AT5G38910

germin-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
OG0000812
Physical Location & Seq
Forward (+)
15578749 .. 15579733
985 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G38910.1

Sequence Viewer

Length: 669 bp
ATGAAAAGTTTCTCATTTCTTGCAGTTTTATCTATCTTGGCAATAACACTTTCATTAAGCAAGGCTTCGGACCCAAGCTCTCTTCAGGACTTTTGCGTTGGTGTCAACACCCCAGCAGATGGTGTTTTTGTGAACGGAAAGTTCTGCAAGGACCCGAAGCTCGTCACAGTAGAAGACTTCTTTTTTACAGGGCTCCACGAGGCAAGACCACCTAATCCAAAAACTGGGTCTAACGTAACAGCCGTCAATGTTAACAACCTACCAGGGTTAAACACTCTTGGAATCTCACTTGTCCGTATCGACTATGGAGTTTACGGACAGAACCCACCTCACACCCACCCACGTGCCTCCGAGGTCTTGTATGTCGCGGTTGGAACACTTTTCGTTGGGTTTGTCACGTCAAACCCCGAAAATCGCCTTTTCAGTAAAACACTTTACGAGGGTGATGTCTTTGTGTTTCCACAGGGACTCATTCATTTCCAAGTGAACGTTGGAAAATATCCGGCGGTTGCATTCGCTGGTCTCAGCAGCCAAAACCCTGGTGTCATCACTATTGCTGACACCGTGTTTGGGTCTAACCCACAGATAGACCCAAGTTTTCTTGCAAGTGCATTCCAGGTTGACCCTAAGATTGTCATGGATCTACAGACCAAGTTCATAAAACCATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005618 GO:0005623 GO:0006950 GO:0006970 GO:0008150 GO:0009628 GO:0009651 GO:0030312 GO:0044464 GO:0050896 GO:0071944
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Cupin_1

Protein Analysis

222

Amino Acids

23.88

Weight (kDa)

6.4

Isoelectric Point (pI)

14.93

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Cupin_1 PF00190 65 - 211 6.2e-53 Cupin
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 2 cut(s) 119, 224
AccII CGCG 1 cut(s) 368
AciI CCGC 2 cut(s) 368, 506
AclI AACGTT 1 cut(s) 489
AclWI GGATC 1 cut(s) 648
AcuI CTGAAG 1 cut(s) 68
AcvI CACGTG 1 cut(s) 344
AfiI CCNNNNNNNGG 3 cut(s) 119, 224, 570
AjiI CACGTC 1 cut(s) 399
AjnI CCWGG 3 cut(s) 262, 538, 615
AleI CACNNNNGTG 1 cut(s) 342
AluBI AGCT 2 cut(s) 78, 160
AluI AGCT 2 cut(s) 78, 160
Alw26I GTCTC 1 cut(s) 527
AlwI GGATC 1 cut(s) 648
ApeKI GCWGC 1 cut(s) 528
ArsI GACNNNNNNTTYG 4 cut(s) 212, 244, 551, 583
Asp700I GAANNNNTTC 1 cut(s) 8
AspS9I GGNCC 2 cut(s) 70, 151
AsuHPI GGTGA 1 cut(s) 455
AvaII GGWCC 2 cut(s) 70, 151
BanII GRGCYC 1 cut(s) 195
BauI CACGAG 1 cut(s) 197
BbrPI CACGTG 1 cut(s) 344
BbsI GAAGAC 1 cut(s) 180
BbvI GCAGC 1 cut(s) 540
BccI CCATC 1 cut(s) 113
BceAI ACGGC 1 cut(s) 227
BciT130I CCWGG 3 cut(s) 264, 540, 617
BcoDI GTCTC 1 cut(s) 527
BfmI CTRYAG 1 cut(s) 644
BisI GCNGC 1 cut(s) 529
BlsI GCNGC 1 cut(s) 530
Bme1390I CCNGG 3 cut(s) 264, 540, 617
Bme18I GGWCC 2 cut(s) 70, 151
BmgBI CACGTC 1 cut(s) 399
BmgT120I GGNCC 2 cut(s) 70, 151
BmiI GGNNCC 3 cut(s) 72, 153, 194
BmrFI CCNGG 3 cut(s) 264, 540, 617
BmrI ACTGGG 1 cut(s) 234
BmuI ACTGGG 1 cut(s) 234
BpiI GAAGAC 1 cut(s) 180
BsaAI YACGTR 1 cut(s) 344
BsaI GGTCTC 1 cut(s) 527
BsaJI CCNNGG 3 cut(s) 263, 351, 538
Bsc4I CCNNNNNNNGG 3 cut(s) 119, 224, 570
Bse1I ACTGG 1 cut(s) 229
BseBI CCWGG 3 cut(s) 264, 540, 617
BseDI CCNNGG 3 cut(s) 263, 351, 538
BseLI CCNNNNNNNGG 3 cut(s) 119, 224, 570
BseMII CTCAG 1 cut(s) 538
BseNI ACTGG 1 cut(s) 229
BseXI GCAGC 1 cut(s) 540
BseYI CCCAGC 1 cut(s) 112
Bsh1236I CGCG 1 cut(s) 368
BsiSI CCGG 1 cut(s) 503
BslFI GGGAC 1 cut(s) 480
BslI CCNNNNNNNGG 3 cut(s) 119, 224, 570
BsmAI GTCTC 1 cut(s) 527
BsmFI GGGAC 1 cut(s) 480
BsmI GAATGC 2 cut(s) 512, 611
Bso31I GGTCTC 1 cut(s) 527
Bsp1286I GDGCHC 1 cut(s) 195
Bsp143I GATC 1 cut(s) 640
BspACI CCGC 2 cut(s) 368, 506
BspCNI CTCAG 1 cut(s) 537
BspFNI CGCG 1 cut(s) 368
BspLI GGNNCC 3 cut(s) 72, 153, 194
BspPI GGATC 1 cut(s) 648
BspTNI GGTCTC 1 cut(s) 527
BsrI ACTGG 1 cut(s) 229
BssECI CCNNGG 3 cut(s) 263, 351, 538
BssMI GATC 1 cut(s) 640
BssSI CACGAG 1 cut(s) 197
Bst2BI CACGAG 1 cut(s) 197
Bst2UI CCWGG 3 cut(s) 264, 540, 617
Bst4CI ACNGT 2 cut(s) 169, 565
Bst6I CTCTTC 1 cut(s) 87
BstBAI YACGTR 1 cut(s) 344
BstDEI CTNAG 2 cut(s) 524, 627
BstFNI CGCG 1 cut(s) 368
BstKTI GATC 1 cut(s) 643
BstMAI GTCTC 1 cut(s) 527
BstMBI GATC 1 cut(s) 640
BstNI CCWGG 3 cut(s) 264, 540, 617
BstSCI CCNGG 3 cut(s) 262, 538, 615
BstSFI CTRYAG 1 cut(s) 644
BstUI CGCG 1 cut(s) 368
BstV1I GCAGC 1 cut(s) 540
BstV2I GAAGAC 1 cut(s) 180
BstX2I RGATCY 1 cut(s) 640
BstXI CCANNNNNNTGG 1 cut(s) 539
BstYI RGATCY 1 cut(s) 640
BtrI CACGTC 1 cut(s) 399
Cfr13I GGNCC 2 cut(s) 70, 151
CviAII CATG 1 cut(s) 637
CviJI RGCY 6 cut(s) 65, 78, 160, 193, 242, 531
CviKI_1 RGCY 6 cut(s) 65, 78, 160, 193, 242, 531
DdeI CTNAG 2 cut(s) 524, 627
DpnI GATC 1 cut(s) 642
DpnII GATC 1 cut(s) 640
Eam1104I CTCTTC 1 cut(s) 87
EarI CTCTTC 1 cut(s) 87
Eco24I GRGCYC 1 cut(s) 195
Eco31I GGTCTC 1 cut(s) 527
Eco47I GGWCC 2 cut(s) 70, 151
Eco57I CTGAAG 1 cut(s) 68
Eco72I CACGTG 1 cut(s) 344
EcoO109I RGGNCCY 1 cut(s) 151
EcoRII CCWGG 3 cut(s) 262, 538, 615
EcoT38I GRGCYC 1 cut(s) 195
FaeI CATG 1 cut(s) 640
FaiI YATR 5 cut(s) 306, 363, 638, 659, 667
FalI AAGNNNNNCTT 2 cut(s) 49, 81
FaqI GGGAC 1 cut(s) 480
FatI CATG 1 cut(s) 636
Fnu4HI GCNGC 1 cut(s) 529
FriOI GRGCYC 1 cut(s) 195
Fsp4HI GCNGC 1 cut(s) 529
GluI GCNGC 1 cut(s) 529
GsaI CCCAGC 1 cut(s) 116
HapII CCGG 1 cut(s) 503
Hin1II CATG 1 cut(s) 640
HincII GTYRAC 3 cut(s) 106, 253, 622
HindII GTYRAC 3 cut(s) 106, 253, 622
HinfI GANTC 2 cut(s) 282, 468
HpaI GTTAAC 1 cut(s) 253
HpaII CCGG 1 cut(s) 503
HphI GGTGA 1 cut(s) 455
Hpy166II GTNNAC 6 cut(s) 106, 133, 253, 313, 487, 622
Hpy188I TCNGA 2 cut(s) 70, 352
Hpy188III TCNNGA 1 cut(s) 86
Hpy8I GTNNAC 6 cut(s) 106, 133, 253, 313, 487, 622
HpyCH4III ACNGT 2 cut(s) 169, 565
HpyCH4IV ACGT 4 cut(s) 234, 343, 398, 489
HpyCH4V TGCA 5 cut(s) 23, 147, 512, 605, 611
HpyF3I CTNAG 2 cut(s) 524, 627
HpySE526I ACGT 4 cut(s) 234, 343, 398, 489
Hsp92II CATG 1 cut(s) 640
KspAI GTTAAC 1 cut(s) 253
Kzo9I GATC 1 cut(s) 640
LmnI GCTCC 1 cut(s) 198
Lsp1109I GCAGC 1 cut(s) 540
MaeII ACGT 4 cut(s) 234, 343, 398, 489
MaeIII GTNAC 3 cut(s) 163, 235, 394
MalI GATC 1 cut(s) 642
MboI GATC 1 cut(s) 640
MboII GAAGA 2 cut(s) 74, 185
MflI RGATCY 1 cut(s) 640
MhlI GDGCHC 1 cut(s) 195
MlyI GAGTC 1 cut(s) 462
MmeI TCCRAC 2 cut(s) 352, 472
MnlI CCTC 5 cut(s) 193, 339, 346, 358, 433
MroXI GAANNNNTTC 1 cut(s) 8
MseI TTAA 3 cut(s) 56, 252, 269
MslI CAYNNNNRTG 1 cut(s) 342
MspI CCGG 1 cut(s) 503
MspR9I CCNGG 3 cut(s) 264, 540, 617
Mva1269I GAATGC 2 cut(s) 512, 611
MvaI CCWGG 3 cut(s) 264, 540, 617
MvnI CGCG 1 cut(s) 368
NdeII GATC 1 cut(s) 640
NlaIII CATG 1 cut(s) 640
NlaIV GGNNCC 3 cut(s) 72, 153, 194
NmuCI GTSAC 2 cut(s) 163, 394
OliI CACNNNNGTG 1 cut(s) 342
PcsI WCGNNNNNNNCGW 1 cut(s) 240
PctI GAATGC 2 cut(s) 512, 611
PdmI GAANNNNTTC 1 cut(s) 8
PfeI GAWTC 1 cut(s) 282
PflMI CCANNNNNTGG 2 cut(s) 119, 224
PkrI GCNGC 1 cut(s) 530
PleI GAGTC 1 cut(s) 462
PmaCI CACGTG 1 cut(s) 344
PmlI CACGTG 1 cut(s) 344
PpsI GAGTC 1 cut(s) 462
Ppu21I YACGTR 1 cut(s) 344
PpuMI RGGWCCY 1 cut(s) 151
Psp1406I AACGTT 1 cut(s) 489
Psp5II RGGWCCY 1 cut(s) 151
Psp6I CCWGG 3 cut(s) 262, 538, 615
PspCI CACGTG 1 cut(s) 344
PspFI CCCAGC 1 cut(s) 112
PspGI CCWGG 3 cut(s) 262, 538, 615
PspN4I GGNNCC 3 cut(s) 72, 153, 194
PspPI GGNCC 2 cut(s) 70, 151
PspPPI RGGWCCY 1 cut(s) 151
PsuI RGATCY 1 cut(s) 640
RseI CAYNNNNRTG 1 cut(s) 342
SaqAI TTAA 3 cut(s) 56, 252, 269
SatI GCNGC 1 cut(s) 529
Sau3AI GATC 1 cut(s) 640
Sau96I GGNCC 2 cut(s) 70, 151
SchI GAGTC 1 cut(s) 462
ScrFI CCNGG 3 cut(s) 264, 540, 617
SduI GDGCHC 1 cut(s) 195
SfcI CTRYAG 1 cut(s) 644
SinI GGWCC 2 cut(s) 70, 151
SmiMI CAYNNNNRTG 1 cut(s) 342
SsiI CCGC 2 cut(s) 368, 506
StyD4I CCNGG 3 cut(s) 262, 538, 615
TaaI ACNGT 2 cut(s) 169, 565
TaiI ACGT 4 cut(s) 237, 346, 401, 492
TaqI TCGA 1 cut(s) 300
TfiI GAWTC 1 cut(s) 282
Tru1I TTAA 3 cut(s) 56, 252, 269
Tru9I TTAA 3 cut(s) 56, 252, 269
TseFI GTSAC 2 cut(s) 163, 394
TseI GCWGC 1 cut(s) 528
Tsp45I GTSAC 2 cut(s) 163, 394
TspDTI ATGAA 4 cut(s) 17, 42, 464, 646
TspGWI ACGGA 3 cut(s) 150, 284, 330
Van91I CCANNNNNTGG 2 cut(s) 119, 224
VpaK11BI GGWCC 2 cut(s) 70, 151
XcmI CCANNNNNNNNNTGG 1 cut(s) 488
XmnI GAANNNNTTC 1 cut(s) 8
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.