Rorug01G0033700

Annexin-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000001
OG0001318
Physical Location & Seq
Reverse (-)
5668231 .. 5668961
731 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug01G0033700.1

Sequence Viewer

Length: 594 bp
ATGGCACCATCAAATTTAAGGTCTAGACATTCTACCCTCGAATTTGTTCAGAAAACCCAAGTGGAATGGAATACTGTACCATGCAGCTATACGGATGAGCCAACGAGTGCTGATGTGCTTAGGATCCAATTTGTATTCGGCAGGTCAACCCAACATGCTATTGGAACCTTTGCAAATGTTTATGAAGGATTTCTTATCAGTAAAGCTGGAAAGTTCATCTCGATCCGTCCTTCTGAGTTATGTAATGAGGATATGGCTAGTGTTAAGCAATCTCATTCCATATGTATGATCGAGGACTTCATTAAAACCGAGTTTCCTGAAGTAAAACCGTCTTCTATTGTGGACAAGGTAATTGAACTAGTTCAGAACTCAATCGGCTCTCCTTTGCCTCCTGATCGTGTTATCGATGTGAAGTCGATAGATGGGCTTGTGATTGTGCATCATACTAATTCTTGCTGGAGCGAAAAGAAATTACATTATAAGATGGACTCTACGAGACATGGAGACTGTGTTTTGTGTTTGGATGACTTTGATGTCGAACTTGACGGAATCTGGATTTTGAGAAGAGCTTGCTTGGTTGGGGTCTTGGACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Annexin

Protein Analysis

197

Amino Acids

22.17

Weight (kDa)

5.47

Isoelectric Point (pI)

53.29

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 480
AasI GACNNNNNNGTC 1 cut(s) 533
Acc36I ACCTGC 1 cut(s) 132
AccB1I GGYRCC 1 cut(s) 4
AclWI GGATC 3 cut(s) 118, 131, 217
AcsI RAATTY 2 cut(s) 13, 41
AcuI CTGAAG 1 cut(s) 339
AfaI GTAC 1 cut(s) 78
AgsI TTSAA 1 cut(s) 356
AhlI ACTAGT 1 cut(s) 358
AluBI AGCT 3 cut(s) 87, 206, 569
AluI AGCT 3 cut(s) 87, 206, 569
Alw26I GTCTC 2 cut(s) 490, 498
AlwI GGATC 3 cut(s) 118, 131, 217
ApeKI GCWGC 1 cut(s) 84
ApoI RAATTY 2 cut(s) 13, 41
ArsI GACNNNNNNTTYG 1 cut(s) 37
Asp700I GAANNNNTTC 3 cut(s) 45, 189, 360
BamHI GGATCC 1 cut(s) 123
BanI GGYRCC 1 cut(s) 4
BbsI GAAGAC 1 cut(s) 324
BbvI GCAGC 1 cut(s) 96
BccI CCATC 3 cut(s) 16, 416, 478
BcoDI GTCTC 2 cut(s) 490, 498
BcuI ACTAGT 1 cut(s) 358
BfaI CTAG 3 cut(s) 24, 258, 359
BfuAI ACCTGC 1 cut(s) 132
BisI GCNGC 1 cut(s) 85
BlsI GCNGC 1 cut(s) 86
BmiI GGNNCC 3 cut(s) 6, 125, 166
BmsI GCATC 1 cut(s) 448
BpiI GAAGAC 1 cut(s) 324
BpmI CTGGAG 1 cut(s) 478
Bpu10I CCTNAGC 1 cut(s) 119
Bsa29I ATCGAT 1 cut(s) 405
BsaXI ACNNNNNCTCC 2 cut(s) 495, 525
BseCI ATCGAT 1 cut(s) 405
BseGI GGATG 2 cut(s) 100, 529
BseMII CTCAG 1 cut(s) 225
BseXI GCAGC 1 cut(s) 96
BshNI GGYRCC 1 cut(s) 4
BshVI ATCGAT 1 cut(s) 405
BsmAI GTCTC 2 cut(s) 490, 498
Bsp143I GATC 4 cut(s) 123, 222, 288, 394
BspCNI CTCAG 1 cut(s) 226
BspDI ATCGAT 1 cut(s) 405
BspLI GGNNCC 3 cut(s) 6, 125, 166
BspMI ACCTGC 1 cut(s) 132
BspPI GGATC 3 cut(s) 118, 131, 217
BspQI GCTCTTC 1 cut(s) 559
BspT107I GGYRCC 1 cut(s) 4
BssMI GATC 4 cut(s) 123, 222, 288, 394
Bst4CI ACNGT 3 cut(s) 76, 330, 509
Bst6I CTCTTC 1 cut(s) 559
BstC8I GCNNGC 1 cut(s) 571
BstDEI CTNAG 2 cut(s) 119, 234
BstF5I GGATG 2 cut(s) 100, 529
BstKTI GATC 4 cut(s) 126, 225, 291, 397
BstMAI GTCTC 2 cut(s) 490, 498
BstMBI GATC 4 cut(s) 123, 222, 288, 394
BstNSI RCATGY 1 cut(s) 158
BstV1I GCAGC 1 cut(s) 96
BstV2I GAAGAC 1 cut(s) 324
BstX2I RGATCY 1 cut(s) 123
BstYI RGATCY 1 cut(s) 123
Bsu15I ATCGAT 1 cut(s) 405
BsuTUI ATCGAT 1 cut(s) 405
BtsCI GGATG 2 cut(s) 100, 529
BveI ACCTGC 1 cut(s) 132
Cac8I GCNNGC 1 cut(s) 571
ClaI ATCGAT 1 cut(s) 405
Csp6I GTAC 1 cut(s) 77
CviAII CATG 3 cut(s) 81, 155, 500
CviJI RGCY 7 cut(s) 87, 100, 206, 257, 378, 427, 569
CviKI_1 RGCY 7 cut(s) 87, 100, 206, 257, 378, 427, 569
CviQI GTAC 1 cut(s) 77
DdeI CTNAG 2 cut(s) 119, 234
DpnI GATC 4 cut(s) 125, 224, 290, 396
DpnII GATC 4 cut(s) 123, 222, 288, 394
DrdI GACNNNNNNGTC 1 cut(s) 533
DseDI GACNNNNNNGTC 1 cut(s) 533
Eam1104I CTCTTC 1 cut(s) 559
EarI CTCTTC 1 cut(s) 559
Eco57I CTGAAG 1 cut(s) 339
FaeI CATG 3 cut(s) 84, 158, 503
FalI AAGNNNNNCTT 2 cut(s) 177, 209
FatI CATG 3 cut(s) 80, 154, 499
FauNDI CATATG 1 cut(s) 281
Fnu4HI GCNGC 1 cut(s) 85
FokI GGATG 2 cut(s) 107, 536
Fsp4HI GCNGC 1 cut(s) 85
FspBI CTAG 3 cut(s) 24, 258, 359
GluI GCNGC 1 cut(s) 85
GsuI CTGGAG 1 cut(s) 478
Hin1II CATG 3 cut(s) 84, 158, 503
HincII GTYRAC 1 cut(s) 147
HindII GTYRAC 1 cut(s) 147
HinfI GANTC 2 cut(s) 488, 549
Hpy166II GTNNAC 2 cut(s) 147, 343
Hpy188I TCNGA 3 cut(s) 51, 235, 366
Hpy188III TCNNGA 5 cut(s) 24, 220, 317, 392, 553
Hpy8I GTNNAC 2 cut(s) 147, 343
HpyAV CCTTC 2 cut(s) 179, 240
HpyCH4III ACNGT 3 cut(s) 76, 330, 509
HpyCH4V TGCA 3 cut(s) 84, 173, 439
HpyF3I CTNAG 2 cut(s) 119, 234
Hsp92II CATG 3 cut(s) 84, 158, 503
Kzo9I GATC 4 cut(s) 123, 222, 288, 394
LguI GCTCTTC 1 cut(s) 559
LmnI GCTCC 1 cut(s) 459
LpnPI CCDG 6 cut(s) 127, 192, 330, 405, 442, 538
Lsp1109I GCAGC 1 cut(s) 96
LweI GCATC 1 cut(s) 448
MaeI CTAG 3 cut(s) 24, 258, 359
MalI GATC 4 cut(s) 125, 224, 290, 396
MboI GATC 4 cut(s) 123, 222, 288, 394
MboII GAAGA 2 cut(s) 324, 576
MflI RGATCY 1 cut(s) 123
MluCI AATT 6 cut(s) 13, 41, 128, 351, 448, 470
MlyI GAGTC 1 cut(s) 482
MnlI CCTC 4 cut(s) 47, 241, 286, 399
MroXI GAANNNNTTC 3 cut(s) 45, 189, 360
MseI TTAA 3 cut(s) 17, 264, 303
MslI CAYNNNNRTG 1 cut(s) 284
NdeI CATATG 1 cut(s) 281
NdeII GATC 4 cut(s) 123, 222, 288, 394
NlaIII CATG 3 cut(s) 84, 158, 503
NlaIV GGNNCC 3 cut(s) 6, 125, 166
NspI RCATGY 1 cut(s) 158
PciSI GCTCTTC 1 cut(s) 559
PdmI GAANNNNTTC 3 cut(s) 45, 189, 360
PfeI GAWTC 1 cut(s) 549
PkrI GCNGC 1 cut(s) 86
PleI GAGTC 1 cut(s) 482
PpsI GAGTC 1 cut(s) 482
PsiI TTATAA 1 cut(s) 480
PspN4I GGNNCC 3 cut(s) 6, 125, 166
PsuI RGATCY 1 cut(s) 123
RsaI GTAC 1 cut(s) 78
RsaNI GTAC 1 cut(s) 77
RseI CAYNNNNRTG 1 cut(s) 284
SapI GCTCTTC 1 cut(s) 559
SaqAI TTAA 3 cut(s) 17, 264, 303
SatI GCNGC 1 cut(s) 85
Sau3AI GATC 4 cut(s) 123, 222, 288, 394
SchI GAGTC 1 cut(s) 482
SetI ASST 7 cut(s) 23, 89, 146, 170, 208, 351, 571
SfaNI GCATC 1 cut(s) 448
SmiMI CAYNNNNRTG 1 cut(s) 284
SpeI ACTAGT 1 cut(s) 358
Sse9I AATT 6 cut(s) 13, 41, 128, 351, 448, 470
SspMI CTAG 3 cut(s) 24, 258, 359
TaaI ACNGT 3 cut(s) 76, 330, 509
TaqI TCGA 6 cut(s) 39, 221, 291, 405, 416, 537
TasI AATT 6 cut(s) 13, 41, 128, 351, 448, 470
TfiI GAWTC 1 cut(s) 549
Tru1I TTAA 3 cut(s) 17, 264, 303
Tru9I TTAA 3 cut(s) 17, 264, 303
TseI GCWGC 1 cut(s) 84
TspDTI ATGAA 3 cut(s) 198, 205, 289
TspGWI ACGGA 3 cut(s) 107, 215, 561
XapI RAATTY 2 cut(s) 13, 41
XbaI TCTAGA 1 cut(s) 23
XceI RCATGY 1 cut(s) 158
XcmI CCANNNNNNNNNTGG 1 cut(s) 158
XmnI GAANNNNTTC 3 cut(s) 45, 189, 360
XspI CTAG 3 cut(s) 24, 258, 359
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.