Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000724.1

Orthogroup ID

OG0001318

Physical Location & Seq

Genomic Coordinates Reverse (-)

114705 .. 117746

Gene Structure 3042 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000724.1_g000024.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 855 bp

atggcatcccttattactccagatcagttctctgctaaccaagatgccgaggctctgcgaaaggcgtgtcaagggtgggggactaatgagaaggtcatcatctccatactgggtcatagaagtgcaactcaaagaaatgaaatcagggtcgcttatgaacaactttatcaagaagatcttctcaagcgccttgaatctgagctctctggtgattttgagagagcggtgtaccgttggacattggatccagctgatcgtgatgctgttttggctaatctggccattaagaaacctgatgagactgactacaatgtcatcatcgaaatctccagtgttcggtgtcctgaagagcttctagctgtaagaaaagcttaccagcttcgctacaggtgctccttggaagaagatctagctcaacacaccgctggtgatatccgcaagcttttggttgctttggtgactgcttaccgttatgacggtaatgagatcaatgaaaagttggcaagttcagaagctaatattcttcacgatgcaatcaaagagaagtgttttaatcatgaagaaattattaggatcctgagtacaaggagtaagacacagctcatggctacattcaacaaatacagagatgaccatggcagttctatcagcaaggtactacgcaatgccatcatagggacagggaccgatgagaatgctctcactcgggtgattgttacaagggcagagagggacttgagggacatcatggtggtttactacaagaagaacagtgttcctcttgaacaggctgtggcccaagaaacttcaggggactacaaaactttcctccttactctgttgggaaagaactaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Annexin

Protein Analysis

284

Amino Acids

32.27

Weight (kDa)

5.85

Isoelectric Point (pI)

34.87

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001318)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G12380
fragaria_vesca	FvH4_7g02680 FvH4_7g02680
malus_domestica	MD02G1291000.v1.1 MD07G1035500.v1.1 MD07G1036200.v1.1 MD07G1036300.v1.1
prunus_persica	Prupe.2G031900_v2.0.a1 Prupe.2G031900_v2.0.a1
pyrus_communis	pycom02g24600 pycom07g02490 pycom07g02500
rosa_chinensis	RchiOBHm_Chr1g0321371 RchiOBHm_Chr1g0321531 RchiOBHm_Chr1g0321551 RchiOBHm_Chr1g0321701
rosa_laevigata	RLG00000030411 RLG00000030414 RLG00000030418
rosa_multiflora	Rmu_sc0000087.1_g000010 Rmu_sc0000087.1_g000013 Rmu_sc0000196.1_g000001 Rmu_sc0000724.1_g000024 Rmu_sc0000724.1_g000032 Rmu_sc0000960.1_g000004 Rmu_sc0003410.1_g000041 Rmu_sc0003410.1_g000044 Rmu_sc0025973.1_g000001
rosa_roxburghii	Rroxscaffold_160G00434000 Rroxscaffold_4G00327530 Rroxscaffold_4G00327560 Rroxscaffold_4G00327790
rosa_rugosa	Rorug01G0033300 Rorug01G0033500 Rorug01G0033600 Rorug01G0033700
rosa_samantha	Rh1AG044600 Rh1AG045100 Rh1AG045200 Rh1AG045600 Rh1AG046300 Rh1BG042300 Rh1BG043600 Rh1BG044800 Rh1CG047200 Rh1DG052300 Rh1DG052400 Rh1DG052800 Rh1DG054800
rosa_wichuraiana	Rw1G003980 Rw1G004000 Rw1G004080 Rw1G004120 Rw1G004140

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	311
AccBSI	CCGCTC	1 cut(s)	224
AciI	CCGC	3 cut(s)	224, 423, 436
AclWI	GGATC	4 cut(s)	239, 252, 568, 581
AcoI	YGGCCR	1 cut(s)	279
AcuI	CTGAAG	2 cut(s)	366, 792
AfaI	GTAC	3 cut(s)	230, 583, 657
AfiI	CCNNNNNNNGG	2 cut(s)	336, 675
AgsI	TTSAA	3 cut(s)	194, 616, 785
AleI	CACNNNNGTG	1 cut(s)	707
Alw21I	GWGCWC	2 cut(s)	204, 395
Alw26I	GTCTC	1 cut(s)	293
AlwI	GGATC	4 cut(s)	239, 252, 568, 581
Ama87I	CYCGRG	1 cut(s)	705
AoxI	GGCC	2 cut(s)	279, 795
ArsI	GACNNNNNNTTYG	2 cut(s)	52, 84
Asp700I	GAANNNNTTC	2 cut(s)	177, 351
AspLEI	GCGC	1 cut(s)	189
AspS9I	GGNCC	2 cut(s)	684, 796
AsuHPI	GGTGA	4 cut(s)	221, 440, 469, 721
AvaI	CYCGRG	1 cut(s)	705
AvaII	GGWCC	1 cut(s)	684
BalI	TGGCCA	1 cut(s)	281
BamHI	GGATCC	2 cut(s)	244, 573
BanII	GRGCYC	1 cut(s)	204
Bbv12I	GWGCWC	2 cut(s)	204, 395
BccI	CCATC	1 cut(s)	677
BcgI	CGANNNNNNTGC	2 cut(s)	677, 711
BcoDI	GTCTC	1 cut(s)	293
BfaI	CTAG	2 cut(s)	356, 410
BfmI	CTRYAG	1 cut(s)	385
BfoI	RGCGCY	1 cut(s)	190
BglII	AGATCT	2 cut(s)	175, 406
Bme18I	GGWCC	1 cut(s)	684
BmeT110I	CYCGRG	1 cut(s)	705
BmgT120I	GGNCC	2 cut(s)	684, 796
BmiI	GGNNCC	3 cut(s)	246, 575, 685
BmrI	ACTGGG	1 cut(s)	119
BmsI	GCATC	4 cut(s)	14, 34, 250, 520
BmuI	ACTGGG	1 cut(s)	119
BpmI	CTGGAG	1 cut(s)	313
BpuEI	CTTGAG	2 cut(s)	167, 757
BsaJI	CCNNGG	3 cut(s)	48, 396, 634
BsaXI	ACNNNNNCTCC	2 cut(s)	377, 407
Bsc4I	CCNNNNNNNGG	2 cut(s)	336, 675
Bse1I	ACTGG	2 cut(s)	114, 330
Bse3DI	GCAATG	1 cut(s)	670
BseDI	CCNNGG	3 cut(s)	48, 396, 634
BseGI	GGATG	1 cut(s)	5
BseLI	CCNNNNNNNGG	2 cut(s)	336, 675
BseMI	GCAATG	1 cut(s)	670
BseMII	CTCAG	2 cut(s)	189, 569
BseNI	ACTGG	2 cut(s)	114, 330
BshFI	GGCC	2 cut(s)	281, 797
BsiHKAI	GWGCWC	2 cut(s)	204, 395
BsiHKCI	CYCGRG	1 cut(s)	705
BslFI	GGGAC	6 cut(s)	94, 691, 697, 746, 755, 827
BslI	CCNNNNNNNGG	2 cut(s)	336, 675
BsmAI	GTCTC	1 cut(s)	293
BsmFI	GGGAC	6 cut(s)	94, 691, 697, 746, 755, 827
BsmI	GAATGC	1 cut(s)	700
BsnI	GGCC	2 cut(s)	281, 797
BsoBI	CYCGRG	1 cut(s)	705
Bsp1286I	GDGCHC	2 cut(s)	204, 395
Bsp143I	GATC	7 cut(s)	22, 175, 244, 253, 406, 486, 573
Bsp19I	CCATGG	1 cut(s)	634
BspACI	CCGC	3 cut(s)	224, 423, 436
BspANI	GGCC	2 cut(s)	281, 797
BspCNI	CTCAG	2 cut(s)	190, 570
BspHI	TCATGA	1 cut(s)	556
BspLI	GGNNCC	3 cut(s)	246, 575, 685
BspPI	GGATC	4 cut(s)	239, 252, 568, 581
BspQI	GCTCTTC	1 cut(s)	342
BsrBI	CCGCTC	1 cut(s)	224
BsrDI	GCAATG	1 cut(s)	670
BsrI	ACTGG	2 cut(s)	114, 330
BssECI	CCNNGG	3 cut(s)	48, 396, 634
BssMI	GATC	7 cut(s)	22, 175, 244, 253, 406, 486, 573
BssT1I	CCWWGG	2 cut(s)	396, 634
Bst4CI	ACNGT	4 cut(s)	233, 470, 479, 773
Bst6I	CTCTTC	1 cut(s)	342
BstC8I	GCNNGC	1 cut(s)	440
BstDEI	CTNAG	2 cut(s)	198, 578
BstDSI	CCRYGG	1 cut(s)	634
BstF5I	GGATG	1 cut(s)	5
BstH2I	RGCGCY	1 cut(s)	190
BstHHI	GCGC	1 cut(s)	189
BstKTI	GATC	7 cut(s)	25, 178, 247, 256, 409, 489, 576
BstMAI	GTCTC	1 cut(s)	293
BstMBI	GATC	7 cut(s)	22, 175, 244, 253, 406, 486, 573
BstMWI	GCNNNNNNNGC	3 cut(s)	269, 278, 390
BstSFI	CTRYAG	1 cut(s)	385
BstX2I	RGATCY	4 cut(s)	175, 244, 406, 573
BstYI	RGATCY	4 cut(s)	175, 244, 406, 573
BsuRI	GGCC	2 cut(s)	281, 797
BtgI	CCRYGG	1 cut(s)	634
BtsCI	GGATG	1 cut(s)	5
BtsIMutI	CAGTG	2 cut(s)	337, 778
Cac8I	GCNNGC	1 cut(s)	440
CciI	TCATGA	1 cut(s)	556
CfoI	GCGC	1 cut(s)	189
Cfr13I	GGNCC	2 cut(s)	684, 796
Csp6I	GTAC	3 cut(s)	229, 582, 656
CviAII	CATG	4 cut(s)	557, 604, 635, 748
CviQI	GTAC	3 cut(s)	229, 582, 656
DdeI	CTNAG	2 cut(s)	198, 578
DpnI	GATC	7 cut(s)	24, 177, 246, 255, 408, 488, 575
DpnII	GATC	7 cut(s)	22, 175, 244, 253, 406, 486, 573
DrdI	GACNNNNNNGTC	1 cut(s)	311
DseDI	GACNNNNNNGTC	1 cut(s)	311
EaeI	YGGCCR	1 cut(s)	279
Eam1104I	CTCTTC	1 cut(s)	342
EarI	CTCTTC	1 cut(s)	342
Ecl136II	GAGCTC	1 cut(s)	202
Eco130I	CCWWGG	2 cut(s)	396, 634
Eco24I	GRGCYC	1 cut(s)	204
Eco32I	GATATC	1 cut(s)	433
Eco47I	GGWCC	1 cut(s)	684
Eco53kI	GAGCTC	1 cut(s)	202
Eco57I	CTGAAG	2 cut(s)	366, 792
Eco88I	CYCGRG	1 cut(s)	705
EcoICRI	GAGCTC	1 cut(s)	202
EcoRV	GATATC	1 cut(s)	433
EcoT14I	CCWWGG	2 cut(s)	396, 634
EcoT38I	GRGCYC	1 cut(s)	204
ErhI	CCWWGG	2 cut(s)	396, 634
FaeI	CATG	4 cut(s)	560, 607, 638, 751
FaiI	YATR	9 cut(s)	107, 117, 156, 474, 558, 605, 636, 674, 749
FalI	AAGNNNNNCTT	4 cut(s)	162, 194, 355, 387
FaqI	GGGAC	6 cut(s)	94, 691, 697, 746, 755, 827
FatI	CATG	4 cut(s)	556, 603, 634, 747
FriOI	GRGCYC	1 cut(s)	204
FspBI	CTAG	2 cut(s)	356, 410
GlaI	GCGC	1 cut(s)	188
GsuI	CTGGAG	1 cut(s)	313
HaeII	RGCGCY	1 cut(s)	190
HaeIII	GGCC	2 cut(s)	281, 797
HhaI	GCGC	1 cut(s)	189
Hin1II	CATG	4 cut(s)	560, 607, 638, 751
Hin6I	GCGC	1 cut(s)	187
HinP1I	GCGC	1 cut(s)	187
HindIII	AAGCTT	2 cut(s)	369, 440
HinfI	GANTC	1 cut(s)	194
HphI	GGTGA	4 cut(s)	221, 440, 469, 721
Hpy166II	GTNNAC	2 cut(s)	229, 757
Hpy188I	TCNGA	2 cut(s)	199, 511
Hpy188III	TCNNGA	8 cut(s)	20, 170, 257, 344, 527, 557, 577, 782
Hpy8I	GTNNAC	2 cut(s)	229, 757
HpyAV	CCTTC	1 cut(s)	85
HpyCH4III	ACNGT	4 cut(s)	233, 470, 479, 773
HpyCH4V	TGCA	2 cut(s)	125, 533
HpyF10VI	GCNNNNNNNGC	3 cut(s)	269, 278, 390
HpyF3I	CTNAG	2 cut(s)	198, 578
Hsp92II	CATG	4 cut(s)	560, 607, 638, 751
HspAI	GCGC	1 cut(s)	187
Kzo9I	GATC	7 cut(s)	22, 175, 244, 253, 406, 486, 573
LguI	GCTCTTC	1 cut(s)	342
LmnI	GCTCC	1 cut(s)	398
LweI	GCATC	4 cut(s)	14, 34, 250, 520
MaeI	CTAG	2 cut(s)	356, 410
MaeIII	GTNAC	2 cut(s)	457, 715
MalI	GATC	7 cut(s)	24, 177, 246, 255, 408, 488, 575
MbiI	CCGCTC	1 cut(s)	224
MboI	GATC	7 cut(s)	22, 175, 244, 253, 406, 486, 573
MboII	GAAGA	8 cut(s)	170, 185, 359, 413, 416, 515, 572, 778
MflI	RGATCY	4 cut(s)	175, 244, 406, 573
MhlI	GDGCHC	2 cut(s)	204, 395
MlsI	TGGCCA	1 cut(s)	281
MluCI	AATT	1 cut(s)	564
MluNI	TGGCCA	1 cut(s)	281
MmeI	TCCRAC	1 cut(s)	215
MnlI	CCTC	5 cut(s)	43, 723, 732, 789, 839
Mox20I	TGGCCA	1 cut(s)	281
MroXI	GAANNNNTTC	2 cut(s)	177, 351
MscI	TGGCCA	1 cut(s)	281
MseI	TTAA	2 cut(s)	285, 552
MslI	CAYNNNNRTG	3 cut(s)	120, 707, 749
Msp20I	TGGCCA	1 cut(s)	281
MspA1I	CMGCKG	2 cut(s)	251, 425
Mva1269I	GAATGC	1 cut(s)	700
MwoI	GCNNNNNNNGC	3 cut(s)	269, 278, 390
NcoI	CCATGG	1 cut(s)	634
NdeII	GATC	7 cut(s)	22, 175, 244, 253, 406, 486, 573
NlaIII	CATG	4 cut(s)	560, 607, 638, 751
NlaIV	GGNNCC	3 cut(s)	246, 575, 685
NmeAIII	GCCGAG	1 cut(s)	73
NmuCI	GTSAC	1 cut(s)	457
OliI	CACNNNNGTG	1 cut(s)	707
PagI	TCATGA	1 cut(s)	556
PciSI	GCTCTTC	1 cut(s)	342
PctI	GAATGC	1 cut(s)	700
PdmI	GAANNNNTTC	2 cut(s)	177, 351
PfeI	GAWTC	1 cut(s)	194
Psp124BI	GAGCTC	1 cut(s)	204
PspN4I	GGNNCC	3 cut(s)	246, 575, 685
PspPI	GGNCC	2 cut(s)	684, 796
PsuI	RGATCY	4 cut(s)	175, 244, 406, 573
PvuII	CAGCTG	1 cut(s)	251
RsaI	GTAC	3 cut(s)	230, 583, 657
RsaNI	GTAC	3 cut(s)	229, 582, 656
RseI	CAYNNNNRTG	3 cut(s)	120, 707, 749
SacI	GAGCTC	1 cut(s)	204
SapI	GCTCTTC	1 cut(s)	342
SaqAI	TTAA	2 cut(s)	285, 552
Sau3AI	GATC	7 cut(s)	22, 175, 244, 253, 406, 486, 573
Sau96I	GGNCC	2 cut(s)	684, 796
SduI	GDGCHC	2 cut(s)	204, 395
SfaNI	GCATC	4 cut(s)	14, 34, 250, 520
SfcI	CTRYAG	1 cut(s)	385
SinI	GGWCC	1 cut(s)	684
SmiMI	CAYNNNNRTG	3 cut(s)	120, 707, 749
SmlI	CTYRAG	2 cut(s)	182, 736
SmoI	CTYRAG	2 cut(s)	182, 736
Sse9I	AATT	1 cut(s)	564
SsiI	CCGC	3 cut(s)	224, 423, 436
SspI	AATATT	1 cut(s)	520
SspMI	CTAG	2 cut(s)	356, 410
SstI	GAGCTC	1 cut(s)	204
StyI	CCWWGG	2 cut(s)	396, 634
TaaI	ACNGT	4 cut(s)	233, 470, 479, 773
TaqI	TCGA	1 cut(s)	321
TaqII	GACCGA	1 cut(s)	701
TasI	AATT	1 cut(s)	564
TatI	WGTACW	1 cut(s)	581
TfiI	GAWTC	1 cut(s)	194
Tru1I	TTAA	2 cut(s)	285, 552
Tru9I	TTAA	2 cut(s)	285, 552
TscAI	CASTG	2 cut(s)	337, 778
TseFI	GTSAC	1 cut(s)	457
Tsp45I	GTSAC	1 cut(s)	457
TspDTI	ATGAA	4 cut(s)	153, 171, 507, 573
TspRI	CASTG	2 cut(s)	337, 778
VpaK11BI	GGWCC	1 cut(s)	684
XmnI	GAANNNNTTC	2 cut(s)	177, 351
XspI	CTAG	2 cut(s)	356, 410

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.