Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000001

Orthogroup ID

OG0001318

Physical Location & Seq

Genomic Coordinates Forward (+)

5664278 .. 5664970

Gene Structure 693 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug01G0033500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 693 bp

ATGGCTATTCTTCCTTCTCCTAATAATAGAAACATGGAACTGTCACCTGATCATAGGAGGGCTCGCAAGAAGATGTATCGAGATCGAAAGATGAATATATTTAAGAAGGCGGAGGAGCTTTCCATACTTTGTGGTATCGATGTCGGTGTGATCCTGTTCCAACCAGCTGAGAAGAGTACTACTACTCAACCAGCTGCAGAGACTTGGCCTAAAGATCCTACAGAAGTCAAGCGCATTATCCGGAGATACAAGGCAAAGCCTGCCTACACTCTTGCTTCATCTCCCAGCAAAAGCCCGCCGGCAATTAAAGATACTACCAGTAGTACTCCTTCATCTTCATCTTCATCTCCATCTCCATCTCCATCTCGAAGTGTACTAGGGAAGAGAAATTTCCTAAACTTAGATTTGTCTTTGTCTGGTTTTTATGATTCGCGAATGAAAATTTTAAAAGATGACAAAGGTAAGAAGAAGTTGCATGCTGATAATGATGAGAACATAAATTCCGAAGAGGAGATGGGGATGCAGTACGAGTTTCACACAAGATGGAATGCTGCTGGAAAAGATGAATTATACAAGGACGACGACAAATTGAGGATTGGATATGATGATCATGAGGCAAAGCTTGCTTCACTGGAAGCTAAGGGAGAAGCTATAACAAAGAGGATTGCTTCATTGGAGGCGACTTATGTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Annexin

Protein Analysis

230

Amino Acids

25.9

Weight (kDa)

9.28

Isoelectric Point (pI)

67.09

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SRF-TF	PF00319	19 - 61	2.4e-12	SRF-type transcription factor (DNA-binding and dimerisation domain)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001318)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G12380
fragaria_vesca	FvH4_7g02680 FvH4_7g02680
malus_domestica	MD02G1291000.v1.1 MD07G1035500.v1.1 MD07G1036200.v1.1 MD07G1036300.v1.1
prunus_persica	Prupe.2G031900_v2.0.a1 Prupe.2G031900_v2.0.a1
pyrus_communis	pycom02g24600 pycom07g02490 pycom07g02500
rosa_chinensis	RchiOBHm_Chr1g0321371 RchiOBHm_Chr1g0321531 RchiOBHm_Chr1g0321551 RchiOBHm_Chr1g0321701
rosa_laevigata	RLG00000030411 RLG00000030414 RLG00000030418
rosa_multiflora	Rmu_sc0000087.1_g000010 Rmu_sc0000087.1_g000013 Rmu_sc0000196.1_g000001 Rmu_sc0000724.1_g000024 Rmu_sc0000724.1_g000032 Rmu_sc0000960.1_g000004 Rmu_sc0003410.1_g000041 Rmu_sc0003410.1_g000044 Rmu_sc0025973.1_g000001
rosa_roxburghii	Rroxscaffold_160G00434000 Rroxscaffold_4G00327530 Rroxscaffold_4G00327560 Rroxscaffold_4G00327790
rosa_rugosa	Rorug01G0033300 Rorug01G0033500 Rorug01G0033600 Rorug01G0033700
rosa_samantha	Rh1AG044600 Rh1AG045100 Rh1AG045200 Rh1AG045600 Rh1AG046300 Rh1BG042300 Rh1BG043600 Rh1BG044800 Rh1CG047200 Rh1DG052300 Rh1DG052400 Rh1DG052800 Rh1DG054800
rosa_wichuraiana	Rw1G003980 Rw1G004000 Rw1G004080 Rw1G004120 Rw1G004140

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	433
AccIII	TCCGGA	1 cut(s)	240
AciI	CCGC	2 cut(s)	110, 296
AclWI	GGATC	2 cut(s)	145, 209
AcsI	RAATTY	3 cut(s)	388, 441, 499
AfaI	GTAC	4 cut(s)	178, 325, 375, 527
AloI	GAACNNNNNNTCC	2 cut(s)	485, 517
AluBI	AGCT	6 cut(s)	118, 167, 194, 622, 638, 650
AluI	AGCT	6 cut(s)	118, 167, 194, 622, 638, 650
Alw26I	GTCTC	1 cut(s)	194
AlwI	GGATC	2 cut(s)	145, 209
Aor13HI	TCCGGA	1 cut(s)	240
AoxI	GGCC	1 cut(s)	206
ApeKI	GCWGC	2 cut(s)	194, 551
ApoI	RAATTY	3 cut(s)	388, 441, 499
AspLEI	GCGC	1 cut(s)	234
AsuHPI	GGTGA	1 cut(s)	36
BanII	GRGCYC	1 cut(s)	64
BarI	GAAGNNNNNNTAC	2 cut(s)	313, 345
BbvI	GCAGC	2 cut(s)	181, 538
BccI	CCATC	5 cut(s)	358, 364, 370, 508, 537
BclI	TGATCA	2 cut(s)	49, 607
BcoDI	GTCTC	1 cut(s)	194
BfaI	CTAG	1 cut(s)	377
BfmI	CTRYAG	2 cut(s)	195, 219
BisI	GCNGC	2 cut(s)	195, 552
BlsI	GCNGC	2 cut(s)	196, 553
BmcAI	AGTACT	2 cut(s)	178, 325
BmsI	GCATC	1 cut(s)	510
Bpu10I	CCTNAGC	1 cut(s)	639
Bsa29I	ATCGAT	1 cut(s)	138
BsaWI	WCCGGW	1 cut(s)	240
Bse118I	RCCGGY	1 cut(s)	298
Bse1I	ACTGG	2 cut(s)	318, 636
BseAI	TCCGGA	1 cut(s)	240
BseCI	ATCGAT	1 cut(s)	138
BseGI	GGATG	1 cut(s)	525
BseMII	CTCAG	1 cut(s)	159
BseNI	ACTGG	2 cut(s)	318, 636
BseRI	GAGGAG	2 cut(s)	128, 524
BseXI	GCAGC	2 cut(s)	181, 538
BseYI	CCCAGC	1 cut(s)	284
Bsh1236I	CGCG	1 cut(s)	433
BshFI	GGCC	1 cut(s)	208
BshVI	ATCGAT	1 cut(s)	138
BsiSI	CCGG	2 cut(s)	241, 299
BsmAI	GTCTC	1 cut(s)	194
BsmI	GAATGC	1 cut(s)	553
BsnI	GGCC	1 cut(s)	208
Bsp1286I	GDGCHC	1 cut(s)	64
Bsp13I	TCCGGA	1 cut(s)	240
Bsp143I	GATC	5 cut(s)	49, 82, 150, 214, 607
Bsp68I	TCGCGA	1 cut(s)	433
BspACI	CCGC	2 cut(s)	110, 296
BspANI	GGCC	1 cut(s)	208
BspCNI	CTCAG	1 cut(s)	160
BspDI	ATCGAT	1 cut(s)	138
BspEI	TCCGGA	1 cut(s)	240
BspFNI	CGCG	1 cut(s)	433
BspHI	TCATGA	1 cut(s)	610
BspMAI	CTGCAG	1 cut(s)	199
BspPI	GGATC	2 cut(s)	145, 209
BsrFI	RCCGGY	1 cut(s)	298
BsrI	ACTGG	2 cut(s)	318, 636
BssAI	RCCGGY	1 cut(s)	298
BssMI	GATC	5 cut(s)	49, 82, 150, 214, 607
Bst4CI	ACNGT	1 cut(s)	42
Bst6I	CTCTTC	3 cut(s)	167, 377, 501
BstAPI	GCANNNNNTGC	2 cut(s)	260, 623
BstC8I	GCNNGC	6 cut(s)	64, 261, 296, 300, 477, 624
BstDEI	CTNAG	3 cut(s)	168, 400, 639
BstF5I	GGATG	1 cut(s)	525
BstFNI	CGCG	1 cut(s)	433
BstHHI	GCGC	1 cut(s)	234
BstKTI	GATC	5 cut(s)	52, 85, 153, 217, 610
BstMAI	GTCTC	1 cut(s)	194
BstMBI	GATC	5 cut(s)	49, 82, 150, 214, 607
BstMWI	GCNNNNNNNGC	2 cut(s)	260, 623
BstNSI	RCATGY	1 cut(s)	479
BstSFI	CTRYAG	2 cut(s)	195, 219
BstUI	CGCG	1 cut(s)	433
BstV1I	GCAGC	2 cut(s)	181, 538
BstX2I	RGATCY	1 cut(s)	214
BstYI	RGATCY	1 cut(s)	214
Bsu15I	ATCGAT	1 cut(s)	138
BsuRI	GGCC	1 cut(s)	208
BsuTUI	ATCGAT	1 cut(s)	138
BtsCI	GGATG	1 cut(s)	525
BtsIMutI	CAGTG	1 cut(s)	629
BtuMI	TCGCGA	1 cut(s)	433
Cac8I	GCNNGC	6 cut(s)	64, 261, 296, 300, 477, 624
CciI	TCATGA	1 cut(s)	610
CfoI	GCGC	1 cut(s)	234
Cfr10I	RCCGGY	1 cut(s)	298
ClaI	ATCGAT	1 cut(s)	138
Csp6I	GTAC	4 cut(s)	177, 324, 374, 526
CviAII	CATG	3 cut(s)	34, 476, 611
CviQI	GTAC	4 cut(s)	177, 324, 374, 526
DdeI	CTNAG	3 cut(s)	168, 400, 639
DpnI	GATC	5 cut(s)	51, 84, 152, 216, 609
DpnII	GATC	5 cut(s)	49, 82, 150, 214, 607
DraI	TTTAAA	1 cut(s)	447
Eam1104I	CTCTTC	3 cut(s)	167, 377, 501
EarI	CTCTTC	3 cut(s)	167, 377, 501
EciI	GGCGGA	1 cut(s)	125
Eco24I	GRGCYC	1 cut(s)	64
EcoT38I	GRGCYC	1 cut(s)	64
FaeI	CATG	3 cut(s)	37, 479, 614
FatI	CATG	3 cut(s)	33, 475, 610
FauI	CCCGC	1 cut(s)	303
FbaI	TGATCA	2 cut(s)	49, 607
Fnu4HI	GCNGC	2 cut(s)	195, 552
FokI	GGATG	1 cut(s)	532
FriOI	GRGCYC	1 cut(s)	64
Fsp4HI	GCNGC	2 cut(s)	195, 552
FspBI	CTAG	1 cut(s)	377
GlaI	GCGC	1 cut(s)	233
GluI	GCNGC	2 cut(s)	195, 552
GsaI	CCCAGC	1 cut(s)	288
HaeIII	GGCC	1 cut(s)	208
HapII	CCGG	2 cut(s)	241, 299
HhaI	GCGC	1 cut(s)	234
Hin1II	CATG	3 cut(s)	37, 479, 614
Hin6I	GCGC	1 cut(s)	232
HinP1I	GCGC	1 cut(s)	232
HindIII	AAGCTT	1 cut(s)	620
HinfI	GANTC	1 cut(s)	428
HpaII	CCGG	2 cut(s)	241, 299
HphI	GGTGA	1 cut(s)	36
Hpy166II	GTNNAC	1 cut(s)	374
Hpy188I	TCNGA	1 cut(s)	505
Hpy188III	TCNNGA	5 cut(s)	80, 241, 366, 432, 611
Hpy8I	GTNNAC	1 cut(s)	374
Hpy99I	CGWCG	1 cut(s)	584
HpyAV	CCTTC	3 cut(s)	24, 100, 339
HpyCH4III	ACNGT	1 cut(s)	42
HpyCH4V	TGCA	3 cut(s)	197, 475, 523
HpyF10VI	GCNNNNNNNGC	2 cut(s)	260, 623
HpyF3I	CTNAG	3 cut(s)	168, 400, 639
Hsp92II	CATG	3 cut(s)	37, 479, 614
HspAI	GCGC	1 cut(s)	232
Kpn2I	TCCGGA	1 cut(s)	240
KroI	GCCGGC	1 cut(s)	298
KroNI	GCCGGC	1 cut(s)	300
Ksp22I	TGATCA	2 cut(s)	49, 607
Kzo9I	GATC	5 cut(s)	49, 82, 150, 214, 607
LmnI	GCTCC	1 cut(s)	115
Lsp1109I	GCAGC	2 cut(s)	181, 538
LweI	GCATC	1 cut(s)	510
MaeI	CTAG	1 cut(s)	377
MaeIII	GTNAC	1 cut(s)	42
MalI	GATC	5 cut(s)	51, 84, 152, 216, 609
MboI	GATC	5 cut(s)	49, 82, 150, 214, 607
MboII	GAAGA	7 cut(s)	82, 184, 327, 333, 394, 478, 518
MflI	RGATCY	1 cut(s)	214
MhlI	GDGCHC	1 cut(s)	64
MluCI	AATT	6 cut(s)	303, 388, 441, 499, 566, 587
MmeI	TCCRAC	1 cut(s)	184
MnlI	CCTC	7 cut(s)	51, 106, 502, 585, 607, 654, 670
MroI	TCCGGA	1 cut(s)	240
MroNI	GCCGGC	1 cut(s)	298
MseI	TTAA	4 cut(s)	102, 306, 446, 691
MspA1I	CMGCKG	2 cut(s)	167, 194
MspI	CCGG	2 cut(s)	241, 299
Mva1269I	GAATGC	1 cut(s)	553
MvnI	CGCG	1 cut(s)	433
MwoI	GCNNNNNNNGC	2 cut(s)	260, 623
NaeI	GCCGGC	1 cut(s)	300
NdeII	GATC	5 cut(s)	49, 82, 150, 214, 607
NgoMIV	GCCGGC	1 cut(s)	298
NlaIII	CATG	3 cut(s)	37, 479, 614
NmuCI	GTSAC	1 cut(s)	42
NruI	TCGCGA	1 cut(s)	433
NspI	RCATGY	1 cut(s)	479
PaeI	GCATGC	1 cut(s)	479
PagI	TCATGA	1 cut(s)	610
PctI	GAATGC	1 cut(s)	553
PdiI	GCCGGC	1 cut(s)	300
PfeI	GAWTC	1 cut(s)	428
PkrI	GCNGC	2 cut(s)	196, 553
PspFI	CCCAGC	1 cut(s)	284
PstI	CTGCAG	1 cut(s)	199
PsuI	RGATCY	1 cut(s)	214
PvuII	CAGCTG	2 cut(s)	167, 194
RruI	TCGCGA	1 cut(s)	433
RsaI	GTAC	4 cut(s)	178, 325, 375, 527
RsaNI	GTAC	4 cut(s)	177, 324, 374, 526
SaqAI	TTAA	4 cut(s)	102, 306, 446, 691
SatI	GCNGC	2 cut(s)	195, 552
Sau3AI	GATC	5 cut(s)	49, 82, 150, 214, 607
ScaI	AGTACT	2 cut(s)	178, 325
SduI	GDGCHC	1 cut(s)	64
SetI	ASST	8 cut(s)	49, 120, 169, 196, 463, 624, 640, 652
SfaNI	GCATC	1 cut(s)	510
SfcI	CTRYAG	2 cut(s)	195, 219
SphI	GCATGC	1 cut(s)	479
Sse9I	AATT	6 cut(s)	303, 388, 441, 499, 566, 587
SsiI	CCGC	2 cut(s)	110, 296
SspMI	CTAG	1 cut(s)	377
TaaI	ACNGT	1 cut(s)	42
TaqI	TCGA	4 cut(s)	79, 85, 138, 367
TasI	AATT	6 cut(s)	303, 388, 441, 499, 566, 587
TatI	WGTACW	3 cut(s)	176, 323, 373
TfiI	GAWTC	1 cut(s)	428
Tru1I	TTAA	4 cut(s)	102, 306, 446, 691
Tru9I	TTAA	4 cut(s)	102, 306, 446, 691
TscAI	CASTG	1 cut(s)	636
TseFI	GTSAC	1 cut(s)	42
TseI	GCWGC	2 cut(s)	194, 551
Tsp45I	GTSAC	1 cut(s)	42
TspDTI	ATGAA	8 cut(s)	107, 267, 321, 327, 333, 452, 579, 660
TspRI	CASTG	1 cut(s)	636
XapI	RAATTY	3 cut(s)	388, 441, 499
XceI	RCATGY	1 cut(s)	479
XspI	CTAG	1 cut(s)	377
ZrmI	AGTACT	2 cut(s)	178, 325

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.