Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0003410.1

Orthogroup ID

OG0001318

Physical Location & Seq

Genomic Coordinates Forward (+)

208958 .. 211771

Gene Structure 2814 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0003410.1_g000041.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 924 bp

atggcgtccctcattactcctgatcaattttctgctaaccaagatgcagagctctccgaaaggcgtgtcaaggttgggggactaatgagaaggctatcatctccatcctgggtcatagaaatgcaggtcaaagaaaagagatcagggcagcttaattatgaacaactttatcaagaagatctaatcaagcgccttgagtctgagctctctggggattttgagagagcggtgtaccgttggatattggatccagcagatcgtgatgcagttttggctaatgtggccatcaagaaatccaacactgactacaatgtcatcatagaaatgtcctgcgttcactctcctgaagagctcctagctgtaagaagagcttaccagcttcgctacaagcactcgttggaagaagatctagctgcacatgccaccggtgatatgcgcaagcttttggttgctttggtgactgcttaccgttatgacggtaacgagatcaatgcaaagttggcaaattcagaagctgatattcttcatgatgctatcaaagacaaggctttcaatcatgaagaaattatcaggatcctgagtaccaggagcaagacacagctcatggctacattcaacaaatacagagatgatcagggcattactatcagcaaggaagctaatgatttccagaaggcattgcacacagccattcgatgcctcaatgaccccaagaagtactttgagaaggtacttcgcaatgcaatcaaaactcttgggaccgatgaggatgctctcactcgtgtaattgttacaagggcagagagggacttgagggacatcaaggaggtttactacaacaagaacagtgttcctcttgaacaggctgtggccaaagacacttcaggggactataaggccttcctccttactctgttgggatag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Annexin

Protein Analysis

307

Amino Acids

35.12

Weight (kDa)

6.35

Isoelectric Point (pI)

41.06

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001318)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G12380
fragaria_vesca	FvH4_7g02680 FvH4_7g02680
malus_domestica	MD02G1291000.v1.1 MD07G1035500.v1.1 MD07G1036200.v1.1 MD07G1036300.v1.1
prunus_persica	Prupe.2G031900_v2.0.a1 Prupe.2G031900_v2.0.a1
pyrus_communis	pycom02g24600 pycom07g02490 pycom07g02500
rosa_chinensis	RchiOBHm_Chr1g0321371 RchiOBHm_Chr1g0321531 RchiOBHm_Chr1g0321551 RchiOBHm_Chr1g0321701
rosa_laevigata	RLG00000030411 RLG00000030414 RLG00000030418
rosa_multiflora	Rmu_sc0000087.1_g000010 Rmu_sc0000087.1_g000013 Rmu_sc0000196.1_g000001 Rmu_sc0000724.1_g000024 Rmu_sc0000724.1_g000032 Rmu_sc0000960.1_g000004 Rmu_sc0003410.1_g000041 Rmu_sc0003410.1_g000044 Rmu_sc0025973.1_g000001
rosa_roxburghii	Rroxscaffold_160G00434000 Rroxscaffold_4G00327530 Rroxscaffold_4G00327560 Rroxscaffold_4G00327790
rosa_rugosa	Rorug01G0033300 Rorug01G0033500 Rorug01G0033600 Rorug01G0033700
rosa_samantha	Rh1AG044600 Rh1AG045100 Rh1AG045200 Rh1AG045600 Rh1AG046300 Rh1BG042300 Rh1BG043600 Rh1BG044800 Rh1CG047200 Rh1DG052300 Rh1DG052400 Rh1DG052800 Rh1DG054800
rosa_wichuraiana	Rw1G003980 Rw1G004000 Rw1G004080 Rw1G004120 Rw1G004140

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	311
Acc16I	TGCGCA	1 cut(s)	437
Acc36I	ACCTGC	1 cut(s)	115
AccBSI	CCGCTC	1 cut(s)	227
AciI	CCGC	1 cut(s)	227
AclWI	GGATC	4 cut(s)	242, 255, 568, 581
AcoI	YGGCCR	2 cut(s)	282, 870
AcsI	RAATTY	1 cut(s)	505
AcuI	CTGAAG	2 cut(s)	366, 867
AcyI	GRCGYC	1 cut(s)	5
AfaI	GTAC	4 cut(s)	233, 583, 719, 732
AgeI	ACCGGT	1 cut(s)	425
AgsI	TTSAA	3 cut(s)	553, 616, 860
AjnI	CCWGG	2 cut(s)	107, 584
Alw21I	GWGCWC	3 cut(s)	54, 207, 354
AlwI	GGATC	4 cut(s)	242, 255, 568, 581
AlwNI	CAGNNNCTG	1 cut(s)	515
AoxI	GGCC	3 cut(s)	282, 870, 897
ApeKI	GCWGC	2 cut(s)	148, 413
ApoI	RAATTY	1 cut(s)	505
ArsI	GACNNNNNNTTYG	2 cut(s)	51, 83
AsiGI	ACCGGT	1 cut(s)	425
AspLEI	GCGC	2 cut(s)	192, 438
AspS9I	GGNCC	1 cut(s)	759
AsuHPI	GGTGA	2 cut(s)	440, 469
AvaII	GGWCC	1 cut(s)	759
BalI	TGGCCA	2 cut(s)	284, 872
BamHI	GGATCC	2 cut(s)	247, 573
BanII	GRGCYC	3 cut(s)	54, 207, 354
BauI	CACGAG	1 cut(s)	780
Bbv12I	GWGCWC	3 cut(s)	54, 207, 354
BbvI	GCAGC	2 cut(s)	160, 400
BccI	CCATC	2 cut(s)	112, 293
BcgI	CGANNNNNNTGC	4 cut(s)	473, 507, 752, 786
BciT130I	CCWGG	2 cut(s)	109, 586
BclI	TGATCA	2 cut(s)	22, 631
BfaI	CTAG	2 cut(s)	356, 410
BfoI	RGCGCY	1 cut(s)	193
BfuAI	ACCTGC	1 cut(s)	115
BglII	AGATCT	2 cut(s)	178, 406
BisI	GCNGC	2 cut(s)	149, 414
BlsI	GCNGC	2 cut(s)	150, 415
BmcAI	AGTACT	1 cut(s)	719
Bme1390I	CCNGG	2 cut(s)	109, 586
Bme18I	GGWCC	1 cut(s)	759
BmgT120I	GGNCC	1 cut(s)	759
BmiI	GGNNCC	3 cut(s)	249, 575, 760
BmrFI	CCNGG	2 cut(s)	109, 586
BmsI	GCATC	5 cut(s)	34, 253, 520, 686, 760
BpuEI	CTTGAG	2 cut(s)	215, 832
BsaHI	GRCGYC	1 cut(s)	5
BsaJI	CCNNGG	1 cut(s)	108
BsaWI	WCCGGW	1 cut(s)	425
Bse118I	RCCGGY	1 cut(s)	425
Bse3DI	GCAATG	2 cut(s)	677, 745
BseBI	CCWGG	2 cut(s)	109, 586
BseDI	CCNNGG	1 cut(s)	108
BseGI	GGATG	2 cut(s)	104, 775
BseMI	GCAATG	2 cut(s)	677, 745
BseMII	CTCAG	2 cut(s)	192, 569
BseXI	GCAGC	2 cut(s)	160, 400
BsgI	GTGCAG	1 cut(s)	399
BshFI	GGCC	3 cut(s)	284, 872, 899
BshTI	ACCGGT	1 cut(s)	425
BsiHKAI	GWGCWC	3 cut(s)	54, 207, 354
BsiSI	CCGG	1 cut(s)	426
BslFI	GGGAC	5 cut(s)	93, 772, 821, 830, 902
BsmFI	GGGAC	5 cut(s)	93, 772, 821, 830, 902
BsnI	GGCC	3 cut(s)	284, 872, 899
Bsp1286I	GDGCHC	3 cut(s)	54, 207, 354
Bsp143I	GATC	9 cut(s)	22, 140, 178, 247, 256, 406, 486, 573, 631
BspACI	CCGC	1 cut(s)	227
BspANI	GGCC	3 cut(s)	284, 872, 899
BspCNI	CTCAG	2 cut(s)	193, 570
BspHI	TCATGA	2 cut(s)	526, 556
BspLI	GGNNCC	3 cut(s)	249, 575, 760
BspMI	ACCTGC	1 cut(s)	115
BspPI	GGATC	4 cut(s)	242, 255, 568, 581
BspQI	GCTCTTC	2 cut(s)	342, 361
BsrBI	CCGCTC	1 cut(s)	227
BsrDI	GCAATG	2 cut(s)	677, 745
BsrFI	RCCGGY	1 cut(s)	425
BssAI	RCCGGY	1 cut(s)	425
BssECI	CCNNGG	1 cut(s)	108
BssMI	GATC	9 cut(s)	22, 140, 178, 247, 256, 406, 486, 573, 631
BssNI	GRCGYC	1 cut(s)	5
BssSI	CACGAG	1 cut(s)	780
Bst2BI	CACGAG	1 cut(s)	780
Bst2UI	CCWGG	2 cut(s)	109, 586
Bst4CI	ACNGT	4 cut(s)	236, 470, 479, 848
Bst6I	CTCTTC	2 cut(s)	342, 361
BstACI	GRCGYC	1 cut(s)	5
BstC8I	GCNNGC	1 cut(s)	440
BstDEI	CTNAG	2 cut(s)	201, 578
BstF5I	GGATG	2 cut(s)	104, 775
BstH2I	RGCGCY	1 cut(s)	193
BstHHI	GCGC	2 cut(s)	192, 438
BstKTI	GATC	9 cut(s)	25, 143, 181, 250, 259, 409, 489, 576, 634
BstMBI	GATC	9 cut(s)	22, 140, 178, 247, 256, 406, 486, 573, 631
BstMWI	GCNNNNNNNGC	4 cut(s)	272, 281, 419, 500
BstNI	CCWGG	2 cut(s)	109, 586
BstNSI	RCATGY	1 cut(s)	422
BstSCI	CCNGG	2 cut(s)	107, 584
BstV1I	GCAGC	2 cut(s)	160, 400
BstX2I	RGATCY	4 cut(s)	178, 247, 406, 573
BstYI	RGATCY	4 cut(s)	178, 247, 406, 573
BsuRI	GGCC	3 cut(s)	284, 872, 899
BtsCI	GGATG	2 cut(s)	104, 775
BtsIMutI	CAGTG	2 cut(s)	300, 853
BveI	ACCTGC	1 cut(s)	115
Cac8I	GCNNGC	1 cut(s)	440
CaiI	CAGNNNCTG	1 cut(s)	515
CciI	TCATGA	2 cut(s)	526, 556
CfoI	GCGC	2 cut(s)	192, 438
Cfr10I	RCCGGY	1 cut(s)	425
Cfr13I	GGNCC	1 cut(s)	759
Csp6I	GTAC	4 cut(s)	232, 582, 718, 731
CspAI	ACCGGT	1 cut(s)	425
CviAII	CATG	4 cut(s)	419, 527, 557, 604
CviQI	GTAC	4 cut(s)	232, 582, 718, 731
DdeI	CTNAG	2 cut(s)	201, 578
DpnI	GATC	9 cut(s)	24, 142, 180, 249, 258, 408, 488, 575, 633
DpnII	GATC	9 cut(s)	22, 140, 178, 247, 256, 406, 486, 573, 631
DrdI	GACNNNNNNGTC	1 cut(s)	311
DseDI	GACNNNNNNGTC	1 cut(s)	311
EaeI	YGGCCR	2 cut(s)	282, 870
Eam1104I	CTCTTC	2 cut(s)	342, 361
EarI	CTCTTC	2 cut(s)	342, 361
Ecl136II	GAGCTC	3 cut(s)	52, 205, 352
Eco147I	AGGCCT	1 cut(s)	899
Eco24I	GRGCYC	3 cut(s)	54, 207, 354
Eco47I	GGWCC	1 cut(s)	759
Eco53kI	GAGCTC	3 cut(s)	52, 205, 352
Eco57I	CTGAAG	2 cut(s)	366, 867
EcoICRI	GAGCTC	3 cut(s)	52, 205, 352
EcoRII	CCWGG	2 cut(s)	107, 584
EcoT38I	GRGCYC	3 cut(s)	54, 207, 354
FaeI	CATG	4 cut(s)	422, 530, 560, 607
FalI	AAGNNNNNCTT	4 cut(s)	355, 387, 704, 736
FaqI	GGGAC	5 cut(s)	93, 772, 821, 830, 902
FatI	CATG	4 cut(s)	418, 526, 556, 603
FbaI	TGATCA	2 cut(s)	22, 631
Fnu4HI	GCNGC	2 cut(s)	149, 414
FokI	GGATG	2 cut(s)	91, 782
FriOI	GRGCYC	3 cut(s)	54, 207, 354
Fsp4HI	GCNGC	2 cut(s)	149, 414
FspBI	CTAG	2 cut(s)	356, 410
FspI	TGCGCA	1 cut(s)	437
GlaI	GCGC	2 cut(s)	191, 437
GluI	GCNGC	2 cut(s)	149, 414
HaeII	RGCGCY	1 cut(s)	193
HaeIII	GGCC	3 cut(s)	284, 872, 899
HapII	CCGG	1 cut(s)	426
HhaI	GCGC	2 cut(s)	192, 438
Hin1I	GRCGYC	1 cut(s)	5
Hin1II	CATG	4 cut(s)	422, 530, 560, 607
Hin6I	GCGC	2 cut(s)	190, 436
HinP1I	GCGC	2 cut(s)	190, 436
HindIII	AAGCTT	1 cut(s)	440
HinfI	GANTC	1 cut(s)	197
HpaII	CCGG	1 cut(s)	426
HphI	GGTGA	2 cut(s)	440, 469
Hpy166II	GTNNAC	3 cut(s)	232, 337, 832
Hpy188I	TCNGA	3 cut(s)	58, 202, 511
Hpy8I	GTNNAC	3 cut(s)	232, 337, 832
HpyAV	CCTTC	4 cut(s)	84, 667, 721, 910
HpyCH4III	ACNGT	4 cut(s)	236, 470, 479, 848
HpyCH4V	TGCA	7 cut(s)	47, 124, 266, 416, 494, 682, 743
HpyF10VI	GCNNNNNNNGC	4 cut(s)	272, 281, 419, 500
HpyF3I	CTNAG	2 cut(s)	201, 578
Hsp92I	GRCGYC	1 cut(s)	5
Hsp92II	CATG	4 cut(s)	422, 530, 560, 607
HspAI	GCGC	2 cut(s)	190, 436
Ksp22I	TGATCA	2 cut(s)	22, 631
Kzo9I	GATC	9 cut(s)	22, 140, 178, 247, 256, 406, 486, 573, 631
LguI	GCTCTTC	2 cut(s)	342, 361
LmnI	GCTCC	2 cut(s)	357, 588
Lsp1109I	GCAGC	2 cut(s)	160, 400
LweI	GCATC	5 cut(s)	34, 253, 520, 686, 760
MaeI	CTAG	2 cut(s)	356, 410
MaeIII	GTNAC	3 cut(s)	457, 479, 790
MalI	GATC	9 cut(s)	24, 142, 180, 249, 258, 408, 488, 575, 633
MbiI	CCGCTC	1 cut(s)	227
MboI	GATC	9 cut(s)	22, 140, 178, 247, 256, 406, 486, 573, 631
MboII	GAAGA	7 cut(s)	188, 359, 378, 413, 416, 515, 572
MflI	RGATCY	4 cut(s)	178, 247, 406, 573
MhlI	GDGCHC	3 cut(s)	54, 207, 354
MlsI	TGGCCA	2 cut(s)	284, 872
MluCI	AATT	5 cut(s)	26, 154, 505, 564, 786
MluNI	TGGCCA	2 cut(s)	284, 872
MlyI	GAGTC	1 cut(s)	206
MmeI	TCCRAC	3 cut(s)	218, 321, 378
MnlI	CCTC	8 cut(s)	20, 710, 760, 798, 807, 820, 864, 914
Mox20I	TGGCCA	2 cut(s)	284, 872
MscI	TGGCCA	2 cut(s)	284, 872
MseI	TTAA	1 cut(s)	153
MslI	CAYNNNNRTG	2 cut(s)	119, 323
Msp20I	TGGCCA	2 cut(s)	284, 872
MspI	CCGG	1 cut(s)	426
MspR9I	CCNGG	2 cut(s)	109, 586
MvaI	CCWGG	2 cut(s)	109, 586
MwoI	GCNNNNNNNGC	4 cut(s)	272, 281, 419, 500
NdeII	GATC	9 cut(s)	22, 140, 178, 247, 256, 406, 486, 573, 631
NlaIII	CATG	4 cut(s)	422, 530, 560, 607
NlaIV	GGNNCC	3 cut(s)	249, 575, 760
NmuCI	GTSAC	1 cut(s)	457
NsbI	TGCGCA	1 cut(s)	437
NspI	RCATGY	1 cut(s)	422
PagI	TCATGA	2 cut(s)	526, 556
PceI	AGGCCT	1 cut(s)	899
PciSI	GCTCTTC	2 cut(s)	342, 361
PinAI	ACCGGT	1 cut(s)	425
PkrI	GCNGC	2 cut(s)	150, 415
PleI	GAGTC	1 cut(s)	205
PpsI	GAGTC	1 cut(s)	205
Psp124BI	GAGCTC	3 cut(s)	54, 207, 354
Psp6I	CCWGG	2 cut(s)	107, 584
PspGI	CCWGG	2 cut(s)	107, 584
PspN4I	GGNNCC	3 cut(s)	249, 575, 760
PspPI	GGNCC	1 cut(s)	759
PstNI	CAGNNNCTG	1 cut(s)	515
PsuI	RGATCY	4 cut(s)	178, 247, 406, 573
RsaI	GTAC	4 cut(s)	233, 583, 719, 732
RsaNI	GTAC	4 cut(s)	232, 582, 718, 731
RseI	CAYNNNNRTG	2 cut(s)	119, 323
SacI	GAGCTC	3 cut(s)	54, 207, 354
SapI	GCTCTTC	2 cut(s)	342, 361
SaqAI	TTAA	1 cut(s)	153
SatI	GCNGC	2 cut(s)	149, 414
Sau3AI	GATC	9 cut(s)	22, 140, 178, 247, 256, 406, 486, 573, 631
Sau96I	GGNCC	1 cut(s)	759
ScaI	AGTACT	1 cut(s)	719
SchI	GAGTC	1 cut(s)	206
ScrFI	CCNGG	2 cut(s)	109, 586
SduI	GDGCHC	3 cut(s)	54, 207, 354
SfaNI	GCATC	5 cut(s)	34, 253, 520, 686, 760
SgrAI	CRCCGGYG	1 cut(s)	425
SinI	GGWCC	1 cut(s)	759
SmiMI	CAYNNNNRTG	2 cut(s)	119, 323
SmlI	CTYRAG	2 cut(s)	194, 811
SmoI	CTYRAG	2 cut(s)	194, 811
Sse9I	AATT	5 cut(s)	26, 154, 505, 564, 786
SseBI	AGGCCT	1 cut(s)	899
SsiI	CCGC	1 cut(s)	227
SspMI	CTAG	2 cut(s)	356, 410
SstI	GAGCTC	3 cut(s)	54, 207, 354
StuI	AGGCCT	1 cut(s)	899
StyD4I	CCNGG	2 cut(s)	107, 584
TaaI	ACNGT	4 cut(s)	236, 470, 479, 848
TaqI	TCGA	1 cut(s)	694
TaqII	GACCGA	1 cut(s)	776
TasI	AATT	5 cut(s)	26, 154, 505, 564, 786
TatI	WGTACW	1 cut(s)	717
Tru1I	TTAA	1 cut(s)	153
Tru9I	TTAA	1 cut(s)	153
TscAI	CASTG	2 cut(s)	307, 853
TseFI	GTSAC	1 cut(s)	457
TseI	GCWGC	2 cut(s)	148, 413
Tsp45I	GTSAC	1 cut(s)	457
TspDTI	ATGAA	3 cut(s)	174, 515, 573
TspRI	CASTG	2 cut(s)	307, 853
VpaK11BI	GGWCC	1 cut(s)	759
XapI	RAATTY	1 cut(s)	505
XceI	RCATGY	1 cut(s)	422
XspI	CTAG	2 cut(s)	356, 410
ZrmI	AGTACT	1 cut(s)	719

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.