 3 cut(s) 269, 278, 494
NdeII GATC 9 cut(s) 22, 141, 175, 244, 253, 400, 480, 567, 625
NlaIII CATG 1 cut(s) 601
NlaIV GGNNCC 4 cut(s) 82, 246, 569, 769
NmuCI GTSAC 2 cut(s) 451, 473
NspV TTCGAA 1 cut(s) 58
OliI CACNNNNGTG 1 cut(s) 791
PceI AGGCCT 2 cut(s) 65, 908
PciSI GCTCTTC 3 cut(s) 60, 336, 355
PctI GAATGC 1 cut(s) 327
PdmI GAANNNNTTC 2 cut(s) 177, 345
PinAI ACCGGT 1 cut(s) 419
PkrI GCNGC 2 cut(s) 151, 409
PleI GAGTC 2 cut(s) 202, 770
PpsI GAGTC 2 cut(s) 202, 770
Psp124BI GAGCTC 1 cut(s) 204
Psp6I CCWGG 1 cut(s) 108
PspFI CCCAGC 1 cut(s) 925
PspGI CCWGG 1 cut(s) 108
PspN4I GGNNCC 4 cut(s) 82, 246, 569, 769
PspPI GGNCC 1 cut(s) 81
PsuI RGATCY 4 cut(s) 175, 244, 400, 567
RsaI GTAC 4 cut(s) 230, 577, 728, 741
RsaNI GTAC 4 cut(s) 229, 576, 727, 740
RseI CAYNNNNRTG 2 cut(s) 120, 791
SacI GAGCTC 1 cut(s) 204
SapI GCTCTTC 3 cut(s) 60, 336, 355
SatI GCNGC 2 cut(s) 150, 408
Sau3AI GATC 9 cut(s) 22, 141, 175, 244, 253, 400, 480, 567, 625
Sau96I GGNCC 1 cut(s) 81
ScaI AGTACT 2 cut(s) 577, 728
SchI GAGTC 2 cut(s) 203, 771
ScrFI CCNGG 1 cut(s) 110
SduI GDGCHC 1 cut(s) 204
SfaNI GCATC 6 cut(s) 14, 34, 250, 514, 695, 769
SfuI TTCGAA 1 cut(s) 58
SinI GGWCC 1 cut(s) 81
SmiMI CAYNNNNRTG 2 cut(s) 120, 791
SmlI CTYRAG 3 cut(s) 182, 191, 820
SmoI CTYRAG 3 cut(s) 182, 191, 820
Sse9I AATT 6 cut(s) 26, 312, 318, 499, 558, 649
SseBI AGGCCT 2 cut(s) 65, 908
SsiI CCGC 3 cut(s) 232, 430, 463
SspMI CTAG 3 cut(s) 350, 404, 579
SstI GAGCTC 1 cut(s) 204
StuI AGGCCT 2 cut(s) 65, 908
StyD4I CCNGG 1 cut(s) 108
TaaI ACNGT 1 cut(s) 473
TaqI TCGA 2 cut(s) 58, 703
TasI AATT 6 cut(s) 26, 312, 318, 499, 558, 649
TatI WGTACW 2 cut(s) 575, 726
TscAI CASTG 2 cut(s) 231, 301
TseFI GTSAC 2 cut(s) 451, 473
TseI GCWGC 2 cut(s) 149, 407
Tsp45I GTSAC 2 cut(s) 451, 473
TspDTI ATGAA 1 cut(s) 171
TspRI CASTG 2 cut(s) 231, 301
VpaK11BI GGWCC 1 cut(s) 81
XapI RAATTY 3 cut(s) 318, 499, 649
XmnI GAANNNNTTC 2 cut(s) 177, 345
XspI CTAG 3 cut(s) 350, 404, 579
ZrmI AGTACT 2 cut(s) 577, 728
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.