RchiOBHm_Chr1g0321531

Annexin-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
OG0001318
Physical Location & Seq
Reverse (-)
9062935 .. 9065381
2447 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ55157

Sequence Viewer

Length: 1035 bp
ATGGCATCCCTTATTACTCCAGATCAGTTCTCTGCTAACCAAGATGCCGAGGCTCTGCGAAAGGCGTGTCAAGGGTGGGGGACTAATGAGAAGGTCATCATCTCCATACTGAGTCATAGAAGTGCAACTCAAAGAAAAGAAATCAGGGTCGCTTATGAACAACTTTATCAAGAAGATCTTCTCAAGCGCCTTGAATCTGAGCTCTCTGGTGATTTTGAGAGAGCGGTGTATCGTTGGACATTGGATCCAGCTGATCGTGATGCTGTTTTGGCTAATCTGGCCATTAAGAAACCTGATGAGACTGACTACAATGTCATCATCGAAATCTCCAGTGTTCGGTGTCCTGAAGAGCTTCTAGCTGTAAGAAAAGCTTACCAGCTTCGCTACAGGTGCTCCTTGGAAGAAGATCTAGCTCAACACACCGCTGGTGATATCCGCAAGCTTTTGGTTGCTTTGGTGACTGCTTACCGTTATGACGGTAATGAGATCAATGAAAAGTTGGCAAGTTCAGAAGCTAATATTCTTCACGATGCAATCAAAGAGAAGTGTTTTAATCATGAAGAAATTATTAGGATCCTGAGTACAAGGAGTAAGACACAGCTCATGGCTACATTCAACAAATACAGAGATGACCATGGCAGTTCTATCAGCAAGAATTTATTGGGGGATGGGACTAGTAATTTCCAGAAGGCATTACACGTAGCCATTCGATGCCTCAATGACCCCAAGAAGTACTTTGAGAAGGTAGTAACCAAAAATTCATGTGTAATTCTCTCTCTTTTAGAAACAATTCCCTCCCAAACTAATATATTATCCCTGATATTCTGTGTAAAGGTACTACGCAATGCCATCATAGGGACAGGGACCGATGAGAATGCTCTCACTCGGGTGATTGTTACAAGGGCAGAGAGGGACTTGAGGGACATCATGGTGGTTTACTACAAGAAGAACAGTGTTCCTCTTGAACAGGCTGTGGCCCAAGAAACTTCAGGGGACTACAAAACTTTCCTCCTTACTCTGTTGGGAAAGAACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Annexin

Protein Analysis

344

Amino Acids

38.98

Weight (kDa)

7.01

Isoelectric Point (pI)

32.98

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Annexin PF00191 14 - 76 7.3e-24 Annexin
Annexin PF00191 87 - 152 3.7e-12 Annexin
Annexin PF00191 171 - 233 5.8e-12 Annexin
Annexin PF00191 278 - 340 1.1e-15 Annexin
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 311
AccBSI CCGCTC 1 cut(s) 224
AciI CCGC 3 cut(s) 224, 423, 436
AclWI GGATC 4 cut(s) 239, 252, 568, 581
AcoI YGGCCR 1 cut(s) 279
AcsI RAATTY 2 cut(s) 655, 757
AcuI CTGAAG 2 cut(s) 366, 972
AfaI GTAC 3 cut(s) 583, 734, 837
AfiI CCNNNNNNNGG 2 cut(s) 336, 855
AflIII ACRYGT 1 cut(s) 697
AgsI TTSAA 3 cut(s) 194, 616, 965
AhlI ACTAGT 1 cut(s) 674
AleI CACNNNNGTG 1 cut(s) 887
Alw21I GWGCWC 2 cut(s) 204, 395
Alw26I GTCTC 1 cut(s) 293
AlwI GGATC 4 cut(s) 239, 252, 568, 581
Ama87I CYCGRG 1 cut(s) 885
AoxI GGCC 2 cut(s) 279, 975
ApoI RAATTY 2 cut(s) 655, 757
ArsI GACNNNNNNTTYG 2 cut(s) 52, 84
Asp700I GAANNNNTTC 3 cut(s) 177, 351, 789
AspLEI GCGC 1 cut(s) 189
AspS9I GGNCC 2 cut(s) 864, 976
AsuHPI GGTGA 4 cut(s) 221, 440, 469, 901
AvaI CYCGRG 1 cut(s) 885
AvaII GGWCC 1 cut(s) 864
BalI TGGCCA 1 cut(s) 281
BamHI GGATCC 2 cut(s) 244, 573
BanII GRGCYC 1 cut(s) 204
Bbv12I GWGCWC 2 cut(s) 204, 395
BccI CCATC 2 cut(s) 662, 857
BcgI CGANNNNNNTGC 2 cut(s) 857, 891
BcoDI GTCTC 1 cut(s) 293
BcuI ACTAGT 1 cut(s) 674
BfaI CTAG 3 cut(s) 356, 410, 675
BfmI CTRYAG 1 cut(s) 385
BfoI RGCGCY 1 cut(s) 190
BglII AGATCT 2 cut(s) 175, 406
BmcAI AGTACT 1 cut(s) 734
Bme18I GGWCC 1 cut(s) 864
BmeT110I CYCGRG 1 cut(s) 885
BmgT120I GGNCC 2 cut(s) 864, 976
BmiI GGNNCC 3 cut(s) 246, 575, 865
BmsI GCATC 5 cut(s) 14, 34, 250, 520, 701
BpmI CTGGAG 1 cut(s) 313
BpuEI CTTGAG 2 cut(s) 167, 937
BsaAI YACGTR 1 cut(s) 700
BsaJI CCNNGG 3 cut(s) 48, 396, 634
BsaXI ACNNNNNCTCC 2 cut(s) 377, 407
Bsc4I CCNNNNNNNGG 2 cut(s) 336, 855
Bse1I ACTGG 1 cut(s) 330
Bse3DI GCAATG 1 cut(s) 850
BseDI CCNNGG 3 cut(s) 48, 396, 634
BseGI GGATG 2 cut(s) 5, 673
BseLI CCNNNNNNNGG 2 cut(s) 336, 855
BseMI GCAATG 1 cut(s) 850
BseMII CTCAG 3 cut(s) 101, 189, 569
BseNI ACTGG 1 cut(s) 330
BshFI GGCC 2 cut(s) 281, 977
BsiHKAI GWGCWC 2 cut(s) 204, 395
BsiHKCI CYCGRG 1 cut(s) 885
BslFI GGGAC 7 cut(s) 94, 685, 871, 877, 926, 935, 1007
BslI CCNNNNNNNGG 2 cut(s) 336, 855
BsmAI GTCTC 1 cut(s) 293
BsmFI GGGAC 7 cut(s) 94, 685, 871, 877, 926, 935, 1007
BsmI GAATGC 1 cut(s) 880
BsnI GGCC 2 cut(s) 281, 977
BsoBI CYCGRG 1 cut(s) 885
Bsp1286I GDGCHC 2 cut(s) 204, 395
Bsp143I GATC 7 cut(s) 22, 175, 244, 253, 406, 486, 573
Bsp19I CCATGG 1 cut(s) 634
BspACI CCGC 3 cut(s) 224, 423, 436
BspANI GGCC 2 cut(s) 281, 977
BspCNI CTCAG 3 cut(s) 102, 190, 570
BspHI TCATGA 1 cut(s) 556
BspLI GGNNCC 3 cut(s) 246, 575, 865
BspPI GGATC 4 cut(s) 239, 252, 568, 581
BspQI GCTCTTC 1 cut(s) 342
BsrBI CCGCTC 1 cut(s) 224
BsrDI GCAATG 1 cut(s) 850
BsrI ACTGG 1 cut(s) 330
BssECI CCNNGG 3 cut(s) 48, 396, 634
BssMI GATC 7 cut(s) 22, 175, 244, 253, 406, 486, 573
BssT1I CCWWGG 2 cut(s) 396, 634
Bst4CI ACNGT 3 cut(s) 470, 479, 953
Bst6I CTCTTC 1 cut(s) 342
BstBAI YACGTR 1 cut(s) 700
BstC8I GCNNGC 1 cut(s) 440
BstDEI CTNAG 3 cut(s) 110, 198, 578
BstDSI CCRYGG 1 cut(s) 634
BstF5I GGATG 2 cut(s) 5, 673
BstH2I RGCGCY 1 cut(s) 190
BstHHI GCGC 1 cut(s) 189
BstKTI GATC 7 cut(s) 25, 178, 247, 256, 409, 489, 576
BstMAI GTCTC 1 cut(s) 293
BstMBI GATC 7 cut(s) 22, 175, 244, 253, 406, 486, 573
BstMWI GCNNNNNNNGC 3 cut(s) 269, 278, 390
BstSFI CTRYAG 1 cut(s) 385
BstX2I RGATCY 4 cut(s) 175, 244, 406, 573
BstYI RGATCY 4 cut(s) 175, 244, 406, 573
BsuRI GGCC 2 cut(s) 281, 977
BtgI CCRYGG 1 cut(s) 634
BtsCI GGATG 2 cut(s) 5, 673
BtsIMutI CAGTG 2 cut(s) 337, 958
Cac8I GCNNGC 1 cut(s) 440
CciI TCATGA 1 cut(s) 556
CfoI GCGC 1 cut(s) 189
Cfr13I GGNCC 2 cut(s) 864, 976
Csp6I GTAC 3 cut(s) 582, 733, 836
CviAII CATG 5 cut(s) 557, 604, 635, 762, 928
CviQI GTAC 3 cut(s) 582, 733, 836
DdeI CTNAG 3 cut(s) 110, 198, 578
DpnI GATC 7 cut(s) 24, 177, 246, 255, 408, 488, 575
DpnII GATC 7 cut(s) 22, 175, 244, 253, 406, 486, 573
DrdI GACNNNNNNGTC 1 cut(s) 311
DseDI GACNNNNNNGTC 1 cut(s) 311
EaeI YGGCCR 1 cut(s) 279
Eam1104I CTCTTC 1 cut(s) 342
EarI CTCTTC 1 cut(s) 342
Ecl136II GAGCTC 1 cut(s) 202
Eco130I CCWWGG 2 cut(s) 396, 634
Eco24I GRGCYC 1 cut(s) 204
Eco32I GATATC 1 cut(s) 433
Eco47I GGWCC 1 cut(s) 864
Eco53kI GAGCTC 1 cut(s) 202
Eco57I CTGAAG 2 cut(s) 366, 972
Eco88I CYCGRG 1 cut(s) 885
EcoICRI GAGCTC 1 cut(s) 202
EcoRV GATATC 1 cut(s) 433
EcoT14I CCWWGG 2 cut(s) 396, 634
EcoT38I GRGCYC 1 cut(s) 204
ErhI CCWWGG 2 cut(s) 396, 634
FaeI CATG 5 cut(s) 560, 607, 638, 765, 931
FalI AAGNNNNNCTT 6 cut(s) 162, 194, 355, 387, 719, 751
FaqI GGGAC 7 cut(s) 94, 685, 871, 877, 926, 935, 1007
FatI CATG 5 cut(s) 556, 603, 634, 761, 927
FokI GGATG 1 cut(s) 680
FriOI GRGCYC 1 cut(s) 204
FspBI CTAG 3 cut(s) 356, 410, 675
GlaI GCGC 1 cut(s) 188
GsuI CTGGAG 1 cut(s) 313
HaeII RGCGCY 1 cut(s) 190
HaeIII GGCC 2 cut(s) 281, 977
HhaI GCGC 1 cut(s) 189
Hin1II CATG 5 cut(s) 560, 607, 638, 765, 931
Hin6I GCGC 1 cut(s) 187
HinP1I GCGC 1 cut(s) 187
HindIII AAGCTT 2 cut(s) 369, 440
HinfI GANTC 2 cut(s) 112, 194
HphI GGTGA 4 cut(s) 221, 440, 469, 901
Hpy166II GTNNAC 1 cut(s) 937
Hpy188I TCNGA 2 cut(s) 199, 511
Hpy188III TCNNGA 9 cut(s) 20, 170, 257, 344, 527, 557, 577, 685, 962
Hpy8I GTNNAC 1 cut(s) 937
HpyAV CCTTC 3 cut(s) 85, 682, 736
HpyCH4III ACNGT 3 cut(s) 470, 479, 953
HpyCH4IV ACGT 1 cut(s) 699
HpyCH4V TGCA 2 cut(s) 125, 533
HpyF10VI GCNNNNNNNGC 3 cut(s) 269, 278, 390
HpyF3I CTNAG 3 cut(s) 110, 198, 578
HpySE526I ACGT 1 cut(s) 699
Hsp92II CATG 5 cut(s) 560, 607, 638, 765, 931
HspAI GCGC 1 cut(s) 187
Kzo9I GATC 7 cut(s) 22, 175, 244, 253, 406, 486, 573
LguI GCTCTTC 1 cut(s) 342
LmnI GCTCC 1 cut(s) 398
LweI GCATC 5 cut(s) 14, 34, 250, 520, 701
MaeI CTAG 3 cut(s) 356, 410, 675
MaeII ACGT 1 cut(s) 699
MaeIII GTNAC 3 cut(s) 457, 748, 895
MalI GATC 7 cut(s) 24, 177, 246, 255, 408, 488, 575
MbiI CCGCTC 1 cut(s) 224
MboI GATC 7 cut(s) 22, 175, 244, 253, 406, 486, 573
MboII GAAGA 8 cut(s) 170, 185, 359, 413, 416, 515, 572, 958
MflI RGATCY 4 cut(s) 175, 244, 406, 573
MhlI GDGCHC 2 cut(s) 204, 395
MlsI TGGCCA 1 cut(s) 281
MluCI AATT 6 cut(s) 564, 655, 679, 757, 768, 789
MluNI TGGCCA 1 cut(s) 281
MlyI GAGTC 1 cut(s) 121
MmeI TCCRAC 1 cut(s) 215
MnlI CCTC 7 cut(s) 43, 725, 805, 903, 912, 969, 1019
Mox20I TGGCCA 1 cut(s) 281
MroXI GAANNNNTTC 3 cut(s) 177, 351, 789
MscI TGGCCA 1 cut(s) 281
MseI TTAA 2 cut(s) 285, 552
MslI CAYNNNNRTG 3 cut(s) 120, 887, 929
Msp20I TGGCCA 1 cut(s) 281
MspA1I CMGCKG 2 cut(s) 251, 425
Mva1269I GAATGC 1 cut(s) 880
MwoI GCNNNNNNNGC 3 cut(s) 269, 278, 390
NcoI CCATGG 1 cut(s) 634
NdeII GATC 7 cut(s) 22, 175, 244, 253, 406, 486, 573
NlaIII CATG 5 cut(s) 560, 607, 638, 765, 931
NlaIV GGNNCC 3 cut(s) 246, 575, 865
NmeAIII GCCGAG 1 cut(s) 73
NmuCI GTSAC 1 cut(s) 457
OliI CACNNNNGTG 1 cut(s) 887
PagI TCATGA 1 cut(s) 556
PciSI GCTCTTC 1 cut(s) 342
PctI GAATGC 1 cut(s) 880
PdmI GAANNNNTTC 3 cut(s) 177, 351, 789
PfeI GAWTC 1 cut(s) 194
PleI GAGTC 1 cut(s) 120
PpsI GAGTC 1 cut(s) 120
Ppu21I YACGTR 1 cut(s) 700
Psp124BI GAGCTC 1 cut(s) 204
PspN4I GGNNCC 3 cut(s) 246, 575, 865
PspPI GGNCC 2 cut(s) 864, 976
PsuI RGATCY 4 cut(s) 175, 244, 406, 573
PvuII CAGCTG 1 cut(s) 251
RsaI GTAC 3 cut(s) 583, 734, 837
RsaNI GTAC 3 cut(s) 582, 733, 836
RseI CAYNNNNRTG 3 cut(s) 120, 887, 929
SacI GAGCTC 1 cut(s) 204
SapI GCTCTTC 1 cut(s) 342
SaqAI TTAA 2 cut(s) 285, 552
Sau3AI GATC 7 cut(s) 22, 175, 244, 253, 406, 486, 573
Sau96I GGNCC 2 cut(s) 864, 976
ScaI AGTACT 1 cut(s) 734
SchI GAGTC 1 cut(s) 121
SduI GDGCHC 2 cut(s) 204, 395
SfaNI GCATC 5 cut(s) 14, 34, 250, 520, 701
SfcI CTRYAG 1 cut(s) 385
SinI GGWCC 1 cut(s) 864
SmiMI CAYNNNNRTG 3 cut(s) 120, 887, 929
SmlI CTYRAG 2 cut(s) 182, 916
SmoI CTYRAG 2 cut(s) 182, 916
SpeI ACTAGT 1 cut(s) 674
Sse9I AATT 6 cut(s) 564, 655, 679, 757, 768, 789
SsiI CCGC 3 cut(s) 224, 423, 436
SspI AATATT 1 cut(s) 520
SspMI CTAG 3 cut(s) 356, 410, 675
SstI GAGCTC 1 cut(s) 204
StyI CCWWGG 2 cut(s) 396, 634
TaaI ACNGT 3 cut(s) 470, 479, 953
TaiI ACGT 1 cut(s) 702
TaqI TCGA 2 cut(s) 321, 709
TaqII GACCGA 1 cut(s) 881
TasI AATT 6 cut(s) 564, 655, 679, 757, 768, 789
TatI WGTACW 2 cut(s) 581, 732
TfiI GAWTC 1 cut(s) 194
Tru1I TTAA 2 cut(s) 285, 552
Tru9I TTAA 2 cut(s) 285, 552
TscAI CASTG 2 cut(s) 337, 958
TseFI GTSAC 1 cut(s) 457
Tsp45I GTSAC 1 cut(s) 457
TspDTI ATGAA 4 cut(s) 171, 507, 573, 750
TspRI CASTG 2 cut(s) 337, 958
VpaK11BI GGWCC 1 cut(s) 864
XapI RAATTY 2 cut(s) 655, 757
XmnI GAANNNNTTC 3 cut(s) 177, 351, 789
XspI CTAG 3 cut(s) 356, 410, 675
ZrmI AGTACT 1 cut(s) 734
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.