Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8318621.1

Orthogroup ID

OG0000812

Physical Location & Seq

Genomic Coordinates Reverse (-)

2 .. 586

Gene Structure 585 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8318621.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 487 bp

atggcctctcagcttctattgttggcattccttgccataacttgttccgttgctcttgcttctgacccaagctctcttcaggacttttgtgtggctgagcctacaagctcagtaccagtgaatggacatgtgtgcaaggaccccaagcttgtcgaagccaatgacttcttcctcagtggactgcacctagcaggcaacacatcaaaccctgctggttcgaaggtgacccctgctaatgtagcccagattccaggactcaacacttttggtatctccctagttcgtatcgactatgcaccagggggtataaatgctccacacactcatcctagagctactgaaatcttgacagtggttgaaggtagcctagaagtgggttttgtcacctccaaccctgaaaaccgtctcatctccaaggtgcttcagaagggtgatgtgtttgtgttcccagtaggactagcgcatttccagcacaatgttggaaaag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cupin_1

Protein Analysis

162

Amino Acids

16.97

Weight (kDa)

6.02

Isoelectric Point (pI)

27.46

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000812)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G38910 AT5G38910 AT5G38950
fragaria_vesca	FvH4_3g10650 FvH4_3g10650 FvH4_3g10670 FvH4_5g18471
malus_domestica	MD05G1269600.v1.1 MD05G1269700.v1.1 MD10G1247900.v1.1 MD10G1248200.v1.1 MD10G1248300.v1.1
prunus_persica	Prupe.4G094800_v2.0.a1 Prupe.4G094900_v2.0.a1 Prupe.4G095000_v2.0.a1 Prupe.4G095100_v2.0.a1 Prupe.4G095200_v2.0.a1
pyrus_communis	pycom05g25250
rosa_chinensis	RchiOBHm_Chr5g0009491 RchiOBHm_Chr5g0017351 RchiOBHm_Chr5g0017361 RchiOBHm_Chr5g0017381
rosa_laevigata	RLG00000031666 RLG00000032277 RLG00000032278 RLG00000032279 RLG00000032280
rosa_multiflora	Rmu_co8212706.1_g000001 Rmu_co8318621.1_g000001 Rmu_sc0002711.1_g000013 Rmu_sc0005223.1_g000003 Rmu_sc0005223.1_g000004 Rmu_sc0005319.1_g000002 Rmu_sc0005319.1_g000003 Rmu_sc0005319.1_g000005 Rmu_sc0005319.1_g000006 Rmu_sc0017540.1_g000001
rosa_roxburghii	Rroxscaffold_1G00060000 Rroxscaffold_1G00060010
rosa_rugosa	Rorug04G0443600 Rorug05G0034300 Rorug05G0034300 Rorug05G0034300 Rorug05G0034400 Rorug05G0034700
rosa_samantha	Rh5AG074600 Rh5AG129400 Rh5AG129500 Rh5AG129700 Rh5AG129800 Rh5BG070400 Rh5BG127300 Rh5BG127400 Rh5BG127600 Rh5CG082800 Rh5CG140000 Rh5CG140100 Rh5CG140200 Rh5CG140400 Rh5DG070600 Rh5DG129700 Rh5DG129800 Rh5DG129900 Rh5DG130000
rosa_wichuraiana	Rw5G006910 Rw5G011180 Rw5G011190 Rw5G011200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	122
AcuI	CTGAAG	2 cut(s)	62, 407
AfaI	GTAC	1 cut(s)	114
AfiI	CCNNNNNNNGG	2 cut(s)	122, 373
AflIII	ACRYGT	1 cut(s)	127
AgsI	TTSAA	1 cut(s)	359
AjnI	CCWGG	2 cut(s)	250, 298
AjuI	GAANNNNNNNTTGG	2 cut(s)	152, 184
AluBI	AGCT	5 cut(s)	13, 72, 108, 148, 335
AluI	AGCT	5 cut(s)	13, 72, 108, 148, 335
Alw26I	GTCTC	1 cut(s)	410
AoxI	GGCC	1 cut(s)	3
AspLEI	GCGC	1 cut(s)	463
AspS9I	GGNCC	1 cut(s)	139
AsuHPI	GGTGA	3 cut(s)	235, 376, 443
AsuII	TTCGAA	1 cut(s)	218
AvaII	GGWCC	1 cut(s)	139
BciT130I	CCWGG	2 cut(s)	252, 300
BcoDI	GTCTC	1 cut(s)	410
BfaI	CTAG	5 cut(s)	188, 278, 330, 368, 458
BlpI	GCTNAGC	1 cut(s)	96
Bme1390I	CCNGG	2 cut(s)	252, 300
Bme18I	GGWCC	1 cut(s)	139
BmgT120I	GGNCC	1 cut(s)	139
BmiI	GGNNCC	1 cut(s)	141
BmrFI	CCNGG	2 cut(s)	252, 300
BmrI	ACTGGG	1 cut(s)	443
BmuI	ACTGGG	1 cut(s)	443
Bpu1102I	GCTNAGC	1 cut(s)	96
Bpu14I	TTCGAA	1 cut(s)	218
BsaJI	CCNNGG	2 cut(s)	299, 414
Bsc4I	CCNNNNNNNGG	2 cut(s)	122, 373
Bse1I	ACTGG	2 cut(s)	116, 449
BseBI	CCWGG	2 cut(s)	252, 300
BseDI	CCNNGG	2 cut(s)	299, 414
BseGI	GGATG	1 cut(s)	325
BseLI	CCNNNNNNNGG	2 cut(s)	122, 373
BseMII	CTCAG	4 cut(s)	23, 87, 123, 187
BseNI	ACTGG	2 cut(s)	116, 449
BsgI	GTGCAG	1 cut(s)	167
BshFI	GGCC	1 cut(s)	5
BslI	CCNNNNNNNGG	2 cut(s)	122, 373
BsmAI	GTCTC	1 cut(s)	410
BsmBI	CGTCTC	1 cut(s)	410
BsmI	GAATGC	1 cut(s)	26
BsnI	GGCC	1 cut(s)	5
Bsp119I	TTCGAA	1 cut(s)	218
Bsp1720I	GCTNAGC	1 cut(s)	96
BspANI	GGCC	1 cut(s)	5
BspCNI	CTCAG	4 cut(s)	22, 88, 122, 186
BspLI	GGNNCC	1 cut(s)	141
BspT104I	TTCGAA	1 cut(s)	218
BsrI	ACTGG	2 cut(s)	116, 449
BssECI	CCNNGG	2 cut(s)	299, 414
BssT1I	CCWWGG	1 cut(s)	414
Bst2UI	CCWGG	2 cut(s)	252, 300
Bst4CI	ACNGT	2 cut(s)	352, 404
Bst6I	CTCTTC	1 cut(s)	81
BstAPI	GCANNNNNTGC	1 cut(s)	32
BstBI	TTCGAA	1 cut(s)	218
BstC8I	GCNNGC	1 cut(s)	193
BstDEI	CTNAG	4 cut(s)	9, 96, 109, 173
BstEII	GGTNACC	1 cut(s)	223
BstF5I	GGATG	1 cut(s)	325
BstHHI	GCGC	1 cut(s)	463
BstMAI	GTCTC	1 cut(s)	410
BstMWI	GCNNNNNNNGC	3 cut(s)	32, 239, 469
BstNI	CCWGG	2 cut(s)	252, 300
BstNSI	RCATGY	1 cut(s)	131
BstPI	GGTNACC	1 cut(s)	223
BstSCI	CCNGG	2 cut(s)	250, 298
BsuRI	GGCC	1 cut(s)	5
BtsCI	GGATG	1 cut(s)	325
BtsIMutI	CAGTG	3 cut(s)	123, 181, 357
Cac8I	GCNNGC	1 cut(s)	193
CfoI	GCGC	1 cut(s)	463
Cfr13I	GGNCC	1 cut(s)	139
Csp6I	GTAC	1 cut(s)	113
CviAII	CATG	1 cut(s)	128
CviQI	GTAC	1 cut(s)	113
DdeI	CTNAG	4 cut(s)	9, 96, 109, 173
Eam1104I	CTCTTC	1 cut(s)	81
EarI	CTCTTC	1 cut(s)	81
Eco130I	CCWWGG	1 cut(s)	414
Eco47I	GGWCC	1 cut(s)	139
Eco57I	CTGAAG	2 cut(s)	62, 407
Eco91I	GGTNACC	1 cut(s)	223
EcoO109I	RGGNCCY	1 cut(s)	139
EcoO65I	GGTNACC	1 cut(s)	223
EcoRII	CCWGG	2 cut(s)	250, 298
EcoT14I	CCWWGG	1 cut(s)	414
ErhI	CCWWGG	1 cut(s)	414
Esp3I	CGTCTC	1 cut(s)	410
FaeI	CATG	1 cut(s)	131
FaiI	YATR	4 cut(s)	38, 129, 294, 308
FatI	CATG	1 cut(s)	127
FokI	GGATG	1 cut(s)	312
FspBI	CTAG	5 cut(s)	188, 278, 330, 368, 458
GlaI	GCGC	1 cut(s)	462
HaeIII	GGCC	1 cut(s)	5
HhaI	GCGC	1 cut(s)	463
Hin1II	CATG	1 cut(s)	131
Hin6I	GCGC	1 cut(s)	461
HinP1I	GCGC	1 cut(s)	461
HindIII	AAGCTT	1 cut(s)	146
HinfI	GANTC	2 cut(s)	247, 255
HphI	GGTGA	3 cut(s)	235, 376, 443
Hpy166II	GTNNAC	1 cut(s)	179
Hpy188I	TCNGA	2 cut(s)	64, 426
Hpy188III	TCNNGA	2 cut(s)	80, 346
Hpy8I	GTNNAC	1 cut(s)	179
HpyAV	CCTTC	3 cut(s)	214, 353, 421
HpyCH4III	ACNGT	2 cut(s)	352, 404
HpyCH4V	TGCA	3 cut(s)	135, 184, 296
HpyF10VI	GCNNNNNNNGC	3 cut(s)	32, 239, 469
HpyF3I	CTNAG	4 cut(s)	9, 96, 109, 173
Hsp92II	CATG	1 cut(s)	131
HspAI	GCGC	1 cut(s)	461
LmnI	GCTCC	1 cut(s)	319
MaeI	CTAG	5 cut(s)	188, 278, 330, 368, 458
MaeIII	GTNAC	2 cut(s)	223, 382
MboII	GAAGA	2 cut(s)	68, 160
MlyI	GAGTC	1 cut(s)	249
MmeI	TCCRAC	2 cut(s)	414, 460
MnlI	CCTC	3 cut(s)	16, 182, 397
MspR9I	CCNGG	2 cut(s)	252, 300
Mva1269I	GAATGC	1 cut(s)	26
MvaI	CCWGG	2 cut(s)	252, 300
MwoI	GCNNNNNNNGC	3 cut(s)	32, 239, 469
NlaIII	CATG	1 cut(s)	131
NlaIV	GGNNCC	1 cut(s)	141
NmuCI	GTSAC	2 cut(s)	223, 382
NspI	RCATGY	1 cut(s)	131
NspV	TTCGAA	1 cut(s)	218
PciI	ACATGT	1 cut(s)	127
PctI	GAATGC	1 cut(s)	26
PfeI	GAWTC	1 cut(s)	247
PflMI	CCANNNNNTGG	1 cut(s)	122
PfoI	TCCNGGA	1 cut(s)	250
PleI	GAGTC	1 cut(s)	249
PpsI	GAGTC	1 cut(s)	249
PpuMI	RGGWCCY	1 cut(s)	139
PscI	ACATGT	1 cut(s)	127
Psp5II	RGGWCCY	1 cut(s)	139
Psp6I	CCWGG	2 cut(s)	250, 298
PspEI	GGTNACC	1 cut(s)	223
PspGI	CCWGG	2 cut(s)	250, 298
PspN4I	GGNNCC	1 cut(s)	141
PspPI	GGNCC	1 cut(s)	139
PspPPI	RGGWCCY	1 cut(s)	139
RsaI	GTAC	1 cut(s)	114
RsaNI	GTAC	1 cut(s)	113
Sau96I	GGNCC	1 cut(s)	139
SchI	GAGTC	1 cut(s)	249
ScrFI	CCNGG	2 cut(s)	252, 300
SfuI	TTCGAA	1 cut(s)	218
SinI	GGWCC	1 cut(s)	139
SspMI	CTAG	5 cut(s)	188, 278, 330, 368, 458
StyD4I	CCNGG	2 cut(s)	250, 298
StyI	CCWWGG	1 cut(s)	414
TaaI	ACNGT	2 cut(s)	352, 404
TaqI	TCGA	3 cut(s)	153, 218, 288
TfiI	GAWTC	1 cut(s)	247
TscAI	CASTG	3 cut(s)	123, 181, 357
TseFI	GTSAC	2 cut(s)	223, 382
Tsp45I	GTSAC	2 cut(s)	223, 382
TspGWI	ACGGA	1 cut(s)	37
TspRI	CASTG	3 cut(s)	123, 181, 357
Van91I	CCANNNNNTGG	1 cut(s)	122
VpaK11BI	GGWCC	1 cut(s)	139
XceI	RCATGY	1 cut(s)	131
XcmI	CCANNNNNNNNNTGG	1 cut(s)	476
XspI	CTAG	5 cut(s)	188, 278, 330, 368, 458

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.