Rw1G004120

Annexin-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr1
OG0001318
Physical Location & Seq
Forward (+)
7721368 .. 7742222
20855 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw1G004120.1

Sequence Viewer

Length: 780 bp
ATGGTGTCCCTCATTACTCCTGATCAATTTTCTGCTAACCAAGATGCAGAGGCTCTCCGAAAGGCGTGTCAAGGTTGGGGGACTAATGAGAAGGCTATCATCTCCATCTTGGGTCAAAGAAAAGAGATCAGGGCAGCTTATGAACAACTTTATCAAGAAGATCTAATCAAGCAATCCAACACTGACTACAATGTCATCATAGAAATGTTCTGCGTTCACTCTCCTGAAGAGCTCGTAGCTGTAAGAAGAGCTTACCAGCTTCGCTACAAGCACTCGTTGGAAGAAGATCTAGCTGCACATACCACCGGTGATATGCGCAAGCTTTTGGTTGCTTTGGTGACTGCTTACCGTTATGACGGTAACGAGATCAATGCAAAGTTGGCAAATTCAGAAGCTGATATTCTCCATGATGCTATCAAAGACAAGGCTTTCAATCATGAAGAAATTATCAGGATCCTGACTAATGATTTCCAGAAGGCATTGCACACAGCCCTTCGATGCCTCAATGACCCCAAGAAGTACTTTGAGAAGATTATATTATCCTCTCAGACTCATATATTACCTGTTATTCAAGGTACTTCGCAATGCAATCAAAAAAGGCTTGGGACCTATGAGGATGCTCTCACTCGTGTAATTGTTACAAGGGCAGAGAGGGACTTGAGGGACATCAAGGAGGTTTACTACAAGAAGAACAGTGTTCCTCTTGAACAGGCTGTGGCCAAAGACACTTCAGGGGACTATAAGGCCTTCCTCCTTACTCTGTTGGGAAAGGAAGATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Annexin

Protein Analysis

259

Amino Acids

29.59

Weight (kDa)

6.2

Isoelectric Point (pI)

36.28

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Annexin PF00191 14 - 57 8.4e-11 Annexin
Annexin PF00191 56 - 112 5.5e-14 Annexin
Annexin PF00191 199 - 254 6e-14 Annexin
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 191
Acc16I TGCGCA 1 cut(s) 317
AclWI GGATC 2 cut(s) 448, 461
AcoI YGGCCR 1 cut(s) 717
AcsI RAATTY 1 cut(s) 385
AcuI CTGAAG 2 cut(s) 246, 714
AfaI GTAC 2 cut(s) 521, 577
AgeI ACCGGT 1 cut(s) 305
AgsI TTSAA 3 cut(s) 433, 572, 707
AluBI AGCT 8 cut(s) 137, 232, 239, 251, 259, 293, 322, 395
AluI AGCT 8 cut(s) 137, 232, 239, 251, 259, 293, 322, 395
Alw21I GWGCWC 1 cut(s) 234
AlwI GGATC 2 cut(s) 448, 461
AlwNI CAGNNNCTG 1 cut(s) 395
AoxI GGCC 2 cut(s) 717, 744
ApeKI GCWGC 2 cut(s) 134, 293
ApoI RAATTY 1 cut(s) 385
ArsI GACNNNNNNTTYG 2 cut(s) 52, 84
AsiGI ACCGGT 1 cut(s) 305
AspLEI GCGC 1 cut(s) 318
AspS9I GGNCC 1 cut(s) 606
AsuHPI GGTGA 2 cut(s) 320, 349
AvaII GGWCC 1 cut(s) 606
BalI TGGCCA 1 cut(s) 719
BamHI GGATCC 1 cut(s) 453
BanII GRGCYC 1 cut(s) 234
BauI CACGAG 1 cut(s) 627
Bbv12I GWGCWC 1 cut(s) 234
BbvI GCAGC 2 cut(s) 146, 280
BccI CCATC 1 cut(s) 113
BcgI CGANNNNNNTGC 2 cut(s) 353, 387
BclI TGATCA 1 cut(s) 22
BfaI CTAG 1 cut(s) 290
BglII AGATCT 2 cut(s) 160, 286
BisI GCNGC 2 cut(s) 135, 294
BlsI GCNGC 2 cut(s) 136, 295
BmcAI AGTACT 1 cut(s) 521
Bme18I GGWCC 1 cut(s) 606
BmgT120I GGNCC 1 cut(s) 606
BmiI GGNNCC 2 cut(s) 455, 607
BmsI GCATC 4 cut(s) 34, 400, 488, 607
BpuEI CTTGAG 1 cut(s) 679
BsaWI WCCGGW 1 cut(s) 305
Bse118I RCCGGY 1 cut(s) 305
Bse3DI GCAATG 2 cut(s) 479, 590
BseGI GGATG 1 cut(s) 622
BseMI GCAATG 2 cut(s) 479, 590
BseMII CTCAG 1 cut(s) 560
BseXI GCAGC 2 cut(s) 146, 280
BsgI GTGCAG 1 cut(s) 279
BshFI GGCC 2 cut(s) 719, 746
BshTI ACCGGT 1 cut(s) 305
BsiHKAI GWGCWC 1 cut(s) 234
BsiSI CCGG 1 cut(s) 306
BslFI GGGAC 5 cut(s) 94, 619, 668, 677, 749
BsmFI GGGAC 5 cut(s) 94, 619, 668, 677, 749
BsnI GGCC 2 cut(s) 719, 746
Bsp1286I GDGCHC 1 cut(s) 234
Bsp143I GATC 6 cut(s) 22, 126, 160, 286, 366, 453
BspANI GGCC 2 cut(s) 719, 746
BspCNI CTCAG 1 cut(s) 559
BspHI TCATGA 1 cut(s) 436
BspLI GGNNCC 2 cut(s) 455, 607
BspPI GGATC 2 cut(s) 448, 461
BspQI GCTCTTC 2 cut(s) 222, 241
BsrDI GCAATG 2 cut(s) 479, 590
BsrFI RCCGGY 1 cut(s) 305
BssAI RCCGGY 1 cut(s) 305
BssMI GATC 6 cut(s) 22, 126, 160, 286, 366, 453
BssSI CACGAG 1 cut(s) 627
Bst2BI CACGAG 1 cut(s) 627
Bst4CI ACNGT 3 cut(s) 350, 359, 695
Bst6I CTCTTC 2 cut(s) 222, 241
BstC8I GCNNGC 1 cut(s) 320
BstDEI CTNAG 1 cut(s) 546
BstF5I GGATG 1 cut(s) 622
BstHHI GCGC 1 cut(s) 318
BstKTI GATC 6 cut(s) 25, 129, 163, 289, 369, 456
BstMBI GATC 6 cut(s) 22, 126, 160, 286, 366, 453
BstMWI GCNNNNNNNGC 1 cut(s) 380
BstV1I GCAGC 2 cut(s) 146, 280
BstX2I RGATCY 3 cut(s) 160, 286, 453
BstYI RGATCY 3 cut(s) 160, 286, 453
BsuRI GGCC 2 cut(s) 719, 746
BtsCI GGATG 1 cut(s) 622
BtsIMutI CAGTG 2 cut(s) 180, 700
Cac8I GCNNGC 1 cut(s) 320
CaiI CAGNNNCTG 1 cut(s) 395
CciI TCATGA 1 cut(s) 436
CfoI GCGC 1 cut(s) 318
Cfr10I RCCGGY 1 cut(s) 305
Cfr13I GGNCC 1 cut(s) 606
Csp6I GTAC 2 cut(s) 520, 576
CspAI ACCGGT 1 cut(s) 305
CviAII CATG 2 cut(s) 407, 437
CviQI GTAC 2 cut(s) 520, 576
DdeI CTNAG 1 cut(s) 546
DpnI GATC 6 cut(s) 24, 128, 162, 288, 368, 455
DpnII GATC 6 cut(s) 22, 126, 160, 286, 366, 453
DrdI GACNNNNNNGTC 1 cut(s) 191
DseDI GACNNNNNNGTC 1 cut(s) 191
EaeI YGGCCR 1 cut(s) 717
Eam1104I CTCTTC 2 cut(s) 222, 241
EarI CTCTTC 2 cut(s) 222, 241
Ecl136II GAGCTC 1 cut(s) 232
Eco147I AGGCCT 1 cut(s) 746
Eco24I GRGCYC 1 cut(s) 234
Eco47I GGWCC 1 cut(s) 606
Eco53kI GAGCTC 1 cut(s) 232
Eco57I CTGAAG 2 cut(s) 246, 714
EcoICRI GAGCTC 1 cut(s) 232
EcoO109I RGGNCCY 1 cut(s) 606
EcoT38I GRGCYC 1 cut(s) 234
FaeI CATG 2 cut(s) 410, 440
FalI AAGNNNNNCTT 4 cut(s) 235, 267, 506, 538
FaqI GGGAC 5 cut(s) 94, 619, 668, 677, 749
FatI CATG 2 cut(s) 406, 436
FbaI TGATCA 1 cut(s) 22
Fnu4HI GCNGC 2 cut(s) 135, 294
FokI GGATG 1 cut(s) 629
FriOI GRGCYC 1 cut(s) 234
Fsp4HI GCNGC 2 cut(s) 135, 294
FspBI CTAG 1 cut(s) 290
FspI TGCGCA 1 cut(s) 317
GlaI GCGC 1 cut(s) 317
GluI GCNGC 2 cut(s) 135, 294
HaeIII GGCC 2 cut(s) 719, 746
HapII CCGG 1 cut(s) 306
HhaI GCGC 1 cut(s) 318
Hin1II CATG 2 cut(s) 410, 440
Hin6I GCGC 1 cut(s) 316
HinP1I GCGC 1 cut(s) 316
HindIII AAGCTT 1 cut(s) 320
HinfI GANTC 1 cut(s) 550
HpaII CCGG 1 cut(s) 306
HphI GGTGA 2 cut(s) 320, 349
Hpy166II GTNNAC 2 cut(s) 217, 679
Hpy188I TCNGA 3 cut(s) 59, 391, 549
Hpy188III TCNNGA 8 cut(s) 20, 155, 224, 437, 451, 457, 472, 704
Hpy8I GTNNAC 2 cut(s) 217, 679
HpyAV CCTTC 4 cut(s) 85, 469, 503, 757
HpyCH4III ACNGT 3 cut(s) 350, 359, 695
HpyCH4V TGCA 5 cut(s) 47, 296, 374, 484, 588
HpyF10VI GCNNNNNNNGC 1 cut(s) 380
HpyF3I CTNAG 1 cut(s) 546
Hsp92II CATG 2 cut(s) 410, 440
HspAI GCGC 1 cut(s) 316
Ksp22I TGATCA 1 cut(s) 22
Kzo9I GATC 6 cut(s) 22, 126, 160, 286, 366, 453
LguI GCTCTTC 2 cut(s) 222, 241
Lsp1109I GCAGC 2 cut(s) 146, 280
LweI GCATC 4 cut(s) 34, 400, 488, 607
MaeI CTAG 1 cut(s) 290
MaeIII GTNAC 3 cut(s) 337, 359, 637
MalI GATC 6 cut(s) 24, 128, 162, 288, 368, 455
MboI GATC 6 cut(s) 22, 126, 160, 286, 366, 453
MboII GAAGA 8 cut(s) 170, 239, 258, 293, 296, 452, 541, 700
MflI RGATCY 3 cut(s) 160, 286, 453
MhlI GDGCHC 1 cut(s) 234
MlsI TGGCCA 1 cut(s) 719
MluCI AATT 4 cut(s) 26, 385, 444, 633
MluNI TGGCCA 1 cut(s) 719
MlyI GAGTC 1 cut(s) 544
MmeI TCCRAC 2 cut(s) 201, 258
Mox20I TGGCCA 1 cut(s) 719
MscI TGGCCA 1 cut(s) 719
MslI CAYNNNNRTG 1 cut(s) 203
Msp20I TGGCCA 1 cut(s) 719
MspI CCGG 1 cut(s) 306
MwoI GCNNNNNNNGC 1 cut(s) 380
NdeII GATC 6 cut(s) 22, 126, 160, 286, 366, 453
NlaIII CATG 2 cut(s) 410, 440
NlaIV GGNNCC 2 cut(s) 455, 607
NmuCI GTSAC 1 cut(s) 337
NsbI TGCGCA 1 cut(s) 317
PagI TCATGA 1 cut(s) 436
PceI AGGCCT 1 cut(s) 746
PciSI GCTCTTC 2 cut(s) 222, 241
PinAI ACCGGT 1 cut(s) 305
PkrI GCNGC 2 cut(s) 136, 295
PleI GAGTC 1 cut(s) 544
PpsI GAGTC 1 cut(s) 544
PpuMI RGGWCCY 1 cut(s) 606
Psp124BI GAGCTC 1 cut(s) 234
Psp5II RGGWCCY 1 cut(s) 606
PspN4I GGNNCC 2 cut(s) 455, 607
PspPI GGNCC 1 cut(s) 606
PspPPI RGGWCCY 1 cut(s) 606
PstNI CAGNNNCTG 1 cut(s) 395
PsuI RGATCY 3 cut(s) 160, 286, 453
RsaI GTAC 2 cut(s) 521, 577
RsaNI GTAC 2 cut(s) 520, 576
RseI CAYNNNNRTG 1 cut(s) 203
SacI GAGCTC 1 cut(s) 234
SapI GCTCTTC 2 cut(s) 222, 241
SatI GCNGC 2 cut(s) 135, 294
Sau3AI GATC 6 cut(s) 22, 126, 160, 286, 366, 453
Sau96I GGNCC 1 cut(s) 606
ScaI AGTACT 1 cut(s) 521
SchI GAGTC 1 cut(s) 544
SduI GDGCHC 1 cut(s) 234
SfaNI GCATC 4 cut(s) 34, 400, 488, 607
SgrAI CRCCGGYG 1 cut(s) 305
SinI GGWCC 1 cut(s) 606
SmiMI CAYNNNNRTG 1 cut(s) 203
SmlI CTYRAG 1 cut(s) 658
SmoI CTYRAG 1 cut(s) 658
Sse9I AATT 4 cut(s) 26, 385, 444, 633
SseBI AGGCCT 1 cut(s) 746
SspMI CTAG 1 cut(s) 290
SstI GAGCTC 1 cut(s) 234
StuI AGGCCT 1 cut(s) 746
TaaI ACNGT 3 cut(s) 350, 359, 695
TaqI TCGA 1 cut(s) 496
TasI AATT 4 cut(s) 26, 385, 444, 633
TatI WGTACW 1 cut(s) 519
TscAI CASTG 2 cut(s) 187, 700
TseFI GTSAC 1 cut(s) 337
TseI GCWGC 2 cut(s) 134, 293
Tsp45I GTSAC 1 cut(s) 337
TspDTI ATGAA 2 cut(s) 156, 453
TspRI CASTG 2 cut(s) 187, 700
VpaK11BI GGWCC 1 cut(s) 606
XapI RAATTY 1 cut(s) 385
XspI CTAG 1 cut(s) 290
ZrmI AGTACT 1 cut(s) 521
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.