Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb3

Orthogroup ID

OG0000812

Physical Location & Seq

Genomic Coordinates Reverse (-)

6357025 .. 6357775

Gene Structure 751 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_3g10670.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 648 bp

ATGGCCTCTCAGTTTCTGTTGGTGGCGTTCCTTGCCATAACTTGTTCCGTTGCTATTGCTTCTGACCCAAGTTCTCTTCAGGACTTTTGTGTGGCTGAGCCTACAAGCTCAGTACCAGTGAATGGACATGTGTGCAAGGACCCCAAGCTAGTTGGAGCCAACGACTTCTTCTTCAGTGGACTTCACCTAGCAGGCAACACATCAAACCCTGCTGGTTCAAAGGTGACCCCTGCGACCGTAACCCAAATTCCAGGACTTAATACTTTCGGCATCTCCCTTGTTCGCATCGACTATGCACCAATGGGCATAAATCCTCCACACACTCATCCTAGAGCCACTGAAATCTTGACAGTGGTGGAAGGTAGCCTAGAAGTGGGTTTTGTCACCTCCAACCCTGAAAACCGTCTCATCTCCAAGGTGCTACAGAAGGGTGATGTGTTTGTCTTCCCTGTAGGACTAGCGCATTTCCAGCACAATATTTGGAATAGTAATGCGGTTGCCATTGCAGCTCTCAGCAGCCAAAATCCAGGTGCTATTACCCTTGCCAACGCAGTGTTCGGATCAAAGCCAGACATCTCTGCCGATGTTCTTGCAAAGGCTTTCCAAGTGGATAAGAACATTGTCTTCAATTTTCAAGAAAAGTTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cupin_1

Protein Analysis

216

Amino Acids

22.72

Weight (kDa)

6.02

Isoelectric Point (pI)

24.19

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Cupin_1	PF00190	61 - 207	4.7e-51	Cupin
Cupin_2	PF07883	96 - 166	1.9e-07	Cupin domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000812)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G38910 AT5G38910 AT5G38950
fragaria_vesca	FvH4_3g10650 FvH4_3g10650 FvH4_3g10670 FvH4_5g18471
malus_domestica	MD05G1269600.v1.1 MD05G1269700.v1.1 MD10G1247900.v1.1 MD10G1248200.v1.1 MD10G1248300.v1.1
prunus_persica	Prupe.4G094800_v2.0.a1 Prupe.4G094900_v2.0.a1 Prupe.4G095000_v2.0.a1 Prupe.4G095100_v2.0.a1 Prupe.4G095200_v2.0.a1
pyrus_communis	pycom05g25250
rosa_chinensis	RchiOBHm_Chr5g0009491 RchiOBHm_Chr5g0017351 RchiOBHm_Chr5g0017361 RchiOBHm_Chr5g0017381
rosa_laevigata	RLG00000031666 RLG00000032277 RLG00000032278 RLG00000032279 RLG00000032280
rosa_multiflora	Rmu_co8212706.1_g000001 Rmu_co8318621.1_g000001 Rmu_sc0002711.1_g000013 Rmu_sc0005223.1_g000003 Rmu_sc0005223.1_g000004 Rmu_sc0005319.1_g000002 Rmu_sc0005319.1_g000003 Rmu_sc0005319.1_g000005 Rmu_sc0005319.1_g000006 Rmu_sc0017540.1_g000001
rosa_roxburghii	Rroxscaffold_1G00060000 Rroxscaffold_1G00060010
rosa_rugosa	Rorug04G0443600 Rorug05G0034300 Rorug05G0034300 Rorug05G0034300 Rorug05G0034400 Rorug05G0034700
rosa_samantha	Rh5AG074600 Rh5AG129400 Rh5AG129500 Rh5AG129700 Rh5AG129800 Rh5BG070400 Rh5BG127300 Rh5BG127400 Rh5BG127600 Rh5CG082800 Rh5CG140000 Rh5CG140100 Rh5CG140200 Rh5CG140400 Rh5DG070600 Rh5DG129700 Rh5DG129800 Rh5DG129900 Rh5DG130000
rosa_wichuraiana	Rw5G006910 Rw5G011180 Rw5G011190 Rw5G011200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	122
AciI	CCGC	1 cut(s)	494
AclWI	GGATC	1 cut(s)	568
AcsI	RAATTY	1 cut(s)	246
AcuI	CTGAAG	2 cut(s)	62, 157
AfaI	GTAC	1 cut(s)	114
AfiI	CCNNNNNNNGG	2 cut(s)	122, 373
AflIII	ACRYGT	1 cut(s)	127
AgsI	TTSAA	3 cut(s)	219, 628, 635
AjnI	CCWGG	2 cut(s)	250, 526
AjuI	GAANNNNNNNTTGG	4 cut(s)	152, 184, 539, 571
AluBI	AGCT	3 cut(s)	108, 148, 509
AluI	AGCT	3 cut(s)	108, 148, 509
Alw26I	GTCTC	1 cut(s)	410
AlwI	GGATC	1 cut(s)	568
AlwNI	CAGNNNCTG	1 cut(s)	16
AoxI	GGCC	1 cut(s)	3
ApeKI	GCWGC	2 cut(s)	506, 516
ApoI	RAATTY	1 cut(s)	246
AspLEI	GCGC	1 cut(s)	463
AspS9I	GGNCC	1 cut(s)	139
AsuHPI	GGTGA	4 cut(s)	176, 235, 376, 443
AvaII	GGWCC	1 cut(s)	139
BbsI	GAAGAC	2 cut(s)	436, 616
BbvI	GCAGC	2 cut(s)	518, 528
BcgI	CGANNNNNNTGC	2 cut(s)	572, 606
BciT130I	CCWGG	2 cut(s)	252, 528
BcoDI	GTCTC	1 cut(s)	410
BfaI	CTAG	5 cut(s)	149, 188, 330, 368, 458
BfmI	CTRYAG	2 cut(s)	422, 450
BisI	GCNGC	2 cut(s)	507, 517
BlpI	GCTNAGC	1 cut(s)	96
BlsI	GCNGC	2 cut(s)	508, 518
Bme1390I	CCNGG	2 cut(s)	252, 528
Bme18I	GGWCC	1 cut(s)	139
BmgT120I	GGNCC	1 cut(s)	139
BmiI	GGNNCC	2 cut(s)	141, 157
BmrFI	CCNGG	2 cut(s)	252, 528
BmsI	GCATC	2 cut(s)	279, 294
BpiI	GAAGAC	2 cut(s)	436, 616
Bpu1102I	GCTNAGC	1 cut(s)	96
BsaJI	CCNNGG	1 cut(s)	414
Bsc4I	CCNNNNNNNGG	2 cut(s)	122, 373
Bse1I	ACTGG	1 cut(s)	116
Bse3DI	GCAATG	1 cut(s)	501
BseBI	CCWGG	2 cut(s)	252, 528
BseDI	CCNNGG	1 cut(s)	414
BseGI	GGATG	1 cut(s)	325
BseLI	CCNNNNNNNGG	2 cut(s)	122, 373
BseMI	GCAATG	1 cut(s)	501
BseMII	CTCAG	4 cut(s)	23, 87, 123, 526
BseNI	ACTGG	1 cut(s)	116
BseXI	GCAGC	2 cut(s)	518, 528
Bsh1285I	CGRYCG	1 cut(s)	237
BshFI	GGCC	1 cut(s)	5
BsiEI	CGRYCG	1 cut(s)	237
BslI	CCNNNNNNNGG	2 cut(s)	122, 373
BsmAI	GTCTC	1 cut(s)	410
BsmBI	CGTCTC	1 cut(s)	410
BsnI	GGCC	1 cut(s)	5
Bsp143I	GATC	1 cut(s)	560
Bsp1720I	GCTNAGC	1 cut(s)	96
BspACI	CCGC	1 cut(s)	494
BspANI	GGCC	1 cut(s)	5
BspCNI	CTCAG	4 cut(s)	22, 88, 122, 525
BspLI	GGNNCC	2 cut(s)	141, 157
BspPI	GGATC	1 cut(s)	568
BsrDI	GCAATG	1 cut(s)	501
BsrI	ACTGG	1 cut(s)	116
BssECI	CCNNGG	1 cut(s)	414
BssMI	GATC	1 cut(s)	560
BssT1I	CCWWGG	1 cut(s)	414
Bst2UI	CCWGG	2 cut(s)	252, 528
Bst4CI	ACNGT	3 cut(s)	238, 352, 404
Bst6I	CTCTTC	1 cut(s)	81
BstC8I	GCNNGC	1 cut(s)	193
BstDEI	CTNAG	4 cut(s)	9, 96, 109, 512
BstEII	GGTNACC	1 cut(s)	223
BstF5I	GGATG	1 cut(s)	325
BstHHI	GCGC	1 cut(s)	463
BstKTI	GATC	1 cut(s)	563
BstMAI	GTCTC	1 cut(s)	410
BstMBI	GATC	1 cut(s)	560
BstMCI	CGRYCG	1 cut(s)	237
BstMWI	GCNNNNNNNGC	3 cut(s)	32, 469, 506
BstNI	CCWGG	2 cut(s)	252, 528
BstNSI	RCATGY	1 cut(s)	131
BstPI	GGTNACC	1 cut(s)	223
BstSCI	CCNGG	2 cut(s)	250, 526
BstSFI	CTRYAG	2 cut(s)	422, 450
BstV1I	GCAGC	2 cut(s)	518, 528
BstV2I	GAAGAC	2 cut(s)	436, 616
BsuRI	GGCC	1 cut(s)	5
BtsCI	GGATG	1 cut(s)	325
BtsI	GCAGTG	1 cut(s)	558
BtsIMutI	CAGTG	5 cut(s)	123, 181, 336, 357, 558
Cac8I	GCNNGC	1 cut(s)	193
CaiI	CAGNNNCTG	1 cut(s)	16
CfoI	GCGC	1 cut(s)	463
Cfr13I	GGNCC	1 cut(s)	139
Csp6I	GTAC	1 cut(s)	113
CviAII	CATG	1 cut(s)	128
CviQI	GTAC	1 cut(s)	113
DdeI	CTNAG	4 cut(s)	9, 96, 109, 512
DpnI	GATC	1 cut(s)	562
DpnII	GATC	1 cut(s)	560
Eam1104I	CTCTTC	1 cut(s)	81
EarI	CTCTTC	1 cut(s)	81
Eco130I	CCWWGG	1 cut(s)	414
Eco47I	GGWCC	1 cut(s)	139
Eco57I	CTGAAG	2 cut(s)	62, 157
Eco91I	GGTNACC	1 cut(s)	223
EcoO109I	RGGNCCY	1 cut(s)	139
EcoO65I	GGTNACC	1 cut(s)	223
EcoRII	CCWGG	2 cut(s)	250, 526
EcoT14I	CCWWGG	1 cut(s)	414
ErhI	CCWWGG	1 cut(s)	414
Esp3I	CGTCTC	1 cut(s)	410
FaeI	CATG	1 cut(s)	131
FaiI	YATR	4 cut(s)	38, 129, 294, 308
FatI	CATG	1 cut(s)	127
Fnu4HI	GCNGC	2 cut(s)	507, 517
FokI	GGATG	1 cut(s)	312
Fsp4HI	GCNGC	2 cut(s)	507, 517
FspBI	CTAG	5 cut(s)	149, 188, 330, 368, 458
GlaI	GCGC	1 cut(s)	462
GluI	GCNGC	2 cut(s)	507, 517
HaeIII	GGCC	1 cut(s)	5
HhaI	GCGC	1 cut(s)	463
Hin1II	CATG	1 cut(s)	131
Hin6I	GCGC	1 cut(s)	461
HinP1I	GCGC	1 cut(s)	461
HphI	GGTGA	4 cut(s)	176, 235, 376, 443
Hpy166II	GTNNAC	1 cut(s)	179
Hpy188I	TCNGA	2 cut(s)	64, 560
Hpy188III	TCNNGA	3 cut(s)	80, 346, 635
Hpy8I	GTNNAC	1 cut(s)	179
HpyAV	CCTTC	2 cut(s)	353, 421
HpyCH4III	ACNGT	3 cut(s)	238, 352, 404
HpyCH4V	TGCA	4 cut(s)	135, 296, 506, 593
HpyF10VI	GCNNNNNNNGC	3 cut(s)	32, 469, 506
HpyF3I	CTNAG	4 cut(s)	9, 96, 109, 512
Hsp92II	CATG	1 cut(s)	131
HspAI	GCGC	1 cut(s)	461
Kzo9I	GATC	1 cut(s)	560
LmnI	GCTCC	1 cut(s)	155
Lsp1109I	GCAGC	2 cut(s)	518, 528
LweI	GCATC	2 cut(s)	279, 294
MaeI	CTAG	5 cut(s)	149, 188, 330, 368, 458
MaeIII	GTNAC	3 cut(s)	223, 238, 382
MalI	GATC	1 cut(s)	562
MboI	GATC	1 cut(s)	560
MboII	GAAGA	5 cut(s)	68, 160, 163, 436, 616
MluCI	AATT	2 cut(s)	246, 628
MmeI	TCCRAC	2 cut(s)	133, 414
MnlI	CCTC	3 cut(s)	16, 324, 397
MseI	TTAA	2 cut(s)	258, 646
MspR9I	CCNGG	2 cut(s)	252, 528
MvaI	CCWGG	2 cut(s)	252, 528
MwoI	GCNNNNNNNGC	3 cut(s)	32, 469, 506
NdeII	GATC	1 cut(s)	560
NlaIII	CATG	1 cut(s)	131
NlaIV	GGNNCC	2 cut(s)	141, 157
NmuCI	GTSAC	2 cut(s)	223, 382
NspI	RCATGY	1 cut(s)	131
PciI	ACATGT	1 cut(s)	127
PflMI	CCANNNNNTGG	1 cut(s)	122
PfoI	TCCNGGA	1 cut(s)	250
PkrI	GCNGC	2 cut(s)	508, 518
PpuMI	RGGWCCY	1 cut(s)	139
PscI	ACATGT	1 cut(s)	127
Psp5II	RGGWCCY	1 cut(s)	139
Psp6I	CCWGG	2 cut(s)	250, 526
PspEI	GGTNACC	1 cut(s)	223
PspGI	CCWGG	2 cut(s)	250, 526
PspN4I	GGNNCC	2 cut(s)	141, 157
PspPI	GGNCC	1 cut(s)	139
PspPPI	RGGWCCY	1 cut(s)	139
PstNI	CAGNNNCTG	1 cut(s)	16
RsaI	GTAC	1 cut(s)	114
RsaNI	GTAC	1 cut(s)	113
SaqAI	TTAA	2 cut(s)	258, 646
SatI	GCNGC	2 cut(s)	507, 517
Sau3AI	GATC	1 cut(s)	560
Sau96I	GGNCC	1 cut(s)	139
ScrFI	CCNGG	2 cut(s)	252, 528
SetI	ASST	9 cut(s)	110, 150, 189, 225, 364, 389, 420, 511, 532
SfaNI	GCATC	2 cut(s)	279, 294
SfcI	CTRYAG	2 cut(s)	422, 450
SinI	GGWCC	1 cut(s)	139
Sse9I	AATT	2 cut(s)	246, 628
SsiI	CCGC	1 cut(s)	494
SspI	AATATT	1 cut(s)	478
SspMI	CTAG	5 cut(s)	149, 188, 330, 368, 458
StyD4I	CCNGG	2 cut(s)	250, 526
StyI	CCWWGG	1 cut(s)	414
TaaI	ACNGT	3 cut(s)	238, 352, 404
TaqI	TCGA	1 cut(s)	288
TasI	AATT	2 cut(s)	246, 628
Tru1I	TTAA	2 cut(s)	258, 646
Tru9I	TTAA	2 cut(s)	258, 646
TscAI	CASTG	5 cut(s)	123, 181, 343, 357, 558
TseFI	GTSAC	2 cut(s)	223, 382
TseI	GCWGC	2 cut(s)	506, 516
Tsp45I	GTSAC	2 cut(s)	223, 382
TspGWI	ACGGA	1 cut(s)	37
TspRI	CASTG	5 cut(s)	123, 181, 343, 357, 558
Van91I	CCANNNNNTGG	1 cut(s)	122
VpaK11BI	GGWCC	1 cut(s)	139
XapI	RAATTY	1 cut(s)	246
XceI	RCATGY	1 cut(s)	131
XspI	CTAG	5 cut(s)	149, 188, 330, 368, 458

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.