Rw1G003980

Annexin-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr1
OG0001318
Physical Location & Seq
Reverse (-)
7492671 .. 7495125
2455 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw1G003980.1

Sequence Viewer

Length: 660 bp
ATGGCATCCCTTATTACTCCAGATCAGTTCTCTGCTAACCAAGATGCCGAGGCTCTCCGAAAGGCGTGTCAAGGATGGGGGACTAATGAGAAGGTCATCATCTCCATACTGGGTCATAGAAGTGCAACTCAAAGAAAAGAAATCAGGGTCGCTTATGAACAACTTTATCAAGAAGATCTTCTCAAGCGCCTTGAATCTGAGCTCTCTGGTGATTTTGAGAGAGCGGTGTACCGTTGGACATTGGATCCAGCTGATCGTGATGCTGTTTTGGCTAATCTGGCCATTAAGAAACCCGAGACTGACTACAATGTCATCATCGAAATCTCCAGCGCTCGGTGTCCTGAAGAGCTTCTAGCTGTAAGAAAAGCTTACCAGCTTCGCTACAGGTGCTCCTTGGAAGAAGATCTAGCTCAACACACCACTGGTGATATCCGCAAGCTTTTGGTTGCTTTGGTGACTGCTTACCGCTATGACGGTAATGAGATCAATGAAAAGTTGGCGAGCTCAGAAGCTAATATTCTTCACGATGCTATCAAAGGGAAGTGTTTTAATCATGAAGAAATTATTAGGATCCTAAGTACAAGGAGCAAGACACAGCTCATGGCTACATTCAACAAATACAGAGATGACCATGGCAGTTCTATCAGCAAAGTAAGATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Annexin

Protein Analysis

219

Amino Acids

24.99

Weight (kDa)

6.54

Isoelectric Point (pI)

38.25

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Annexin PF00191 14 - 76 3e-24 Annexin
Annexin PF00191 87 - 151 5.1e-15 Annexin
Annexin PF00191 170 - 217 1.3e-09 Annexin
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 308
AccBSI CCGCTC 1 cut(s) 224
AciI CCGC 3 cut(s) 224, 433, 466
AclWI GGATC 4 cut(s) 239, 252, 565, 578
AcoI YGGCCR 1 cut(s) 279
AcuI CTGAAG 1 cut(s) 363
AfaI GTAC 2 cut(s) 230, 580
AfeI AGCGCT 1 cut(s) 331
AfiI CCNNNNNNNGG 1 cut(s) 333
AgsI TTSAA 2 cut(s) 194, 613
Alw21I GWGCWC 3 cut(s) 204, 392, 506
Alw26I GTCTC 1 cut(s) 290
AlwI GGATC 4 cut(s) 239, 252, 565, 578
Ama87I CYCGRG 1 cut(s) 293
Aor51HI AGCGCT 1 cut(s) 331
AoxI GGCC 1 cut(s) 279
ArsI GACNNNNNNTTYG 2 cut(s) 52, 84
Asp700I GAANNNNTTC 2 cut(s) 177, 348
AspLEI GCGC 2 cut(s) 189, 332
AsuHPI GGTGA 3 cut(s) 221, 437, 466
AvaI CYCGRG 1 cut(s) 293
BalI TGGCCA 1 cut(s) 281
BamHI GGATCC 2 cut(s) 244, 570
BanII GRGCYC 2 cut(s) 204, 506
Bbv12I GWGCWC 3 cut(s) 204, 392, 506
BccI CCATC 1 cut(s) 69
BcoDI GTCTC 1 cut(s) 290
BfaI CTAG 2 cut(s) 353, 407
BfmI CTRYAG 1 cut(s) 382
BfoI RGCGCY 2 cut(s) 190, 333
BglII AGATCT 2 cut(s) 175, 403
BmeT110I CYCGRG 1 cut(s) 293
BmiI GGNNCC 2 cut(s) 246, 572
BmrI ACTGGG 1 cut(s) 119
BmsI GCATC 4 cut(s) 14, 34, 250, 517
BmuI ACTGGG 1 cut(s) 119
BpmI CTGGAG 1 cut(s) 310
BpuEI CTTGAG 1 cut(s) 167
BsaJI CCNNGG 3 cut(s) 48, 393, 631
BsaXI ACNNNNNCTCC 2 cut(s) 374, 404
Bsc4I CCNNNNNNNGG 1 cut(s) 333
Bse1I ACTGG 2 cut(s) 114, 427
BseDI CCNNGG 3 cut(s) 48, 393, 631
BseGI GGATG 2 cut(s) 5, 80
BseLI CCNNNNNNNGG 1 cut(s) 333
BseMII CTCAG 2 cut(s) 189, 519
BseNI ACTGG 2 cut(s) 114, 427
BshFI GGCC 1 cut(s) 281
BsiHKAI GWGCWC 3 cut(s) 204, 392, 506
BsiHKCI CYCGRG 1 cut(s) 293
BslFI GGGAC 1 cut(s) 94
BslI CCNNNNNNNGG 1 cut(s) 333
BsmAI GTCTC 1 cut(s) 290
BsmFI GGGAC 1 cut(s) 94
BsnI GGCC 1 cut(s) 281
BsoBI CYCGRG 1 cut(s) 293
Bsp1286I GDGCHC 3 cut(s) 204, 392, 506
Bsp143I GATC 7 cut(s) 22, 175, 244, 253, 403, 483, 570
Bsp19I CCATGG 1 cut(s) 631
BspACI CCGC 3 cut(s) 224, 433, 466
BspANI GGCC 1 cut(s) 281
BspCNI CTCAG 2 cut(s) 190, 518
BspHI TCATGA 1 cut(s) 553
BspLI GGNNCC 2 cut(s) 246, 572
BspPI GGATC 4 cut(s) 239, 252, 565, 578
BspQI GCTCTTC 1 cut(s) 339
BsrBI CCGCTC 1 cut(s) 224
BsrI ACTGG 2 cut(s) 114, 427
BssECI CCNNGG 3 cut(s) 48, 393, 631
BssMI GATC 7 cut(s) 22, 175, 244, 253, 403, 483, 570
BssT1I CCWWGG 2 cut(s) 393, 631
Bst4CI ACNGT 2 cut(s) 233, 476
Bst6I CTCTTC 1 cut(s) 339
BstC8I GCNNGC 2 cut(s) 437, 502
BstDEI CTNAG 3 cut(s) 198, 505, 575
BstDSI CCRYGG 1 cut(s) 631
BstF5I GGATG 2 cut(s) 5, 80
BstH2I RGCGCY 2 cut(s) 190, 333
BstHHI GCGC 2 cut(s) 189, 332
BstKTI GATC 7 cut(s) 25, 178, 247, 256, 406, 486, 573
BstMAI GTCTC 1 cut(s) 290
BstMBI GATC 7 cut(s) 22, 175, 244, 253, 403, 483, 570
BstMWI GCNNNNNNNGC 3 cut(s) 269, 278, 387
BstSFI CTRYAG 1 cut(s) 382
BstX2I RGATCY 4 cut(s) 175, 244, 403, 570
BstYI RGATCY 4 cut(s) 175, 244, 403, 570
BsuRI GGCC 1 cut(s) 281
BtgI CCRYGG 1 cut(s) 631
BtsCI GGATG 2 cut(s) 5, 80
BtsIMutI CAGTG 1 cut(s) 420
Cac8I GCNNGC 2 cut(s) 437, 502
CciI TCATGA 1 cut(s) 553
CfoI GCGC 2 cut(s) 189, 332
Csp6I GTAC 2 cut(s) 229, 579
CviAII CATG 3 cut(s) 554, 601, 632
CviQI GTAC 2 cut(s) 229, 579
DdeI CTNAG 3 cut(s) 198, 505, 575
DpnI GATC 7 cut(s) 24, 177, 246, 255, 405, 485, 572
DpnII GATC 7 cut(s) 22, 175, 244, 253, 403, 483, 570
DrdI GACNNNNNNGTC 1 cut(s) 308
DseDI GACNNNNNNGTC 1 cut(s) 308
EaeI YGGCCR 1 cut(s) 279
Eam1104I CTCTTC 1 cut(s) 339
EarI CTCTTC 1 cut(s) 339
Ecl136II GAGCTC 2 cut(s) 202, 504
Eco130I CCWWGG 2 cut(s) 393, 631
Eco24I GRGCYC 2 cut(s) 204, 506
Eco32I GATATC 1 cut(s) 430
Eco47III AGCGCT 1 cut(s) 331
Eco53kI GAGCTC 2 cut(s) 202, 504
Eco57I CTGAAG 1 cut(s) 363
Eco88I CYCGRG 1 cut(s) 293
EcoICRI GAGCTC 2 cut(s) 202, 504
EcoRV GATATC 1 cut(s) 430
EcoT14I CCWWGG 2 cut(s) 393, 631
EcoT38I GRGCYC 2 cut(s) 204, 506
ErhI CCWWGG 2 cut(s) 393, 631
FaeI CATG 3 cut(s) 557, 604, 635
FaiI YATR 7 cut(s) 107, 117, 156, 471, 555, 602, 633
FalI AAGNNNNNCTT 4 cut(s) 162, 194, 352, 384
FaqI GGGAC 1 cut(s) 94
FatI CATG 3 cut(s) 553, 600, 631
FokI GGATG 1 cut(s) 87
FriOI GRGCYC 2 cut(s) 204, 506
FspBI CTAG 2 cut(s) 353, 407
GlaI GCGC 2 cut(s) 188, 331
GsuI CTGGAG 1 cut(s) 310
HaeII RGCGCY 2 cut(s) 190, 333
HaeIII GGCC 1 cut(s) 281
HhaI GCGC 2 cut(s) 189, 332
Hin1II CATG 3 cut(s) 557, 604, 635
Hin6I GCGC 2 cut(s) 187, 330
HinP1I GCGC 2 cut(s) 187, 330
HindIII AAGCTT 2 cut(s) 366, 437
HinfI GANTC 1 cut(s) 194
HphI GGTGA 3 cut(s) 221, 437, 466
Hpy166II GTNNAC 1 cut(s) 229
Hpy188I TCNGA 3 cut(s) 59, 199, 508
Hpy188III TCNNGA 6 cut(s) 20, 170, 257, 341, 524, 554
Hpy8I GTNNAC 1 cut(s) 229
HpyAV CCTTC 1 cut(s) 85
HpyCH4III ACNGT 2 cut(s) 233, 476
HpyCH4V TGCA 1 cut(s) 125
HpyF10VI GCNNNNNNNGC 3 cut(s) 269, 278, 387
HpyF3I CTNAG 3 cut(s) 198, 505, 575
Hsp92II CATG 3 cut(s) 557, 604, 635
HspAI GCGC 2 cut(s) 187, 330
Kzo9I GATC 7 cut(s) 22, 175, 244, 253, 403, 483, 570
LguI GCTCTTC 1 cut(s) 339
LmnI GCTCC 2 cut(s) 395, 585
LweI GCATC 4 cut(s) 14, 34, 250, 517
MaeI CTAG 2 cut(s) 353, 407
MaeIII GTNAC 1 cut(s) 454
MalI GATC 7 cut(s) 24, 177, 246, 255, 405, 485, 572
MbiI CCGCTC 1 cut(s) 224
MboI GATC 7 cut(s) 22, 175, 244, 253, 403, 483, 570
MboII GAAGA 7 cut(s) 170, 185, 356, 410, 413, 512, 569
MflI RGATCY 4 cut(s) 175, 244, 403, 570
MhlI GDGCHC 3 cut(s) 204, 392, 506
MlsI TGGCCA 1 cut(s) 281
MluCI AATT 1 cut(s) 561
MluNI TGGCCA 1 cut(s) 281
MmeI TCCRAC 1 cut(s) 215
MnlI CCTC 1 cut(s) 43
Mox20I TGGCCA 1 cut(s) 281
MroXI GAANNNNTTC 2 cut(s) 177, 348
MscI TGGCCA 1 cut(s) 281
MseI TTAA 2 cut(s) 285, 549
MslI CAYNNNNRTG 1 cut(s) 120
Msp20I TGGCCA 1 cut(s) 281
MspA1I CMGCKG 1 cut(s) 251
MwoI GCNNNNNNNGC 3 cut(s) 269, 278, 387
NcoI CCATGG 1 cut(s) 631
NdeII GATC 7 cut(s) 22, 175, 244, 253, 403, 483, 570
NlaIII CATG 3 cut(s) 557, 604, 635
NlaIV GGNNCC 2 cut(s) 246, 572
NmeAIII GCCGAG 1 cut(s) 73
NmuCI GTSAC 1 cut(s) 454
PagI TCATGA 1 cut(s) 553
PciSI GCTCTTC 1 cut(s) 339
PdmI GAANNNNTTC 2 cut(s) 177, 348
PfeI GAWTC 1 cut(s) 194
Psp124BI GAGCTC 2 cut(s) 204, 506
PspN4I GGNNCC 2 cut(s) 246, 572
PsuI RGATCY 4 cut(s) 175, 244, 403, 570
PvuII CAGCTG 1 cut(s) 251
RsaI GTAC 2 cut(s) 230, 580
RsaNI GTAC 2 cut(s) 229, 579
RseI CAYNNNNRTG 1 cut(s) 120
SacI GAGCTC 2 cut(s) 204, 506
SapI GCTCTTC 1 cut(s) 339
SaqAI TTAA 2 cut(s) 285, 549
Sau3AI GATC 7 cut(s) 22, 175, 244, 253, 403, 483, 570
SduI GDGCHC 3 cut(s) 204, 392, 506
SfaNI GCATC 4 cut(s) 14, 34, 250, 517
SfcI CTRYAG 1 cut(s) 382
SmiMI CAYNNNNRTG 1 cut(s) 120
SmlI CTYRAG 1 cut(s) 182
SmoI CTYRAG 1 cut(s) 182
Sse9I AATT 1 cut(s) 561
SsiI CCGC 3 cut(s) 224, 433, 466
SspI AATATT 1 cut(s) 517
SspMI CTAG 2 cut(s) 353, 407
SstI GAGCTC 2 cut(s) 204, 506
StyI CCWWGG 2 cut(s) 393, 631
TaaI ACNGT 2 cut(s) 233, 476
TaqI TCGA 1 cut(s) 318
TasI AATT 1 cut(s) 561
TatI WGTACW 1 cut(s) 578
TfiI GAWTC 1 cut(s) 194
Tru1I TTAA 2 cut(s) 285, 549
Tru9I TTAA 2 cut(s) 285, 549
TscAI CASTG 1 cut(s) 427
TseFI GTSAC 1 cut(s) 454
Tsp45I GTSAC 1 cut(s) 454
TspDTI ATGAA 3 cut(s) 171, 504, 570
TspRI CASTG 1 cut(s) 427
XmnI GAANNNNTTC 2 cut(s) 177, 348
XspI CTAG 2 cut(s) 353, 407
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.