Rw1G004080

Annexin-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr1
OG0001318
Physical Location & Seq
Forward (+)
7645557 .. 7647423
1867 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw1G004080.1

Sequence Viewer

Length: 873 bp
ATGGCTACCCTTGTTTCTCCTCCAAATTTCTCAGCCAATGAAGATGCAGAAGCTCTTCGAATATCTGTTAAAGGTTGGGGGACTAATGAGAAGGCTATCATCTCCATCCTGGGTCATAGAAATGCAGGTCAAAGAAAAGAGATCAGGGCAGCTTATGAACAACTTTATCAAGAAGATCTAATCAAGGGCCTTGAGTCTGAGCTCTCTGGAGATTTTGAGAGAGCGGTGTACCGGTGGATATTGGATCCAGCAGATCGTGATGCAGTTTTGGCTAATGTGGCCATCAAGAAATCCAACACTGACTACAATGTCATCATAGAAATGTCCTGCGTTCACTCTCCTGAAGAGCTCCTAGCTGTAAGAAGAGCTTACCAGCTTCGCTACAAGCACTCGTTGGAAGAAGATCTAGCTGCACATACCACCGGTGATATGCGCAAGCTTTTGGTTGCTTTGGTGACTGCTTACCGTTATGACGGTAACGAGATCAATGCAAAGTTGGCAAATTCAGAAGCTTTCAATCATGAAGAAATTATCAGGATCCTGAGTACAAGGAGCAAGACACAGCTCATGGCTACATTCAACAAATACAGAGATGATCAGGGCATTTCTATCAGCAAGGCTTTGTTGGATGAGGAAGCTAATGATTTCCAGAAGGCATTGCACACAGCCATTCGATGCCTCAATGACCCCAAGAAGTACTTTGAGAAGGATGCTCTCACTCGTGTAATTGTTACAAGGGCAGAGAGGGACTTGAGGGACATCAAGGAGGTTTACTACAAGAAGAACAGTGTTCCTCTTGAACAGGCTGTGGCCAAAGACACTTCAGGGGACTATAAGGCCTTCCTCCTTACTCTGTTGGGAAAGGAAGATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Annexin

Protein Analysis

290

Amino Acids

32.95

Weight (kDa)

5.96

Isoelectric Point (pI)

34.76

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Annexin PF00191 15 - 76 8.9e-22 Annexin
Annexin PF00191 87 - 151 7.4e-15 Annexin
Annexin PF00191 173 - 221 2.6e-08 Annexin
Annexin PF00191 235 - 285 3.6e-11 Annexin
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 308
Acc16I TGCGCA 1 cut(s) 434
Acc36I ACCTGC 1 cut(s) 116
AccBSI CCGCTC 1 cut(s) 224
AciI CCGC 1 cut(s) 224
AclWI GGATC 4 cut(s) 239, 252, 532, 545
AcoI YGGCCR 2 cut(s) 279, 810
AcsI RAATTY 2 cut(s) 25, 502
AcuI CTGAAG 2 cut(s) 363, 807
AfaI GTAC 3 cut(s) 230, 547, 698
AgeI ACCGGT 2 cut(s) 231, 422
AgsI TTSAA 3 cut(s) 517, 580, 800
AjnI CCWGG 1 cut(s) 108
Alw21I GWGCWC 2 cut(s) 204, 351
AlwI GGATC 4 cut(s) 239, 252, 532, 545
AoxI GGCC 4 cut(s) 187, 279, 810, 837
ApeKI GCWGC 2 cut(s) 149, 410
ApoI RAATTY 2 cut(s) 25, 502
AsiGI ACCGGT 2 cut(s) 231, 422
Asp700I GAANNNNTTC 1 cut(s) 54
AspLEI GCGC 1 cut(s) 435
AspS9I GGNCC 1 cut(s) 187
AsuHPI GGTGA 2 cut(s) 437, 466
AsuII TTCGAA 1 cut(s) 58
BalI TGGCCA 2 cut(s) 281, 812
BamHI GGATCC 2 cut(s) 244, 537
BanII GRGCYC 2 cut(s) 204, 351
BauI CACGAG 1 cut(s) 720
Bbv12I GWGCWC 2 cut(s) 204, 351
BbvI GCAGC 2 cut(s) 161, 397
BccI CCATC 2 cut(s) 113, 290
BcgI CGANNNNNNTGC 2 cut(s) 470, 504
BciT130I CCWGG 1 cut(s) 110
BclI TGATCA 1 cut(s) 595
BfaI CTAG 2 cut(s) 353, 407
BfuAI ACCTGC 1 cut(s) 116
BglII AGATCT 2 cut(s) 175, 403
BisI GCNGC 2 cut(s) 150, 411
BlsI GCNGC 2 cut(s) 151, 412
BmcAI AGTACT 1 cut(s) 698
Bme1390I CCNGG 1 cut(s) 110
BmgT120I GGNCC 1 cut(s) 187
BmiI GGNNCC 2 cut(s) 246, 539
BmrFI CCNGG 1 cut(s) 110
BmsI GCATC 4 cut(s) 34, 250, 665, 700
BpmI CTGGAG 1 cut(s) 228
Bpu14I TTCGAA 1 cut(s) 58
BpuEI CTTGAG 2 cut(s) 212, 772
BsaJI CCNNGG 1 cut(s) 109
BsaWI WCCGGW 2 cut(s) 231, 422
Bse118I RCCGGY 2 cut(s) 231, 422
Bse3DI GCAATG 1 cut(s) 656
BseBI CCWGG 1 cut(s) 110
BseDI CCNNGG 1 cut(s) 109
BseGI GGATG 3 cut(s) 105, 634, 715
BseMI GCAATG 1 cut(s) 656
BseMII CTCAG 3 cut(s) 45, 189, 533
BseRI GAGGAG 1 cut(s) 9
BseXI GCAGC 2 cut(s) 161, 397
BsgI GTGCAG 1 cut(s) 396
BshFI GGCC 4 cut(s) 189, 281, 812, 839
BshTI ACCGGT 2 cut(s) 231, 422
BsiHKAI GWGCWC 2 cut(s) 204, 351
BsiSI CCGG 2 cut(s) 232, 423
BslFI GGGAC 4 cut(s) 94, 761, 770, 842
BsmFI GGGAC 4 cut(s) 94, 761, 770, 842
BsnI GGCC 4 cut(s) 189, 281, 812, 839
Bsp119I TTCGAA 1 cut(s) 58
Bsp1286I GDGCHC 2 cut(s) 204, 351
Bsp143I GATC 8 cut(s) 141, 175, 244, 253, 403, 483, 537, 595
BspACI CCGC 1 cut(s) 224
BspANI GGCC 4 cut(s) 189, 281, 812, 839
BspCNI CTCAG 3 cut(s) 44, 190, 534
BspHI TCATGA 1 cut(s) 520
BspLI GGNNCC 2 cut(s) 246, 539
BspMI ACCTGC 1 cut(s) 116
BspPI GGATC 4 cut(s) 239, 252, 532, 545
BspQI GCTCTTC 3 cut(s) 60, 339, 358
BspT104I TTCGAA 1 cut(s) 58
BsrBI CCGCTC 1 cut(s) 224
BsrDI GCAATG 1 cut(s) 656
BsrFI RCCGGY 2 cut(s) 231, 422
BssAI RCCGGY 2 cut(s) 231, 422
BssECI CCNNGG 1 cut(s) 109
BssMI GATC 8 cut(s) 141, 175, 244, 253, 403, 483, 537, 595
BssSI CACGAG 1 cut(s) 720
Bst2BI CACGAG 1 cut(s) 720
Bst2UI CCWGG 1 cut(s) 110
Bst4CI ACNGT 3 cut(s) 467, 476, 788
Bst6I CTCTTC 3 cut(s) 60, 339, 358
BstBI TTCGAA 1 cut(s) 58
BstC8I GCNNGC 1 cut(s) 437
BstDEI CTNAG 3 cut(s) 31, 198, 542
BstF5I GGATG 3 cut(s) 105, 634, 715
BstHHI GCGC 1 cut(s) 435
BstKTI GATC 8 cut(s) 144, 178, 247, 256, 406, 486, 540, 598
BstMBI GATC 8 cut(s) 141, 175, 244, 253, 403, 483, 537, 595
BstMWI GCNNNNNNNGC 3 cut(s) 269, 278, 497
BstNI CCWGG 1 cut(s) 110
BstSCI CCNGG 1 cut(s) 108
BstV1I GCAGC 2 cut(s) 161, 397
BstX2I RGATCY 4 cut(s) 175, 244, 403, 537
BstYI RGATCY 4 cut(s) 175, 244, 403, 537
BsuRI GGCC 4 cut(s) 189, 281, 812, 839
BtsCI GGATG 3 cut(s) 105, 634, 715
BtsIMutI CAGTG 2 cut(s) 297, 793
BveI ACCTGC 1 cut(s) 116
Cac8I GCNNGC 1 cut(s) 437
CciI TCATGA 1 cut(s) 520
CfoI GCGC 1 cut(s) 435
Cfr10I RCCGGY 2 cut(s) 231, 422
Cfr13I GGNCC 1 cut(s) 187
Csp6I GTAC 3 cut(s) 229, 546, 697
CspAI ACCGGT 2 cut(s) 231, 422
CviAII CATG 2 cut(s) 521, 568
CviQI GTAC 3 cut(s) 229, 546, 697
DdeI CTNAG 3 cut(s) 31, 198, 542
DpnI GATC 8 cut(s) 143, 177, 246, 255, 405, 485, 539, 597
DpnII GATC 8 cut(s) 141, 175, 244, 253, 403, 483, 537, 595
DrdI GACNNNNNNGTC 1 cut(s) 308
DseDI GACNNNNNNGTC 1 cut(s) 308
EaeI YGGCCR 2 cut(s) 279, 810
Eam1104I CTCTTC 3 cut(s) 60, 339, 358
EarI CTCTTC 3 cut(s) 60, 339, 358
Ecl136II GAGCTC 2 cut(s) 202, 349
Eco147I AGGCCT 1 cut(s) 839
Eco24I GRGCYC 2 cut(s) 204, 351
Eco53kI GAGCTC 2 cut(s) 202, 349
Eco57I CTGAAG 2 cut(s) 363, 807
EcoICRI GAGCTC 2 cut(s) 202, 349
EcoO109I RGGNCCY 1 cut(s) 187
EcoRII CCWGG 1 cut(s) 108
EcoT38I GRGCYC 2 cut(s) 204, 351
FaeI CATG 2 cut(s) 524, 571
FaiI YATR 9 cut(s) 117, 156, 317, 417, 431, 471, 522, 569, 834
FalI AAGNNNNNCTT 4 cut(s) 352, 384, 683, 715
FaqI GGGAC 4 cut(s) 94, 761, 770, 842
FatI CATG 2 cut(s) 520, 567
FbaI TGATCA 1 cut(s) 595
Fnu4HI GCNGC 2 cut(s) 150, 411
FokI GGATG 3 cut(s) 92, 641, 722
FriOI GRGCYC 2 cut(s) 204, 351
Fsp4HI GCNGC 2 cut(s) 150, 411
FspBI CTAG 2 cut(s) 353, 407
FspI TGCGCA 1 cut(s) 434
GlaI GCGC 1 cut(s) 434
GluI GCNGC 2 cut(s) 150, 411
GsuI CTGGAG 1 cut(s) 228
HaeIII GGCC 4 cut(s) 189, 281, 812, 839
HapII CCGG 2 cut(s) 232, 423
HhaI GCGC 1 cut(s) 435
Hin1II CATG 2 cut(s) 524, 571
Hin6I GCGC 1 cut(s) 433
HinP1I GCGC 1 cut(s) 433
HindIII AAGCTT 2 cut(s) 437, 510
HinfI GANTC 1 cut(s) 194
HpaII CCGG 2 cut(s) 232, 423
HphI GGTGA 2 cut(s) 437, 466
Hpy166II GTNNAC 3 cut(s) 229, 334, 772
Hpy188I TCNGA 2 cut(s) 199, 508
Hpy8I GTNNAC 3 cut(s) 229, 334, 772
HpyAV CCTTC 4 cut(s) 85, 646, 700, 850
HpyCH4III ACNGT 3 cut(s) 467, 476, 788
HpyCH4V TGCA 6 cut(s) 47, 125, 263, 413, 491, 661
HpyF10VI GCNNNNNNNGC 3 cut(s) 269, 278, 497
HpyF3I CTNAG 3 cut(s) 31, 198, 542
Hsp92II CATG 2 cut(s) 524, 571
HspAI GCGC 1 cut(s) 433
Ksp22I TGATCA 1 cut(s) 595
Kzo9I GATC 8 cut(s) 141, 175, 244, 253, 403, 483, 537, 595
LguI GCTCTTC 3 cut(s) 60, 339, 358
LmnI GCTCC 2 cut(s) 354, 552
Lsp1109I GCAGC 2 cut(s) 161, 397
LweI GCATC 4 cut(s) 34, 250, 665, 700
MaeI CTAG 2 cut(s) 353, 407
MaeIII GTNAC 3 cut(s) 454, 476, 730
MalI GATC 8 cut(s) 143, 177, 246, 255, 405, 485, 539, 597
MbiI CCGCTC 1 cut(s) 224
MboI GATC 8 cut(s) 141, 175, 244, 253, 403, 483, 537, 595
MboII GAAGA 9 cut(s) 47, 53, 185, 356, 375, 410, 413, 536, 793
MflI RGATCY 4 cut(s) 175, 244, 403, 537
MhlI GDGCHC 2 cut(s) 204, 351
MlsI TGGCCA 2 cut(s) 281, 812
MluCI AATT 4 cut(s) 25, 502, 528, 726
MluNI TGGCCA 2 cut(s) 281, 812
MlyI GAGTC 1 cut(s) 203
MmeI TCCRAC 3 cut(s) 318, 375, 606
MnlI CCTC 8 cut(s) 30, 625, 689, 738, 747, 760, 804, 854
Mox20I TGGCCA 2 cut(s) 281, 812
MroXI GAANNNNTTC 1 cut(s) 54
MscI TGGCCA 2 cut(s) 281, 812
MseI TTAA 1 cut(s) 69
MslI CAYNNNNRTG 2 cut(s) 120, 320
Msp20I TGGCCA 2 cut(s) 281, 812
MspI CCGG 2 cut(s) 232, 423
MspR9I CCNGG 1 cut(s) 110
MvaI CCWGG 1 cut(s) 110
MwoI GCNNNNNNNGC 3 cut(s) 269, 278, 497
NdeII GATC 8 cut(s) 141, 175, 244, 253, 403, 483, 537, 595
NlaIII CATG 2 cut(s) 524, 571
NlaIV GGNNCC 2 cut(s) 246, 539
NmuCI GTSAC 1 cut(s) 454
NsbI TGCGCA 1 cut(s) 434
NspV TTCGAA 1 cut(s) 58
PagI TCATGA 1 cut(s) 520
PceI AGGCCT 1 cut(s) 839
PciSI GCTCTTC 3 cut(s) 60, 339, 358
PdmI GAANNNNTTC 1 cut(s) 54
PinAI ACCGGT 2 cut(s) 231, 422
PkrI GCNGC 2 cut(s) 151, 412
PleI GAGTC 1 cut(s) 202
PpsI GAGTC 1 cut(s) 202
Psp124BI GAGCTC 2 cut(s) 204, 351
Psp6I CCWGG 1 cut(s) 108
PspGI CCWGG 1 cut(s) 108
PspN4I GGNNCC 2 cut(s) 246, 539
PspPI GGNCC 1 cut(s) 187
PsuI RGATCY 4 cut(s) 175, 244, 403, 537
RsaI GTAC 3 cut(s) 230, 547, 698
RsaNI GTAC 3 cut(s) 229, 546, 697
RseI CAYNNNNRTG 2 cut(s) 120, 320
SacI GAGCTC 2 cut(s) 204, 351
SapI GCTCTTC 3 cut(s) 60, 339, 358
SaqAI TTAA 1 cut(s) 69
SatI GCNGC 2 cut(s) 150, 411
Sau3AI GATC 8 cut(s) 141, 175, 244, 253, 403, 483, 537, 595
Sau96I GGNCC 1 cut(s) 187
ScaI AGTACT 1 cut(s) 698
SchI GAGTC 1 cut(s) 203
ScrFI CCNGG 1 cut(s) 110
SduI GDGCHC 2 cut(s) 204, 351
SfaNI GCATC 4 cut(s) 34, 250, 665, 700
SfuI TTCGAA 1 cut(s) 58
SgrAI CRCCGGYG 1 cut(s) 422
SmiMI CAYNNNNRTG 2 cut(s) 120, 320
SmlI CTYRAG 2 cut(s) 191, 751
SmoI CTYRAG 2 cut(s) 191, 751
Sse9I AATT 4 cut(s) 25, 502, 528, 726
SseBI AGGCCT 1 cut(s) 839
SsiI CCGC 1 cut(s) 224
SspMI CTAG 2 cut(s) 353, 407
SstI GAGCTC 2 cut(s) 204, 351
StuI AGGCCT 1 cut(s) 839
StyD4I CCNGG 1 cut(s) 108
TaaI ACNGT 3 cut(s) 467, 476, 788
TaqI TCGA 2 cut(s) 58, 673
TasI AATT 4 cut(s) 25, 502, 528, 726
TatI WGTACW 2 cut(s) 545, 696
Tru1I TTAA 1 cut(s) 69
Tru9I TTAA 1 cut(s) 69
TscAI CASTG 2 cut(s) 304, 793
TseFI GTSAC 1 cut(s) 454
TseI GCWGC 2 cut(s) 149, 410
Tsp45I GTSAC 1 cut(s) 454
TspDTI ATGAA 3 cut(s) 54, 171, 537
TspRI CASTG 2 cut(s) 304, 793
XapI RAATTY 2 cut(s) 25, 502
XmnI GAANNNNTTC 1 cut(s) 54
XspI CTAG 2 cut(s) 353, 407
ZrmI AGTACT 1 cut(s) 698
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.